Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0516350 | OGI:03082670 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:20067178-20067767 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCGCTTCATCTCGCCCTCGTCCGGCCGCCGCCGCGAGTCAGCTGGGAGGCGCGTCGCTGCGACCGGAGAGGCACCAGGCTGCCCTGCCCTGCCGCCGCGACCGGGGGCGCGTGGAGGCGGCCGGCCGCCGGGCCTGACGGCGCGGTGGTGCAGGCGGGCAGCCGCGCAGCCCGAGCCCGGCGCGTGGAGGAGGCCGCGCTGCTCCTGCCGCGCCACACGTCCCGATTTCGGCGGCCTCAACTCCACGATGGATTTCAGCGTCCGAGCCCGCATCCAGAGCCCGCACCAGTCGGCCGCCCACTTCGTCGCCGGCGAGAGGTGACACCGCCGCCCGGCTTCGTCCAAGGTAGGAGTCACTGGTGGTTGAGTTTGTGGAGAACGACGCACCTTTTCCTGTGCCCGCGAGGTGTTTGTGGAAATGACCTGCCGTCTGGGATGATGCAGAGTCCTGATTGAAAGTGAATTGTTATTGTTTGGCTTTGTGAGATTAGAAGCAAATTGATTCTGTAATCTTTGATTGAGATTGATTTGGTTGTATGACTCATATATGCTGTAATTTGAATGAATGAATGAATAAATCAGTAACTTC
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| CDS seq | AAGTTACTGATTTATTCATTCATTCATTCAAATTACAGCATATATGAGTCATACAACCAAATCAATCTCAATCAAAGATTACAGAATCAATTTGCTTCTAATCTCACAAAGCCAAACAATAACAATTCACTTTCAATCAGGACTCTGCATCATCCCAGACGGCAGGTCATTTCCACAAACACCTCGCGGGCACAGGAAAAGGTGCGTCGTTCTCCACAAACTCAACCACCAGTGACTCCTACCTTGGACGAAGCCGGGCGGCGGTGTCACCTCTCGCCGGCGACGAAGTGGGCGGCCGACTGGTGCGGGCTCTGGATGCGGGCTCGGACGCTGAAATCCATCGTGGAGTTGAGGCCGCCGAAATCGGGACGTGTGGCGCGGCAGGAGCAGCGCGGCCTCCTCCACGCGCCGGGCTCGGGCTGCGCGGCTGCCCGCCTGCACCACCGCGCCGTCAGGCCCGGCGGCCGGCCGCCTCCACGCGCCCCCGGTCGCGGCGGCAGGGCAGGGCAGCCTGGTGCCTCTCCGGTCGCAGCGACGCGCCTCCCAGCTGACTCGCGGCGGCGGCCGGACGAGGGCGAGATGAAGCGCC
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| Protein seq | KLLIYSFIHSNYSIYESYNQINLNQRLQNQFASNLTKPNNNNSLSIRTLHHPRRQVISTNTSRAQEKVRRSPQTQPPVTPTLDEAGRRCHLSPATKWAADWCGLWMRARTLKSIVELRPPKSGRVARQEQRGLLHAPGSGCAAARLHHRAVRPGGRPPPRAPGRGGRAGQPGASPVAATRLPADSRRRPDEGEMKR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0516350 | OsNip_12t0516350-01 | Chr12 | 20067178 | 20067767 | - | RAP2018-11-26 | ||
| CDS seq | AAGTTACTGATTTATTCATTCATTCATTCAAATTACAGCATATATGAGTCATACAACCAAATCAATCTCAATCAAAGATTACAGAATCAATTTGCTTCTAATCTCACAAAGCCAAACAATAACAATTCACTTTCAATCAGGACTCTGCATCATCCCAGACGGCAGGTCATTTCCACAAACACCTCGCGGGCACAGGAAAAGGTGCGTCGTTCTCCACAAACTCAACCACCAGTGACTCCTACCTTGGACGAAGCCGGGCGGCGGTGTCACCTCTCGCCGGCGACGAAGTGGGCGGCCGACTGGTGCGGGCTCTGGATGCGGGCTCGGACGCTGAAATCCATCGTGGAGTTGAGGCCGCCGAAATCGGGACGTGTGGCGCGGCAGGAGCAGCGCGGCCTCCTCCACGCGCCGGGCTCGGGCTGCGCGGCTGCCCGCCTGCACCACCGCGCCGTCAGGCCCGGCGGCCGGCCGCCTCCACGCGCCCCCGGTCGCGGCGGCAGGGCAGGGCAGCCTGGTGCCTCTCCGGTCGCAGCGACGCGCCTCCCAGCTGACTCGCGGCGGCGGCCGGACGAGGGCGAGATGAAGCGCC
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| Protein seq | KLLIYSFIHSNYSIYESYNQINLNQRLQNQFASNLTKPNNNNSLSIRTLHHPRRQVISTNTSRAQEKVRRSPQTQPPVTPTLDEAGRRCHLSPATKWAADWCGLWMRARTLKSIVELRPPKSGRVARQEQRGLLHAPGSGCAAARLHHRAVRPGGRPPPRAPGRGGRAGQPGASPVAATRLPADSRRRPDEGEMKR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.819384 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g33165 | RBH | 0.507228 | 0.0 | 0.151574 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0516350 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027660 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015310 | RBH | 4.879800 | 8.909056 | 12.071543 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002600 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014650 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0270300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032440 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0301000 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027260 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027390 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0032620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026920 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0002440 | RBH | 0.0 | 0.0 | 0.0 |
