Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0036330 | OGI:01102670 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:35375748-35379080 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatatctgctcaggcacaatgacatccccgtcaatctctatatctctgatgtgagctatctttgcatgatactccccaccttcttggcattgttgcttaatttgtggacatcccttgatgtaaagctcgttgagccccatcggcaggccatcttttggcaagctttcaaccccgggacagttactaatccgtagtgtttcaagtgaggagatgttgtgcagaccaggaggtaagcattgaagatcatcacagcatgatatctccaagaattgaagtgtgtgaggtaaaccctctgctggaaagttattgatatcaggacaatcagcaatttcaaaatgacttagatgaggaaggtaacttaggccatttagaagcacacttgctaatggagtgcatgagtttagacggatatcttcgattgaagtgggaagcaagcctccctccagtgctgtccaaggcaccagacaagggcactcgtagatgtgcaggcttctgagtgatattaatggacggaaacactcctctggcagtgaaacaagcccttcacaatgggctattgttagacttttgagagctgttggtctgtatgcaagtaaacctacacgtagagatgttagatttgggcaatcattgatgtatagagatgttggtgaagatggacaagaattattctgaagctctggaagtgactcaagccctgtttcagaaatccacagtgttcttagtgttgatggaataggaggtaacttcttcaactgtgggcacttgatgagaccaagttcagttaattgtggaaacaattgatcagcaacatcaaaaatccactcgctcagatttggcatatcttccaatagaagatcttctaaagctggaaaaccttttggttgtccaaatcctgtgaactcactgctgagttgtgtcacctcagttactccagctatgacaagatattttaaaaaGggaagctggcctaaagctggaagccttgtgcttctacagttgcatatatgtatggtttgcagcttgggaagaaatgaactagccagccagcttgggaacctcaccccagggaaccctttaatcactaattccttgagatcgagatgtggttgaagaccttctagaacttcttgctgctctgaaggattgctttcacagtcctcatcccatataaggtgtagagttcgaagatgctctttgtttctcaactttgcacaaactgcatcttgcccattaggtacattattgaggccacgaatagaaagttgtccttgcagctcatccatgttatttagttctgtgacgttgtgccctgagcgcttctgaactacaaattcttctagttcctgtaggcataccaaacttccaattccatgtatcctggacagtagtcttgtacttgcttctaagtggcgcagattaatgagcctagtgatgccttgtggcacttcccttagaaaattgcagtcactcagctttagtatttgcaagttatagagcttaacaagagatgctggtaatgtttcgatttcagtgctactgagatctaggaagcgcagttgtttcagattccctatagattctggtaactctttaaggccttgtccatgcatatcaagcactctaagatattcaagtttcataaatagaccatgaggcaattgagacatccttgacttgtatccatggataatagtcagtgtccttagcttcctaaacccatacagtggattgaagtgcatgcacttggcatccttgcatggaaatgaaagatgacgggtcttaatggcattgtcatgtcttctcccataatctaagtggtcgcagtcttccatggagatagattttgcaaggtcgtgcattgcatcatgcatcacatagttattctcatatggctggaagaaagacctgcttaataactcattaaagtatgcatttccagtatcttccattctcttctttctagactgtctgatgaaaccaagtgctagccagatcttaaccagtttctctctcctgaacatataatccttaggatatacagaacagaatgcaaagcactgcttaagatgtggtggtaaatggttgtaacttagacgtagggctggcaggatgttattcttatctgccggtaactcccatatgtcattttgcagtatgtccttccactcctcttcatctgttttgcaaaacaggaggctccctaatgcctttgatgcaagaggcaatcccttcagcttcttcacaatttccattcctatcgcctccaactctggatgtgcgctgcagtcaccatccctaaatgcatggctcttgaatacagaccagctgtcatcatctgatagtttctgtaacttgtagggctctattcctcccatgattctgccaacattctcatttcgtgatgtcaccactatcttgcttccaaaccctcctgaaattaaggctgctctatagctgtgccatttatcaaggtcttcattccagacatcatccaagacaagcaagtacctcttgccccgcaatactctggagagtgtttcctgtagcatattcatgttagtactagcaacagattggtcatagtcagaagcctcaagagtttcttgtgttagctttctctcatcaaaactttcagacacatagatccagatcctcaagtcaaagtgttctcttactctgtcatcatggtacaccatctgcataagagtagttttaccaagcccacccatgccaacaactggaatgacacataagttgcaggaattatgtccattatcagagagcaccagcctcaccatttcttctctgtccctctccctaccaaatacagccgaactatctacaagagaacttgattgcggacgctctgaggtatcataccgtctcatttcacatatcatctggagcccaatggtgtcgcgttcttgcgcaatcttatctaatctctccaatatgatgttaatcttatgctttatcctatgctggtacagattcctactcaagaaggaggaagaaagaaaacttgcctttgtggggaatatcacctgcctctgcttcatgcgcatacttttggctgaatagctgtccagcagatcatcaaggtcgtacgcgatatccttgagcttcgctagccatcccctcacagatgcatctgtcaactgcttctcctcagcatcgtcaaggaaagcctgtaactgagacagtgtggaagagaggctctctagcttgccatgtatgcctctccaagatatgaaatgatcaagggttgcttctgacaatttctggaagagggtttgcatgaaggctcctaaaattgcttctgctgccat
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| CDS seq | atggcagcagaagcaattttaggagccttcatgcaaaccctcttccagaaattgtcagaagcaacccttgatcatttcatatcttggagaggcatacatggcaagctagagagcctctcttccacactgtctcagttacaggctttccttgacgatgctgaggagaagcagttgacagatgcatctgtgaggggatggctagcgaagctcaaggatatcgcgtacgaccttgatgatctgctggacagctattcagccaaaagtatgcgcatgaagcagaggcaggtgatattccccacaaaggcaagttttctttcttcctccttcttgagtaggaatctgtaccagcataggataaagcataagattaacatcatattggagagattagataagattgcgcaagaacgcgacaccattgggctccagatgatatgtgaaatgagacggtatgatacctcagagcgtccgcaatcaagttctcttgtagatagttcggctgtatttggtagggagagggacagagaagaaatggtgaggctggtgctctctgataatggacataattcctgcaacttatgtgtcattccagttgttggcatgggtgggcttggtaaaactactcttatgcagatggtgtaccatgatgacagagtaagagaacactttgacttgaggatctggatctatgtgtctgaaagttttgatgagagaaagctaacacaagaaactcttgaggcttctgactatgaccaatctgttgctagtactaacatgaatatgctacaggaaacactctccagagtattgcggggcaagaggtacttgcttgtcttggatgatgtctggaatgaagaccttgataaatggcacagctatagagcagccttaatttcaggagggtttggaagcaagatagtggtgacatcacgaaatgagaatgttggcagaatcatgggaggaatagagccctacaagttacagaaactatcagatgatgacagctggtctgtattcaagagccatgcatttagggatggtgactgcagcgcacatccagagttggaggcgataggaatggaaattgtgaagaagctgaagggattgcctcttgcatcaaaggcattagggagcctcctgttttgcaaaacagatgaagaggagtggaaggacatactgcaaaatgacatatgggagttaccggcagataagaataacatcctgccagccctacgtctaagttacaaccatttaccaccacatcttaagcagtgctttgcattctgttctgtatatcctaaggattatatgttcaggagagagaaactggttaagatctggctagcacttggtttcatcagacagtctagaaagaagagaatggaagatactggaaatgcatactttaatgagttattaagcaggtctttcttccagccatatgagaataactatgtgatgcatgatgcaatgcacgaccttgcaaaatctatctccatggaagactgcgaccacttagattatgggagaagacatgacaatgccattaagacccgtcatctttcatttccatgcaaggatgccaagtgcatgcacttcaatccactgtatgggtttaggaagctaaggacactgactattatccatggatacaagtcaaggatgtctcaattgcctcatggtctatttatgaaacttgaatatcttagagtgcttgatatgcatggacaaggccttaaagagttaccagaatctatagggaatctgaaacaactgcgcttcctagatctcagtagcactgaaatcgaaacattaccagcatctcttgttaagctctataacttgcaaatactaaagctgagtgactgcaattttctaagggaagtgccacaaggcatcactaggctcattaatctgcgccacttagaagcaagtacaagactactgtccaggatacatggaattggaagtttggtatgcctacaggaactagaagaatttgtagttcagaagcgctcagggcacaacgtcacagaactaaataacatggatgagctgcaaggacaactttctattcgtggcctcaataatgtacctaatgggcaagatgcagtttgtgcaaagttgagaaacaaagagcatcttcgaactctacaccttatatgggatgaggactgtgaaagcaatccttcagagcagcaagaagttctagaaggtcttcaaccacatctcgatctcaaggaattagtgattaaagggttccctggggtgaggttcccaagctggctggctagttcatttcttcccaagctgcaaaccatacatatatgcaactgtagaagcacaaggcttccagctttaggccagcttccCtttttaaaatatcttgtcatagctggagtaactgaggtgacacaactcagcagtgagttcacaggatttggacaaccaaaaggttttccagctttagaagatcttctattggaagatatgccaaatctgagcgagtggatttttgatgttgctgatcaattgtttccacaattaactgaacttggtctcatcaagtgcccacagttgaagaagttacctcctattccatcaacactaagaacactgtggatttctgaaacagggcttgagtcacttccagagcttcagaataattcttgtccatcttcaccaacatctctatacatcaatgattgcccaaatctaacatctctacgtgtaggtttacttgcatacagaccaacagctctcaaaagtctaacaatagcccattgtgaagggcttgtttcactgccagaggagtgtttccgtccattaatatcactcagaagcctgcacatctacgagtgcccttgtctggtgccttggacagcactggagggaggcttgcttcccacttcaatcgaagatatccgtctaaactcatgcactccattagcaagtgtgcttctaaatggcctaagttaccttcctcatctaagtcattttgaaattgctgattgtcctgatatcaataactttccagcagagggtttacctcacacacttcaattcttggagatatcatgctgtgatgatcttcaatgcttacctcctggtctgcacaacatctcctcacttgaaacactacggattagtaactgtcccggggttgaaagcttgccaaaagatggcctgccgatggggctcaacgagctttacatcaagggatgtccacaaattaagcaacaatgccaagaaggtggggagtatcatgcaaagatagctcacatcagagatatagagattgacggggatgtcattgtgcctgagcagatatag
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| Protein seq | MAAEAILGAFMQTLFQKLSEATLDHFISWRGIHGKLESLSSTLSQLQAFLDDAEEKQLTDASVRGWLAKLKDIAYDLDDLLDSYSAKSMRMKQRQVIFPTKASFLSSSFLSRNLYQHRIKHKINIILERLDKIAQERDTIGLQMICEMRRYDTSERPQSSSLVDSSAVFGRERDREEMVRLVLSDNGHNSCNLCVIPVVGMGGLGKTTLMQMVYHDDRVREHFDLRIWIYVSESFDERKLTQETLEASDYDQSVASTNMNMLQETLSRVLRGKRYLLVLDDVWNEDLDKWHSYRAALISGGFGSKIVVTSRNENVGRIMGGIEPYKLQKLSDDDSWSVFKSHAFRDGDCSAHPELEAIGMEIVKKLKGLPLASKALGSLLFCKTDEEEWKDILQNDIWELPADKNNILPALRLSYNHLPPHLKQCFAFCSVYPKDYMFRREKLVKIWLALGFIRQSRKKRMEDTGNAYFNELLSRSFFQPYENNYVMHDAMHDLAKSISMEDCDHLDYGRRHDNAIKTRHLSFPCKDAKCMHFNPLYGFRKLRTLTIIHGYKSRMSQLPHGLFMKLEYLRVLDMHGQGLKELPESIGNLKQLRFLDLSSTEIETLPASLVKLYNLQILKLSDCNFLREVPQGITRLINLRHLEASTRLLSRIHGIGSLVCLQELEEFVVQKRSGHNVTELNNMDELQGQLSIRGLNNVPNGQDAVCAKLRNKEHLRTLHLIWDEDCESNPSEQQEVLEGLQPHLDLKELVIKGFPGVRFPSWLASSFLPKLQTIHICNCRSTRLPALGQLPFLKYLVIAGVTEVTQLSSEFTGFGQPKGFPALEDLLLEDMPNLSEWIFDVADQLFPQLTELGLIKCPQLKKLPPIPSTLRTLWISETGLESLPELQNNSCPSSPTSLYINDCPNLTSLRVGLLAYRPTALKSLTIAHCEGLVSLPEECFRPLISLRSLHIYECPCLVPWTALEGGLLPTSIEDIRLNSCTPLASVLLNGLSYLPHLSHFEIADCPDINNFPAEGLPHTLQFLEISCCDDLQCLPPGLHNISSLETLRISNCPGVESLPKDGLPMGLNELYIKGCPQIKQQCQEGGEYHAKIAHIRDIEIDGDVIVPEQI |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0036330 | OsPr106_01g0036330.01 | Chr01 | 35375748 | 35379080 | - | NAM | ||
| CDS seq | atggcagcagaagcaattttaggagccttcatgcaaaccctcttccagaaattgtcagaagcaacccttgatcatttcatatcttggagaggcatacatggcaagctagagagcctctcttccacactgtctcagttacaggctttccttgacgatgctgaggagaagcagttgacagatgcatctgtgaggggatggctagcgaagctcaaggatatcgcgtacgaccttgatgatctgctggacagctattcagccaaaagtatgcgcatgaagcagaggcaggtgatattccccacaaaggcaagttttctttcttcctccttcttgagtaggaatctgtaccagcataggataaagcataagattaacatcatattggagagattagataagattgcgcaagaacgcgacaccattgggctccagatgatatgtgaaatgagacggtatgatacctcagagcgtccgcaatcaagttctcttgtagatagttcggctgtatttggtagggagagggacagagaagaaatggtgaggctggtgctctctgataatggacataattcctgcaacttatgtgtcattccagttgttggcatgggtgggcttggtaaaactactcttatgcagatggtgtaccatgatgacagagtaagagaacactttgacttgaggatctggatctatgtgtctgaaagttttgatgagagaaagctaacacaagaaactcttgaggcttctgactatgaccaatctgttgctagtactaacatgaatatgctacaggaaacactctccagagtattgcggggcaagaggtacttgcttgtcttggatgatgtctggaatgaagaccttgataaatggcacagctatagagcagccttaatttcaggagggtttggaagcaagatagtggtgacatcacgaaatgagaatgttggcagaatcatgggaggaatagagccctacaagttacagaaactatcagatgatgacagctggtctgtattcaagagccatgcatttagggatggtgactgcagcgcacatccagagttggaggcgataggaatggaaattgtgaagaagctgaagggattgcctcttgcatcaaaggcattagggagcctcctgttttgcaaaacagatgaagaggagtggaaggacatactgcaaaatgacatatgggagttaccggcagataagaataacatcctgccagccctacgtctaagttacaaccatttaccaccacatcttaagcagtgctttgcattctgttctgtatatcctaaggattatatgttcaggagagagaaactggttaagatctggctagcacttggtttcatcagacagtctagaaagaagagaatggaagatactggaaatgcatactttaatgagttattaagcaggtctttcttccagccatatgagaataactatgtgatgcatgatgcaatgcacgaccttgcaaaatctatctccatggaagactgcgaccacttagattatgggagaagacatgacaatgccattaagacccgtcatctttcatttccatgcaaggatgccaagtgcatgcacttcaatccactgtatgggtttaggaagctaaggacactgactattatccatggatacaagtcaaggatgtctcaattgcctcatggtctatttatgaaacttgaatatcttagagtgcttgatatgcatggacaaggccttaaagagttaccagaatctatagggaatctgaaacaactgcgcttcctagatctcagtagcactgaaatcgaaacattaccagcatctcttgttaagctctataacttgcaaatactaaagctgagtgactgcaattttctaagggaagtgccacaaggcatcactaggctcattaatctgcgccacttagaagcaagtacaagactactgtccaggatacatggaattggaagtttggtatgcctacaggaactagaagaatttgtagttcagaagcgctcagggcacaacgtcacagaactaaataacatggatgagctgcaaggacaactttctattcgtggcctcaataatgtacctaatgggcaagatgcagtttgtgcaaagttgagaaacaaagagcatcttcgaactctacaccttatatgggatgaggactgtgaaagcaatccttcagagcagcaagaagttctagaaggtcttcaaccacatctcgatctcaaggaattagtgattaaagggttccctggggtgaggttcccaagctggctggctagttcatttcttcccaagctgcaaaccatacatatatgcaactgtagaagcacaaggcttccagctttaggccagcttccCtttttaaaatatcttgtcatagctggagtaactgaggtgacacaactcagcagtgagttcacaggatttggacaaccaaaaggttttccagctttagaagatcttctattggaagatatgccaaatctgagcgagtggatttttgatgttgctgatcaattgtttccacaattaactgaacttggtctcatcaagtgcccacagttgaagaagttacctcctattccatcaacactaagaacactgtggatttctgaaacagggcttgagtcacttccagagcttcagaataattcttgtccatcttcaccaacatctctatacatcaatgattgcccaaatctaacatctctacgtgtaggtttacttgcatacagaccaacagctctcaaaagtctaacaatagcccattgtgaagggcttgtttcactgccagaggagtgtttccgtccattaatatcactcagaagcctgcacatctacgagtgcccttgtctggtgccttggacagcactggagggaggcttgcttcccacttcaatcgaagatatccgtctaaactcatgcactccattagcaagtgtgcttctaaatggcctaagttaccttcctcatctaagtcattttgaaattgctgattgtcctgatatcaataactttccagcagagggtttacctcacacacttcaattcttggagatatcatgctgtgatgatcttcaatgcttacctcctggtctgcacaacatctcctcacttgaaacactacggattagtaactgtcccggggttgaaagcttgccaaaagatggcctgccgatggggctcaacgagctttacatcaagggatgtccacaaattaagcaacaatgccaagaaggtggggagtatcatgcaaagatagctcacatcagagatatagagattgacggggatgtcattgtgcctgagcagatatag
