Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0420000 | OGI:12035600 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:13095003-13096886 | ||||||||
| Gene Symbol | OsSTA280 | ||||||||||
| DNA seq | AAAGCAACGTTATAATATTCTTTAGTGACGAACAAATGAAATAGGAAGGTAGAGAGATAGTGGTAGCATATAAGGGGAGGCCAAACTTCCTCGAGGAACCATCCAGGTAGAAGGTATCTTTGAGCACCTCAGCTTACGGAGTATACTAAATCTTCCAAACAAACCCCTGGCTTTCTGTTTAGGGGAAAAGAGAGAAAGATTAAGCTGGAGTGAGAGGACAATGGCTAGCAAGTGATAACAAGAATGAATGGATGAGAAATATAAAAGATAATATCGGCTTACCTGTAGTGAGAGGACAATGTCACTGCTGTCCAGCTGGTGCAGATTCATACTTTTGGACAATAAGTTGATCTAGGGCAAGCAGCAGAAGCTCTAAAATGGATCAGTAGTTGTCGAGGCAAGAAGACAACGATTTCAACCATCAGAATAAAAAAGGGCAGCCTCAAACTCCACTCCTGACTTGGCCATGTCCAAAATCAATGTATAAAGGAAAATGGTACACATCGGCCTTCTTTTTGCGGATTGAAGATCAACAGGAGTAGCGCAACATACAGAAGAAGCTGTAGATACGGAATCACCAACTACCATTCTATACATATGAAATAGGTGGCGAGTGCTAGTAGGGATCGTAGTTACATCTTTGTCATGCTCCATGTAAAATCCAGGCTTCAGTTCTATCTTCTTGTCTCCATCAGACTGCAAGATGATTGTTATGTGTGTTAGTCTGTCCCAGGAATGCAGCACTGAACATGGGTTCAGAAATTTTATTACTTACTGGCCCGCCAAGATACTGAAATCCAGCCAGCTCCAGCTCCTTCAGAATCCCGTCCTCTCCAATCACATAAACCTGAACAATTAAAATGTTAAACATGCACACATTATTTGCCAAAATCGCTGAACATGAACAGTATAAATGGTAACGTTGTGCACGTATCTTCGTACCAAAACATGTTAACTTCTGAAGATGGTGATATAAATTAGATACTCCTACCTTCTTGTCTTTGGGGAAATCGATGGACTGCAGGTACGCCACATATGCGAACGACGAAGCGAAGATCTCTTCCTGCATAGAGCGTTCCAGGCTCATCAGACCAGATTGGTTGCACAAAGAAAATTTGGTAGTTCATGGCATGAATCCTACCTCATTGACGTTTAGTCCTAGCGTCTCAAACTTCTTCCCGTACTGCTTCCTCGACTTGGTCGAGTTGTTCGTCACGAATACCAGCCTCTTGCCCTGCAACACCACAACCCCATCAGCTTCAACTCCAACAGATTGATAATGCTAAGTTGGAATCGGAGTTCGAGAAGACCATTGCAGTTTGCGACGGACCTTTGATCTAGCATGTCGAGCGTCTCTAGCACTCCGTCGATCAGCTTCTCGCCCTTCCAAATCACACCTACGCTGCTACGCAACAAAAAGAACGCGACAATTCATAACAAAATCACAACCAATCAACCATCGAGCGACCAGCGTGCCATCTCACCGTCGCAGTCAAATATGAACGTCTCGACGGAGTCGATGAGCGTGGCGGCGTCCTCCAGCTTGGCCACCGGGACCGCGCCGGCGCCGCCGCCGCCGCCGCCACGACGGGTGTGAGCATGGCTGGGGAGGCGCCGCTGGGTGGTCAGCACGATGGGCGTGCTCCCTTCTGGCATCAAGTAATGGAGAGGAAGCACCGAGGGGAGGGGAGGCGGTGGAAGGAGCTGTTGCGGGACGCGACGGTCGTCCTCCCTAGGGCTACAGGCGCGTGGCGTGGCTGACGCGTGGGGATGGGGGGAGGCAGTGCGACGCGGGGATGGGAAGCGACCGCATCAGAGGCGGGCCCGCGGCGCAGCTCGCGCGCGCGCGCACGGGGGAGGAGAAGCGGCGCGAGGGTGAAGGAG
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| CDS seq | ATGCCAGAAGGGAGCACGCCCATCGTGCTGACCACCCAGCGGCGCCTCCCCAGCCATGCTCACACCCGTCGTGGCGGCGGCGGCGGCGGCGCCGGCGCGGTCCCGGTGGCCAAGCTGGAGGACGCCGCCACGCTCATCGACTCCGTCGAGACGTTCATATTTGACTGCGACGGTGTGATTTGGAAGGGCGAGAAGCTGATCGACGGAGTGCTAGAGACGCTCGACATGCTAGATCAAAGGGCAAGAGGCTGGTATTCGTGA |
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| Protein seq | MPEGSTPIVLTTQRRLPSHAHTRRGGGGGGAGAVPVAKLEDAATLIDSVETFIFDCDGVIWKGEKLIDGVLETLDMLDQRARGWYS |
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| Function | Phosphoglycolate phosphatase 1B, chloroplastic [UniProtKB/Swiss-Prot:P0DKC4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0420000 | OsNip_12t0420000-00 | Chr12 | 13095637 | 13096720 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCAGAAGGGAGCACGCCCATCGTGCTGACCACCCAGCGGCGCCTCCCCAGCCATGCTCACACCCGTCGTGGCGGCGGCGGCGGCGGCGCCGGCGCGGTCCCGGTGGCCAAGCTGGAGGACGCCGCCACGCTCATCGACTCCGTCGAGACGTTCATATTTGACTGCGACGGTGTGATTTGGAAGGGCGAGAAGCTGATCGACGGAGTGCTAGAGACGCTCGACATGCTAGATCAAAGGGCAAGAGGCTGGTATTCGTGA
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| Protein seq | MPEGSTPIVLTTQRRLPSHAHTRRGGGGGGAGAVPVAKLEDAATLIDSVETFIFDCDGVIWKGEKLIDGVLETLDMLDQRARGWYS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0420000 | OsNip_12t0420000-01 | Chr12 | 13095003 | 13096886 | - | IsoSeq | ||
| CDS seq | TCCTTCACCCTCGCGCCGCTTCTCCTCCCCCGTGCGCGCGCGCGCGAGCTGCGCCGCGGGCCCGCCTCTGATGCGGTCGCTTCCCATCCCCGCGTCGCACTGCCTCCCCCCATCCCCACGCGTCAGCCACGCCACGCGCCTGTAGCCCTAGGGAGGACGACCGTCGCGTCCCGCAACAGCTCCTTCCACCGCCTCCCCTCCCCTCGGTGCTTCCTCTCCATT
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| Protein seq | SFTLAPLLLPRARARELRRGPASDAVASHPRVALPPPIPTRQPRHAPVALGRTTVASRNSSFHRLPSPRCFLSI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 13096399 | 13096487 | - | OsNip_12t0420000-01 | OsNip_12t0420000-00,OsNip_12t0420000-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.295622 | 0.942838 | 0.460075 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0420000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0011060 | RBH | 0.374351 | 0.0 | 6.786447 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0010860 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0203600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0010640 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0010890 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0010830 | RBH | 0.173564 | 0.0 | 0.788875 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0011000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G010770 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
