Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_01g0015430 | OGI:01041680 | 6/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr01:13848964-13849595 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aatacgattgtgtgtggtttgtgatatattggcaagatttaattcaggaacgctgagaaacagcacaggaatgcaatttacaaggcttctagtcatgatgatgaactacagatctttcaaccaccttgccttctaaatttatcaatagggattcctgccaaaattttcagagaagttggatggaaactttgatgaaaattgacaagacaaaagaaaaggagaaagcgtcagtatgaagccacaaactcaccatctcaagagggttgactatgtgcaggaggaaaccatctgagcttgtatggtcaacagggctgggatttccaatatacagcattgaattgtcttgacggaaataaccacaagaacttcccgtgctaatatatgcattctgtaccatatattaaacaattacaagctatatcatcaatttgaagcgctaagatcatcagcgaagagaatgagagttaacacttaccactgcatattttgcaaaaatacgctgaagagactcatagaactttcttgtttgcagtgtgtgcggctcagcacaaacaaagaatggatcatatccaacaactattttcctgtcttaaagtatattattgttagtcattactgttatgacccattca
More
|
||||||||||
| CDS seq | aggaaaatagttgttggatatgatccattctttgtttgtgctgagccgcacacactgcaaacaagaaagttctatgagtctcttcagcgtatttttgcaaaatatgcagtgaatgcatatattagcacgggaagttcttgtggttatttccgtcaagacaattcaatgctgtatattggaaatcccagccctgttgaccatacaagctcagatggtttcctcctgcacatagtcaaccctcttgagatggaatccctattgataaatttagaaggcaaggtggttgaaagatctgtagttcatcatcatgactag |
||||||||||
| Protein seq | RKIVVGYDPFFVCAEPHTLQTRKFYESLQRIFAKYAVNAYISTGSSCGYFRQDNSMLYIGNPSPVDHTSSDGFLLHIVNPLEMESLLINLEGKVVERSVVHHHD |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0015430 | OsPr106_01g0015430.02 | Chr01 | 13848964 | 13849549 | - | NAM | ||
| CDS seq | aggaaaatagttgttggatatgatccattctttgtttgtgctgagccgcacacactgcaaacaagaaagttctatgagtctcttcagcgtatttttgcaaaatatgcagtgaatgcatatattagcacgggaagttcttgtggttatttccgtcaagacaattcaatgctgtatattggaaatcccagccctgttgaccatacaagctcagatggtttcctcctgcacatagtcaaccctcttgagatggaatccctattgataaatttagaaggcaaggtggttgaaagatctgtagttcatcatcatgactag
More
|
|||||||
| Protein seq | RKIVVGYDPFFVCAEPHTLQTRKFYESLQRIFAKYAVNAYISTGSSCGYFRQDNSMLYIGNPSPVDHTSSDGFLLHIVNPLEMESLLINLEGKVVERSVVHHHD |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_01g0015430 | OsPr106_01g0015430.01 | Chr01 | 13848964 | 13849595 | - | NAM | ||
| CDS seq | atggtacagaatgcatatattagcacgggaagttcttgtggttatttccgtcaagacaattcaatgctgtatattggaaatcccagccctgttgaccatacaagctcagatggtttcctcctgcacatagtcaaccctcttgagatggaatccctattgataaatttagaaggcaaggtggttgaaagatctgtagttcatcatcatgactag
More
|
|||||||
| Protein seq | MVQNAYISTGSSCGYFRQDNSMLYIGNPSPVDHTSSDGFLLHIVNPLEMESLLINLEGKVVERSVVHHHD |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0183700 | SBH | 1.231062 | 0.305379 | 0.980062 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g08470 | SBH | 0.542707 | 0.000000 | 0.246551 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0183700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005880 | SBH | 1.826761 | 22.664906 | 5.930646 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005720 | SBH | 0.056477 | 1.555992 | 3.110602 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005690 | SBH | 2.960521 | 23.484161 | 16.273785 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005890 | SBH | 0.417463 | 0.387482 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005760 | RBH | 10.109096 | 12.796991 | 9.393780 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015420 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015190 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015670 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015440 | RBH | 0.0 | 0.0 | 0.0 |
