Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0571100 | OGI:12060770 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:23515075-23516013 | ||||||||
| Gene Symbol | MT1G, OsMT1g, MT1g, MT1Le, OsMT1Le | ||||||||||
| DNA seq | ATCAAGCTTTCAATCTCTCATTTCATCCAACTATACAAGTTCAAGAGTTTACAAGAGACCCAGACGATCAAGATGTCGTGCGGTGGAAGTTGCAACTGCGGTTCCTGCGGATGCGGCGGTGGCTGCGGGTACGTTCGATCTTCAGCTATTGATTCTGAATATGTTTGCTATGTATTTGTCAACATAAACTGTCATAAGCTTTGATGATTTTGATGTACTTTCCATCATAGAAGAATACTATGTTAGCCCCAATAGTTCTGCTTACAATTGATTTGAAGTTATATTCAGTTGAAGCCATCCATAAGACAAAAAAAAAGTTGTCATTTCTAGTTACTGAATTTTGCGTTCTGTTTTTTGTTTTCTTGGTTCAGAAAGATGTACCCTGACCTGGCTGAGAAGATCACCACCACCACCACTACTGCAACCACTGTCCTAGGTGTTGCACCTGAGAAGGGGTATGATATCTCTGAATCTTTTCACTGATAAAAAACTTCACTGAAGTAAAAAAAATCCTACCTGAGATTCAGACATGAACAATATGCTGTGATCTACATCTTTCCATGCCTGAAACTGTTCGTTTCTGAATTTGCCTTGTTGATTTGCAGGCACTCTGAGGGGGTTGGCAAGGCAGCTGAATCTGGCGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAGGTGCAACCCCTGCAACTGCTAAGGCCAAGGCGATCTATGACTGAATTGCCAATGCACCAGCCTGTCTACATGATGAATAAATAAAGAGTCCATCCAGTGTGATGGCTCATGCCTGTGTGAGTGTGACTGAATCCATCAGTGTGTGTGTGTGTTTGTGTCAACCATGTGTGAATCAGGTGTCAAAAATCGTGGCTGGAAATCCATGTGGTTTCTAGCTTTATGTAAATGTTGTTTGTGAAATATAAATATTGTTTTGTGT
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| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGCGGTTCCTGCGGATGCGGCGGTGGCTGCGGAAAGATGTACCCTGACCTGGCTGAGAAGATCACCACCACCACCACTACTGCAACCACTGTCCTAGGTGTTGCACCTGAGAAGGGGCACTCTGAGGGGGTTGGCAAGGCAGCTGAATCTGGCGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAGGTGCAACCCCTGCAACTGCTAA |
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| Protein seq | MSCGGSCNCGSCGCGGGCGKMYPDLAEKITTTTTTATTVLGVAPEKGHSEGVGKAAESGEAAHGCSCGSSCRCNPCNC |
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| Function | Metallothionein-like protein 4C [UniProtKB/Swiss-Prot:Q2QNC3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0571100 | OsNip_12t0571100-01 | Chr12 | 23515075 | 23516013 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCGTGCGGTGGAAGTTGCAACTGCGGTTCCTGCGGATGCGGCGGTGGCTGCGGAAAGATGTACCCTGACCTGGCTGAGAAGATCACCACCACCACCACTACTGCAACCACTGTCCTAGGTGTTGCACCTGAGAAGGGGCACTCTGAGGGGGTTGGCAAGGCAGCTGAATCTGGCGAGGCTGCCCATGGCTGCAGCTGTGGCTCCAGCTGCAGGTGCAACCCCTGCAACTGCTAA
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| Protein seq | MSCGGSCNCGSCGCGGGCGKMYPDLAEKITTTTTTATTVLGVAPEKGHSEGVGKAAESGEAAHGCSCGSSCRCNPCNC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.796578 | 0.0 | 3.817869 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38290 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0571100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017930 | RBH | 0.537416 | 2624.176270 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0018050 | RBH | 0.0 | 290.725464 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018450 | RBH | 0.0 | 955.618835 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017750 | RBH | 0.0 | 11.145854 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017320 | RBH | 0.0 | 366.949188 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0309200 | SBH | 0.1706395 | 4.785897 | 0.153998 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0017200 | RBH | 0.147680 | 87.702766 | 0.377473 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0342900 | RBH | 0.7373875 | 180.2001415 | 0.8375305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017420 | RBH | 0.0 | 20.199881 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017690 | RBH | 0.294670 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017610 | RBH | 0.0 | 1179.054321 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017640 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017800 | RBH | 0.0 | 136.400162 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017390 | SBH | 0.0 | 5.558923 | 0.554442 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017240 | RBH | 0.0 | 1265.712891 | 0.0 |
