Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g08470 | OGI:06011940 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:4162931-4167042 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAGATTGATGATAATTAGTTAATTGCTGTATATATACCAAGCAATACATAATTAGCCAGGATATACAGTAGTGCCAGCCAGACAAAACTGTGATAAACCAATACTCTGAAAAGGATTATTTGCAATTGACGGAAAAAAGACTGAATTTGCTACAGAATCTGAACGCCTAAAGAGATAGCAAATACAAATCGGATGCAATTCAATACGAATCTGTGTGGTTTGTGATATACTGGCAAGATTTAATCCAGGAATGCTGAGATCATGAGCTAGAAATTTGAAGGCATACAATTTACAAGGCTTCTAGTCGATGATGATTTACTACAAATCTTTCAACCACCTTGCCTTCTAAATTTATCAAAAGGGACTCCTGCCAAGATATCCAAAGAAGTTGGATGGAAATTCTGATGCAAATTGATACCCGAGACAGAAGAAAACGAGAAAGCGTCAGTATGAAGCCACAAACTCACCATCTCAAGAAGGTTGACTATATGCAGGAGGAAACCATCTGAGCTTGTAAGGTCATCAGGGCTGGGATTTCCAATATACAGCATTGAATTGTCTTGACGGAAGTAACCACAATGACCTCCCGTGCTAATATATGCATTCTGTATCATATAGGAATCAATTACATGCTATATCATCAATGTGAAGCTCTAAGATCATCAGCAAAAAGTGAAGGGAATGGGAGTTACCACTTACCACTCCATATTTTGCAAAAATACGCTGAAGAGGCTCATACAACTTTGTTGTTTCCAGTGTGTGCGCCTCAGCACAAACAAAGAATGGATCATATCCAACAACTATTTTCCTGTCTTAAAGTACACTGTTGTTACTGTTACGACCCATTGAAACCAGCATATATGCTTAAGAGGTCCTAGGTGTGAAGCATGATGTCAAGGCTAACATTCTAATACTATAAAGATACCACAATATAAACATGATGTCGCTTATGTATGCTACTAAACAATTCATTTGTATAGTATATATGCATGTTGGGAGTTTGCATTTCCATTCCAGAAAATTTTACGCTAAAATTTTACGCTGCAGATCCGTTAGAAACAGCTTCAACAATAACACACAAAATTGTATAACCAGTAGTGAACACTCACCAGTTACTGCTGGTTGCCGCTATTGATTGCTCTAGCCATTTAATTTGTTCCCTACTAGAAGCTCTTATTTTCCCATCATGAATAGGTTCCTAAAACATATGCAGTTACGAACAGAATCAAATTTATAACTACAGTCATATTGTTTATAGCTAAATGCCCATGCTTTGCTACGGGAAAATATACATTATATTGCCTAAAATACATAAAAATAAATATATTTATCATGAAGTGTTATGATGTTACCCATCATTTTTCTATAGGGAATAATAGTAACCTTAATTTGATCTTATATATGGCTATACATTTAGATTTGATTGTTTCTTAACATTAAGAAGTTCAAAGGGTAGTTTGCAAAATTTACAATGGGAGTAGGTGGGGTAGCAGATTCACTGCCACCACCACTATCTTCTTTTAAAGGAGTATAGATTGTGTCCAAGTTATTTACAAAGTTCTAAACACAAATAAAAACAACGCTAGTAAAGAATATTAGAAAAATGGAAAGAACTAGTAGGCGCGTTTGCAAGGAGGTGTTGAAATAGTTAGTACATTGGACTTACAATCGGGGATGTAAATTAGAGGCCATTAAGAAAAGATAGAATAATCAGTTAACCACTATTGCTCTTGATGCTAACATAATTAGTGAATAGTATTGTTTGTCAGATAAGGCTGCCTAGCATAAGAAACTAAAAAATGTTGAGAAATAAAAATAATACCTGTAAAGACCCTGTGTCCATACCAATAATTTCTAGACTTTGATCATATGGCATCATCACTCTCTTCAGAAAATTACCAATGATCTGTCCATGGGATGATGTAGTGGAATACCTGAAAAAGATGAAGTTTTACACGTTGTAATGTGCATATGGCTGTGTTCGCCATTTCCAGTTCCCAGTACTCTCGGAAAACGGAGCGGTCCATTAGCGCGTGATTAATTAAGTATTAGCTATTTTTTTAAATAGATTAATTTGATTTTTTAAGCAACTTTCGTATAGAAACTTTTTGCAAAAAACACACCGTTTAGCAGTTTGAAAAGCGTGCACGCAGAAAACAAGGGAGATCGGTTGGGAAAATGGGGTGCCGAACACACCCATAAGAATGCAACCATATAACCATACTGCCATTGTTAAATTTATTAATGACGAGTAAGCTAGCAAGAAAGCGGAAACAACAAGCATACCAGGGGATCTTCAGAGCCTGGAAGTACAGGGAACCCTGAAAGAAACAAAAAGAAGGAACTTCAGAACATTTGGGCCGAGTTTAGTTCCAAACTTTTTCTTCAAACTTCAAACTTTTCCATCACATCAAAACTTTTCTACACACATAAACTTCCAACTTTTCCGTCACATCATTCCAATTTCAATCAAACTTCCAATTTTGGCGTGAACTAAACACACCCTTGGTTGAATTACTTGGACCAGCTCAAAACTCCATTGTACCTATTACTACTTAGTGTACTGTCAGAACAAGTTAGTTGCTTACATTTTGCCAAAGTGGGTCTTCCTCCCCTAGCTGAGCAACATCCACCACAAACTTGACTTTATAGGCCTTTGCTATGCTCTCCATCTTCACAGAAAACAGAATGATTAGAAAAGCAAATGCAGAGTAGGCTGTTAGAACAATTCTTCAGCTATTCATTTTTTTTTCTTTTCAAGAAAAGGGAAAAACGTTGTTGTCAATGAACAGCATCATGCAGTTCACATGGAATTTCTGTCACTTCCTTTGATACCAACACAACACGTTGGTAATAACGGGTTAGTAGAAAAACAGATACGATCCATAGCTTTTTGGGCAATCATTAATCGAGCGTGAGGCAAGGCAGTACAAGAATAGAAGTCAGAACTCTCTGCCGGTCGGAGCTTAGATCAGGCTTAGGAGTTAGGAGGCACATGCACATCTGACGAGCGGACGAACACATGCTGCATGTGCCGTCATCCAAAGTAAGTCTGGTCAAAGCTAATAAGATACGTAGTAGTACTACATTGTATGCCAGTCCTAGATCTGCAAATGCAAATGCGATGGCCACCACCTGAGTGCAAGAATAAGTATGCCATGATACAGGTTAGAACTGCGAAGAAAGCCTGTTCATCAATTCTCTCCACCAAGCATATCGGCGCAACAGAAAGATACACGCAACAGTATCTTCCTCAATGGCCAAACAGCCCTTCCCAAATGGCCAAATGAAACTCAGTTGTCTGATGACAGAGCACAGGCTCCCAGAAAAGCTCGTCCATATGTTAGCCAAAGATTTGATCCGTAATACTAATCTTGCCTAGTAATAGATATGCCAATTAATTACTGTTTGAATGTCAAAGGCAAGTTATCAGAGTGATCATCAGCAATGCCCAGTTCTGCTGTGTGACTGTGAGAGACACATTCCCGTGCGGTGTAGCAGCAGACGCGCCACATTGTACGCGAATGGCAAGCTGGCGATAGCACTACGAACACGGCGCGGTTGGTCGCCGTGCAGTGCAGCCTCTCTCTCATGGAGGTTTCGCGGATGGATCCAGCACACCGCGAAACGACGGGAAACGATGCCGCGAAACGACGGGAAATGATGCCATCGCGACGAACAACATCGCAATCGGCGTGGAGCAGAGGCAATAGGACAACCGAACACGACGTGGAGAGAGAAAGGGAGGGAACGCGCGCACCTGCCGTAGGAGGCGGGCCTGCTCGGCGGCCGGCCGCGCGCCGCCGGCGACGCTGAGGAAGGAGACGCCGCCGCGTCCGCCACGACCCAGCGAAGCCTCCACGCCGCCGCCACCGCCGCGGCCCCGATTCCGGTGGAAGCGTGGCTCGCCGAGGCTGAAGGCCGCGTACATCGCGACGCAGAGCGCCACCTGCACGGCCACCGTGCGACTCCACGGCGGCCGCTTGCTCCGACGCGCCGCTTCCACCTCCATGGCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCGTCCTGTAGACGTTGGCAGCTTGACGATGGAGGCCACCGTTAATGGCACACGGAT
