Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0010640 | OGI:12035600 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:12700437-12702073 | ||||||||
| Gene Symbol | OsSTA280 | ||||||||||
| DNA seq | ttaatgacgaacgaatgaaataggaaggtagagagatagtggtagcatataaggggaggccaaacttcctcgaggaaccatccaggtagaaggtatctttgagcacctcagcttacggagtatactaaatcttccaaacaaacccctggctttctgtttaggggaaaagagagaaagattaagctggagtgagaggacaatggctagcaagtgataataagaatgaatggatgagaaatataaaagataatatcggcttacctgtagtgagaggacaatgtcactgctgtccagctggtgcagattcatacttttggacgataagttgatctagggcaagcagcagaagctctaaaatggatcagtagttgtcgaggcaagaagacaacgatttcaaccatcagaataaaaaaggacagcctcaaactccactcctgacttggccatgtccaaaatcaatgtataaaggaaaatggtacacatcggccttcTttttgcggattgaagatcaacaggagtagcgcaacatacagaagaagctgtagatacggaatcaccaactaccattctagacatatgaaataggtggcgagtgctagtagggatcgtagttacatctttgtcatgctccatgtaaaatccaggcttcagttctatcttcttgtctccatcagactgcaagatgattgttatgtgtgttagtctatcccaggaatgcagcactgaacatgggttcagaaattttattacttactggcccgccaagatactgaaatccagccagctccagctccttcagaatcccgtcctctccaatcacataaacctgaacaattaaaatgttaaacatgcacatattatttgccaaaatcgctgaatatgaacagtataaatggtaacgttgtgcacgtatcttcgtaccaaaacatgttaaaacttctgaagatggtgatataaattagatactcctaccttcttgtctttggggaaatcgatggactgcaggtacgccacatatgcgaacgacgaagcgaagatctcttcctgcatagagcgttccaggctcatcagaccagattggttgcacaaagaaaatttggtagttcatggcatgaatcctacctcattgacgtttagtcctagcgtctcaaacttcttcccgtactgcTtcctcgacttggtcgagttgttcgtcacgaataccagcctcttgccctgcaacaccacaaccccatcagcttcaactccaacagattgataatgctaagttggaatcggagttcgagaagaccattgcagtttgcgacggacctttgatctagcatgtcgagcgtctctagcactccgtcgatcagcttctcgcccttccaaatcacacctacgctgctacgcaacaaaaagaacgcgacaattcataacaaaatcacaaccaatcaaccatcgagcgaccagtgtgccatctcaccgtcgcagtcaaatatgaacgtctcgacggagtcgatgagcgtggcggcgtcctccagcttggccaccgggaccgcgccggcgccggcgccgccgccgccacgacgggtgtgagcatggctggggaggcgccgctgggtggtcagcacgatgggcgtgctcccttctggcat
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| CDS seq | atgccagaagggagcacgcccatcgtgctgaccacccagcggcgcctccccagccatgctcacacccgtcgtggcggcggcggcgccggcgccggcgcggtcccggtggccaagctggaggacgccgccacgctcatcgactccgtcgagacgttcatatttgactgcgacgggcgagaagctgatcgacggagtgctagagacgctcgacatgctagatcaaagggcaagaggctggtattcgtgacgaacaactcgaccaagtcgaggaAgcagtacgggaagaagtttgagacgctaggactaaacgtcaatgaggaagagatcttcgcttcgtcgttcgcatatgtggcgtacctgcagtccatcgatttccccaaagacaagaaggtttatgtgattggagaggacgggattctgaaggagctggagctggctggatttcagtatcttggcgggccatctgatggagacaagaagatagaactgaagcctggattttacatggagcatgacaaagatgtaactacgatccctactagcactcgccacctatttcatatgtctagaatggtagttggtgattccgtatctacagcttcttctgtatgttgcgctactcctgttgatcttcaatccgcaaaaAgaaggccgatgtgtaccattttcctttatacattgattttggacatggccaagtcaggagtggagtttgaggctaaagccaggggtttgtttggaagatttagtatactccgtaagctgaggtgctcaaagataccttctacctggatggttcctcgaggaagtttggcctccccttatatgctaccactatctctctaccttcctatttcattcgttcgtcattaa
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| Protein seq | MPEGSTPIVLTTQRRLPSHAHTRRGGGGAGAGAVPVAKLEDAATLIDSVETFIFDCDGREADRRSARDARHARSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVTTIPTSTRHLFHMSRMVVGDSVSTASSVCCATPVDLQSAKRRPMCTIFLYTLILDMAKSGVEFEAKARGLFGRFSILRKLRCSKIPSTWMVPRGSLASPYMLPLSLYLPISFVRH |
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| Function | Phosphoglycolate phosphatase 1B, chloroplastic [UniProtKB/Swiss-Prot:P0DKC4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0010640 | OsLima_12g0010640.01 | Chr12 | 12700437 | 12702073 | - | NAM | ||
| CDS seq | atgccagaagggagcacgcccatcgtgctgaccacccagcggcgcctccccagccatgctcacacccgtcgtggcggcggcggcgccggcgccggcgcggtcccggtggccaagctggaggacgccgccacgctcatcgactccgtcgagacgttcatatttgactgcgacgggcgagaagctgatcgacggagtgctagagacgctcgacatgctagatcaaagggcaagaggctggtattcgtgacgaacaactcgaccaagtcgaggaAgcagtacgggaagaagtttgagacgctaggactaaacgtcaatgaggaagagatcttcgcttcgtcgttcgcatatgtggcgtacctgcagtccatcgatttccccaaagacaagaaggtttatgtgattggagaggacgggattctgaaggagctggagctggctggatttcagtatcttggcgggccatctgatggagacaagaagatagaactgaagcctggattttacatggagcatgacaaagatgtaactacgatccctactagcactcgccacctatttcatatgtctagaatggtagttggtgattccgtatctacagcttcttctgtatgttgcgctactcctgttgatcttcaatccgcaaaaAgaaggccgatgtgtaccattttcctttatacattgattttggacatggccaagtcaggagtggagtttgaggctaaagccaggggtttgtttggaagatttagtatactccgtaagctgaggtgctcaaagataccttctacctggatggttcctcgaggaagtttggcctccccttatatgctaccactatctctctaccttcctatttcattcgttcgtcattaa
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| Protein seq | MPEGSTPIVLTTQRRLPSHAHTRRGGGGAGAGAVPVAKLEDAATLIDSVETFIFDCDGREADRRSARDARHARSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVTTIPTSTRHLFHMSRMVVGDSVSTASSVCCATPVDLQSAKRRPMCTIFLYTLILDMAKSGVEFEAKARGLFGRFSILRKLRCSKIPSTWMVPRGSLASPYMLPLSLYLPISFVRH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0420000 | RBH | 2.295622 | 0.942838 | 0.460075 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g23150 | RBH | 2.063411 | 0.848078 | 0.152056 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0420000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0010900 | SBH | 0.209686 | 0.0 | 0.562939 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0011110 | SBH | 0.0 | 0.0 | 1.251674 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0011060 | RBH | 0.374351 | 0.0 | 6.786447 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0010860 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0203600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0011010 | SBH | 0.058589 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0010890 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0010830 | RBH | 0.173564 | 0.0 | 0.788875 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0011000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G010770 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0010550 | SBH | 0.369044 | 0.0 | 2.405475 |
