Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0240875 | OGI:12020260 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:7798524-7798850 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | ATGGGGTTCGGGCACGCGACGGCGGCCGTCGCGGCGGGCGTGGCCGCGTGCGCCGAGGCGCGCCGGCTGCGCGCGTCCATGGGCATCGCCGTCGCGTGGCTGCTGCCACAGTACCTCGCGATGGCCGCCTCCGACGCGTCGCTCACCGTCGGACAGCTGGAGTTCTTCTACGGCCAGTCGCCGGAGACGATGAGGAGCGCGTCGACGGCGTTCTGCTTCCTCTCCTACTCGCTCGGGAACCTGCACAACTCCCAGCTGGTGACTCTGGTGTCGAAGGTAACCGCGGCATGGGGGCGACGCGGGGTGGTTTCCACCGGACTTGGATGA |
||||||||||
| CDS seq | ATGGGGTTCGGGCACGCGACGGCGGCCGTCGCGGCGGGCGTGGCCGCGTGCGCCGAGGCGCGCCGGCTGCGCGCGTCCATGGGCATCGCCGTCGCGTGGCTGCTGCCACAGTACCTCGCGATGGCCGCCTCCGACGCGTCGCTCACCGTCGGACAGCTGGAGTTCTTCTACGGCCAGTCGCCGGAGACGATGAGGAGCGCGTCGACGGCGTTCTGCTTCCTCTCCTACTCGCTCGGGAACCTGCACAACTCCCAGCTGGTGACTCTGGTGTCGAAGGTAACCGCGGCATGGGGGCGACGCGGGGTGGTTTCCACCGGACTTGGATGA |
||||||||||
| Protein seq | MGFGHATAAVAAGVAACAEARRLRASMGIAVAWLLPQYLAMAASDASLTVGQLEFFYGQSPETMRSASTAFCFLSYSLGNLHNSQLVTLVSKVTAAWGRRGVVSTGLG |
||||||||||
| Function | Protein NRT1/ PTR FAMILY 8.3 [UniProtKB/Swiss-Prot:P46032] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0240875 | OsNip_12t0240875-00 | Chr12 | 7798524 | 7798850 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGGTTCGGGCACGCGACGGCGGCCGTCGCGGCGGGCGTGGCCGCGTGCGCCGAGGCGCGCCGGCTGCGCGCGTCCATGGGCATCGCCGTCGCGTGGCTGCTGCCACAGTACCTCGCGATGGCCGCCTCCGACGCGTCGCTCACCGTCGGACAGCTGGAGTTCTTCTACGGCCAGTCGCCGGAGACGATGAGGAGCGCGTCGACGGCGTTCTGCTTCCTCTCCTACTCGCTCGGGAACCTGCACAACTCCCAGCTGGTGACTCTGGTGTCGAAGGTAACCGCGGCATGGGGGCGACGCGGGGTGGTTTCCACCGGACTTGGATGA
More
|
|||||||
| Protein seq | MGFGHATAAVAAGVAACAEARRLRASMGIAVAWLLPQYLAMAASDASLTVGQLEFFYGQSPETMRSASTAFCFLSYSLGNLHNSQLVTLVSKVTAAWGRRGVVSTGLG |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g13790 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0240875 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007870 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007940 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008040 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021660 | SBH | 10.499086 | 0.0 | 6.198365 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021780 | SBH | 1.032452 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0022030 | SBH | 1.403181 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0022000 | SBH | 2.265980 | 0.0 | 1.522580 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0007840 | RBH | 0.051435 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0021410 | SBH | 4.690251 | 6.777990 | 1.578851 |