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| Protein seq | MAAEAILGAFMQTLFQKLSEATLDHFISWRGIHGKLESLSSTLSQLQAFLDDAEEKQLTDASVRGWLAKLKDIAYDLDDLLDSYSAKSMRMKQRQVIFPTKASFLSSSFLSRNLYQHRIKHKINIILERLDKIAQERDTIGLQMICEMRRYDTSERPQSSSLVDSSAVFGRERDREEMVRLVLSDNGHNSCNLCVIPVVGMGGLGKTTLMQMVYHDDRVREHFDLRIWIYVSESFDERKLTQETLEASDYDQSVASTNMNMLQETLSRVLRGKRYLLVLDDVWNEDLDKWHSYRAALISGGFGSKIVVTSRNENVGRIMGGIEPYKLQKLSDDDSWSVFKSHAFRDGDCSAHPELEAIGMEIVKKLKGLPLASKALGSLLFCKTDEEEWKDILQNDIWELPADKNNILPALRLSYNHLPPHLKQCFAFCSVYPKDYMFRREKLVKIWLALGFIRQSRKKRMEDTGNAYFNELLSRSFFQPYENNYVMHDAMHDLAKSISMEDCDHLDYGRRHDNAIKTRHLSFPCKDAKCMHFNPLYGFRKLRTLTIIHGYKSRMSQLPHGLFMKLEYLRVLDMHGQGLKELPESIGNLKQLRFLDLSSTEIETLPASLVKLYNLQILKLSDCNFLREVPQGITRLINLRHLEASTRLLSRIHGIGSLVCLQELEEFVVQKRSGHNVTELNNMDELQGQLSIRGLNNVPNGQDAVCAKLRNKEHLRTLHLIWDEDCESNPSEQQEVLEGLQPHLDLKELVIKGFPGVRFPSWLASSFLPKLQTIHICNCRSTRLPALGQLPFLKYLVIAGVTEVTQLSSEFTGFGQPKGFPALEDLLLEDMPNLSEWIFDVADQLFPQLTELGLIKCPQLKKLPPIPSTLRTLWISETGLESLPELQNNSCPSSPTSLYINDCPNLTSLRVGLLAYRPTALKSLTIAHCEGLVSLPEECFRPLISLRSLHIYECPCLVPWTALEGGLLPTSIEDIRLNSCTPLASVLLNGLSYLPHLSHFEIADCPDINNFPAEGLPHTLQFLEISCCDDLQCLPPGLHNISSLETLRISNCPGVESLPKDGLPMGLNELYIKGCPQIKQQCQEGGEYHAKIAHIRDIEIDGDVIVPEQI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.256328 | 1.036032 | 0.881856 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0799000 | SBH | 0.307265 | 0.086279 | 0.362942 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g72390 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0359400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0037410 | RBH | 0.000000 | 1.574637 | 0.314405 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0036870 | RBH | 0.0 | 0.641035 | 0.553095 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0037270 | RBH | 0.063179 | 0.666690 | 0.198649 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0036670 | RBH | 0.050444 | 0.016057 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021910 | RBH | 0.311004 | 4.103502 | 4.237048 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0566200 | RBH | 0.4890705 | 14.9375435 | 0.79092 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0036080 | RBH | 0.000000 | 0.048124 | 0.128073 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0563500 | RBH | 0.543096 | 17.170106 | 2.295448 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0036200 | RBH | 0.037284 | 0.036456 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0036270 | RBH | 0.163996 | 1.794797 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0036510 | RBH | 1.247414 | 1.881917 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0036580 | RBH | 0.0 | 0.357889 | 0.082335 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0036360 | RBH | 0.035423 | 1.246748 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036850 | RBH | 0.000000 | 0.603515 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0036570 | RBH | 0.000000 | 9.671400 | 0.284955 |