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| CDS seq | ATGGAGGTGGAAGCGGCGCGTCGGAGCAAGCGGCCGCCGTGGAGTCGCACGGTGGCCGTGCAGGTGGCGCTCTGCGTCGCGATGTACGCGGCCTTCAGCCTCGGCGAGCCACGCTTCCACCGGAATCGGGGCCGCGGCGGTGGCGGCGGCGTGGAGGCTTCGCTGGGTCGTGGCGGACGCGGCGGCGTCTCCTTCCTCAGCGTCGCCGGCGGCGCGCGGCCGGCCGCCGAGCAGGCCCGCCTCCTACGGCAGATGGAGAGCATAGCAAAGGCCTATAAAGTCAAGTTTGTGGTGGATGTTGCTCAGCTAGGGGAGGAAGACCCACTTTGGCAAAATGGTTCCCTGTACTTCCAGGCTCTGAAGATCCCCTGGTATTCCACTACATCATCCCATGGACAGATCATTGGTAATTTTCTGAAGAGAGTGATGATGCCATATGATCAAAGTCTAGAAATTATTGGTATGGACACAGGGTCTTTACAGGAACCTATTCATGATGGGAAAATAAGAGCTTCTAGTAGGGAACAAATTAAATGGCTAGAGCAATCAATAGCGGCAACCAGCAGTAACTGGAAAATAGTTGTTGGATATGATCCATTCTTTGTTTGTGCTGAGGCGCACACACTGGAAACAACAAAGTTGTATGAGCCTCTTCAGCGTATTTTTGCAAAATATGGAGTGAATGCATATATTAGCACGGGAGGTCATTGTGGTTACTTCCGTCAAGACAATTCAATGCTGTATATTGGAAATCCCAGCCCTGATGACCTTACAAGCTCAGATGGTTTCCTCCTGCATATAGTCAACCTTCTTGAGATGGAGTCCCTTTTGATAAATTTAGAAGGCAAGGTGGTTGAAAGATTTGTAGTAAATCATCATCGACTAGAAGCCTTGTAA
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| Protein seq | MEVEAARRSKRPPWSRTVAVQVALCVAMYAAFSLGEPRFHRNRGRGGGGGVEASLGRGGRGGVSFLSVAGGARPAAEQARLLRQMESIAKAYKVKFVVDVAQLGEEDPLWQNGSLYFQALKIPWYSTTSSHGQIIGNFLKRVMMPYDQSLEIIGMDTGSLQEPIHDGKIRASSREQIKWLEQSIAATSSNWKIVVGYDPFFVCAEAHTLETTKLYEPLQRIFAKYGVNAYISTGGHCGYFRQDNSMLYIGNPSPDDLTSSDGFLLHIVNLLEMESLLINLEGKVVERFVVNHHRLEAL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g08470 | LOC_Os06g08470.1 | Chr06 | 4162931 | 4167042 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGTGGAAGCGGCGCGTCGGAGCAAGCGGCCGCCGTGGAGTCGCACGGTGGCCGTGCAGGTGGCGCTCTGCGTCGCGATGTACGCGGCCTTCAGCCTCGGCGAGCCACGCTTCCACCGGAATCGGGGCCGCGGCGGTGGCGGCGGCGTGGAGGCTTCGCTGGGTCGTGGCGGACGCGGCGGCGTCTCCTTCCTCAGCGTCGCCGGCGGCGCGCGGCCGGCCGCCGAGCAGGCCCGCCTCCTACGGCAGATGGAGAGCATAGCAAAGGCCTATAAAGTCAAGTTTGTGGTGGATGTTGCTCAGCTAGGGGAGGAAGACCCACTTTGGCAAAATGGTTCCCTGTACTTCCAGGCTCTGAAGATCCCCTGGTATTCCACTACATCATCCCATGGACAGATCATTGGTAATTTTCTGAAGAGAGTGATGATGCCATATGATCAAAGTCTAGAAATTATTGGTATGGACACAGGGTCTTTACAGGAACCTATTCATGATGGGAAAATAAGAGCTTCTAGTAGGGAACAAATTAAATGGCTAGAGCAATCAATAGCGGCAACCAGCAGTAACTGGAAAATAGTTGTTGGATATGATCCATTCTTTGTTTGTGCTGAGGCGCACACACTGGAAACAACAAAGTTGTATGAGCCTCTTCAGCGTATTTTTGCAAAATATGGAGTGAATGCATATATTAGCACGGGAGGTCATTGTGGTTACTTCCGTCAAGACAATTCAATGCTGTATATTGGAAATCCCAGCCCTGATGACCTTACAAGCTCAGATGGTTTCCTCCTGCATATAGTCAACCTTCTTGAGATGGAGTCCCTTTTGATAAATTTAGAAGGCAAGGTGGTTGAAAGATTTGTAGTAAATCATCATCGACTAGAAGCCTTGTAA
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| Protein seq | MEVEAARRSKRPPWSRTVAVQVALCVAMYAAFSLGEPRFHRNRGRGGGGGVEASLGRGGRGGVSFLSVAGGARPAAEQARLLRQMESIAKAYKVKFVVDVAQLGEEDPLWQNGSLYFQALKIPWYSTTSSHGQIIGNFLKRVMMPYDQSLEIIGMDTGSLQEPIHDGKIRASSREQIKWLEQSIAATSSNWKIVVGYDPFFVCAEAHTLETTKLYEPLQRIFAKYGVNAYISTGGHCGYFRQDNSMLYIGNPSPDDLTSSDGFLLHIVNLLEMESLLINLEGKVVERFVVNHHRLEAL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.542707 | 0.000000 | 0.246551 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0183700 | RBH | 1.231062 | 0.305379 | 0.980062 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0183700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0005880 | RBH | 1.826761 | 22.664906 | 5.930646 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0005720 | RBH | 0.056477 | 1.555992 | 3.110602 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0005690 | RBH | 2.960521 | 23.484161 | 16.273785 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0005890 | RBH | 0.417463 | 0.387482 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0005760 | RBH | 10.109096 | 12.796991 | 9.393780 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0071400 | RBH | 7.1842755 | 8.26125 | 2.4936475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0005630 | RBH | 0.631702 | 0.602927 | 0.402104 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0005950 | RBH | 0.210979 | 0.040221 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0005800 | RBH | 1.196287 | 10.336662 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0005800 | RBH | 11.928968 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0035350 | RBH | 1.301969 | 0.0 | 0.290854 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005680 | RBH | 0.933819 | 4.687407 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G005560 | RBH | 0.779566 | 1.969844 | 2.046296 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0005810 | SBH | 8.514817 | 84.597488 | 39.414539 |
