Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g13790 | OGI:12020260 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:7795469-7799560 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | ATGGGTTTTATAGTGACGTACTCGTGCCTATCAAAGCTAGCATGGAGCATAATTTTAAGTCGTATTTCACTATCAGCACCCTCAAAGATCATTAGTAAGTAGGAAGTTGAGTGCTATTATCAACGGTGGCCTTCAATGGGTCTGCCTCAACTTAATCATATGTATGTCCCTCCTATAATTATGTTTACTACTTGTTGCCCTTTAGGAAAGAAAGAGAAGATGGATGTGATGAAACTAATTCTTTCCTTAAAAATATTATTTTTTACGTTTTGCGTTGACACAATTTGTTTGTAGTGTTAATCAGTACTGCTTAAATTTTATATGGTATAGATACAATATTCTCTTTTAAAATGAGTGAGGTTGGTCATTAAAAAATGTATCGTTAAACATACATACGACCGTGATAATCTTCAGAGTATCATATTATTGATAATCTTCAGAGTATCATATTATTGTTTATATTTTGATAAATATCTATATTTTAGCGTCTAGTTTGTTTTCATCCCCTATTATTCATAACAGGTCCATCAATTTAAATGAAAATTGATGACGAGATTACGTAGTTCCACGTGGCAGTCTAAGAGTGATTGTAGAAGTGCCACATGACCATATTTATGAGCATTAAATTATATTTTTATAGTGTAGAAAATCCTATTTAAAAAGATAGTCTATTTTTCCACGATGGTTCTAACACATATATTTTTCTTTAAGGTTTTATAGCTTTTTTTATCGTACTTACGTGCTTTTTTCAAATGAACAGTATAGGTAAAGGTATTTTTTTCCCATCGCAAGTTTTTCCAGTAAACGTCGTTTGTTTTTTTCCAAACGAACAGTATGTACAGGAGAGACTAATGGAATTTTACTATATACTCCCTCCGTTTCGTTTTATTTGACACAGTTGACTTTTTAGCACATGTTTGACCGCTCGTCTTATTCAAAAAATTTAAATAATTATTAATTATTTTGCTATCATTTGATTCATTGTTAAATATACTTTTATGCATACGTATAGTTTTACATATTTCACAAAAGTTTTTGAATAAGACGAACGGTTAAACATGTGCTAAAAAGTCAACGGTGTCAAATAAAACGAAACGGAGGGAGTAATAGAAGATAGATAGATTGATTTATTATCAATAATAAAAATTATTATTATTATTTTTGTCTGCACTATGTACATGGAAAATAAAAAGAAGGAAAGGTTAATTACGTACGTACACGGGAAGGAGTAACCATTGTTGGTTACGTACGTAGGTACCTATGTAACAGAACCGAAGGGAACGGAAGGAGTAGCCGCTGTTCAGGTTGTTTTAAGATCAATATCTAATCTAACGGCTTATAATATTGGACCCACCGATTTAAGTGAAGATCAACGAATGGATGTTTTGCTTTTTTCTCAGATTTTCTAGGATTTTCTCTAATTTATTAGAGCACCACGTGTCGGCTTGAGAGCGTTTTGAGGAAGTTTAATGGACTTTTAGTATATAATAGATTTTCTAGGATTTTCTCTAATTTATTAGAGCACCACGTGTCGGCTTGAGAGCGTTTTGAGGAAGTTTAATGGACTTTTAGTATATAATAGATAGACTAGATATTCATATTTTTTTACCCTTTTTGTCCACCTCTGTTTTAGATTATTGAACTGCCAATTCGGACTGAATTAGCTAAGAGTCTCACCAGTCAACTCATCCTAACTAACAGGCCTGCAATTCTTGGAAATCACTGCCTTCGTCGGGGTCTACCTGAACCTGATAGTGTACCTTCAGGACGTTCTTCATGGCGACACTGCTTCGAACGTGGCGACGGTCAGTTCTTGGGTCGGAACCACCTACCTCATGCCCATCCTCGGCGCCGCCGTCACCGACTCTTGCTGAGGAAAGTACACGACGGTGATGGCCGGCTTCTCCATAGCTCTCGTCATAAGCGATCTTCCCCTGTAAGAGCAATTTTACCGTTTTTAAAGAGGTACCATGAGATAGTTAAAAATTTACTGTAAAATTTGGTACTTATGTACCTATGTACTATGAAGCACGAAATTTATAACAGAAAAAATGGTACCTCATCACAGGGCATGGCCATGATCACCGCGTCGGCCACGCTGCCGTCTCTGAGGCCGCCAGCCGTGCGGGCAGAGCGCCGACTGCGTCCCGGCGACGCTCAGCCAGGAGCTGGTCTTCTTCACGGGCATAATATACCTCTGCGCCTTGGGGATCGGCGGCGCCAAGGCCGTGCTGATCGCGTTCGGGCCGGAGCAGCTCGACGACGGCGGCGGCGGCGGCGAGAAGGAGAGGAAGGCGTCCTACTTCAGCTGGTACTACGCGGTGGCCAACGTGGGCATGCTTACGGCGGGGACGCTGCTGGTTTGGGTGGAGGACAAGGTGAGCTGGGGGCTCGGGTACGGCCTGTGCGCGTCGTTCGTCGCGGTCGCCGTCGCCGTCCTCGCCGCGACGGCGCCCATGTACCGGATCCTGCCCCCGGCGGCGCCGGCGAGCAGCCCGTTGAAGAGCGTGCTCCAAGTGCTTGTTGTGGCATTCTCTCACAAGGCAAAATTGACTTTGCCGGACGATCCAACTGAGCTGTACGAGGACGACGGCGTCAAGAAGACAAGAACTCGTTGCTGCATCCGGTGCACGAATGATTAGAGCACACAGATCAATTCAGGTAGTAATCTAATCTAATATATTCTCATGGAGCTCAGCTAGGTGAACAACCATGGTCTTTGCATGCACTAGGTGTTTGGACAAGGCTGCCATTGTCGGCGACGAGGATCTGGAAGACGGCGACACGCGCGCGGCGGAGGCTGTGCACGGTGACCCAGGTGGAGGAGATGAAGATTCTGCTGCGGCTGATCCCGATATGGCTCACGTCGGCGGTCTACTTCGTCGCCAACACGCAGGCGCAGGACCACGTTCGTGCAGCAGGGCACCGAGACGGACTGCAGGATCGGCGCCTTCTCCGTCCCGGCCGGCCGCGTCGCTGTCGTCCTTCCAGATGGCGTTCGTCGCCGCCTTCGTCGCGCTCTAAAGCAGGGCCGTGGCGCCCGCCGCTGCAGCTCATGGGGTTCGGGCACGCGACGGCGGCCGTCGCGGCGGGCGTGGCCGCGTGCGCCGAGGCGCGCCGGCTGCGCGCGTCCATGGGCATCGCCGTCGCGTGGCTGCTGCCACAGTACCTCGCGATGGCCGCCTCCGACGCGTCGCTCACCGTCGGACAGCTGGAGTTCTTCTACGGCCAGTCGCCGGAGACGATGAGGAGCGCGTCGACGGCGTTCTGCTTCCTCTCCTACTCGCTCGGGAACCTGCACAACTCCCAGCTGGTGACTCTGGTGTCGAAGGTAACCGCGGCATGGGGGCGACGCGGGGTGGTTTCCACCGGACTTGGATGACGGTCACCTGGATTACTTCTTCCTGCTCATCGTGGCCATCACTGGGGTGAACTTCGCAGTTTACGTCGCCCTCGCCAAGAACTACACGCCAAAGAAGGTTATATTTTGTGTAAAGAAACATACATAGGCAAAAAGATGGGCCTAATTTTAATGGGCCGATTTGGACAGATTGACTCTCTGTGGGCTGTATCCTCAATTTTATGGGCCAGCATGGATCTCAATCACTACTTTGTCAAATTTTCGGGACACACGGCCTGGCTGGGTGACGCGTGCTTCTCAGGCGGAATTAGTTCACCGGAGATCCCTCAACTTAACAGCGAGATTTCTTTTCCTTAACCACAAAACAGAAATGTATACCCCAAAACTTACACAAACCGTGCACTCAAGATCTTATGGCAGTATATATGGGTGGTTGCCACTTGCACTATTCTTCCTTCGCTAAGGCAGCAGCGGGAGGTGAGGGGAGATGGCGACACAGAGGAAGAAGGCGTAGGCGGCGAGGGCTGGACAAGATGGAAGGTGGCGGACTTCCTGCACCAGAGCCTAGCATCGCGGAGGTGGGCGGGCGCCGTGCGGAGGAACCGATGGCCTGGTTGTCGACAACACCCGCGTTGGTGACGGTCGAGAAGGAGCAGGACCTACATGCAGCCACTGCCGTTCCACCTCTGTTGACGACAGCAGGAGGAGGAAGAAGAGGAACAGAGAAATAG
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| CDS seq | ATGGGTTTTATAGTGACGTACTCGTGCCTATCAAAGCTAGCATGGAGCATAATTTTAAGTCGTATTTCACTATCAGCACCCTCAAAGATCATTAGCCTGCAATTCTTGGAAATCACTGCCTTCGTCGGGGTCTACCTGAACCTGATAGTGTACCTTCAGGACGTTCTTCATGGCGACACTGCTTCGAACGTGGCGACGAGCGCCGACTGCGTCCCGGCGACGCTCAGCCAGGAGCTGGTCTTCTTCACGGGCATAATATACCTCTGCGCCTTGGGGATCGGCGGCGCCAAGGCCGTGCTGATCGCGTTCGGGCCGGAGCAGCTCGACGACGGCGGCGGCGGCGGCGAGAAGGAGAGGAAGGCGTCCTACTTCAGCTGGTACTACGCGGTGGCCAACGTGGGCATGCTTACGGCGGGGACGCTGCTGGTTTGGGTGGAGGACAAGGTGAGCTGGGGGCTCGGGTACGGCCTGTGCGCGTCGTTCGTCGCGGTCGCCGTCGCCGTCCTCGCCGCGACGGCGCCCATGTACCGGATCCTGCCCCCGGCGGCGCCGGCGAGCAGCCCGTTGAAGAGCGTGCTCCAAGTGCTTGTTGTGGCATTCTCTCACAAGGCAAAATTGACTTTGCCGGACGATCCAACTGAGCTGTACGAGGACGACGGCGTCAAGAAGACAAGAACTCGTTGCTGCATCCGGTGTTTGGACAAGGCTGCCATTGTCGGCGACGAGGATCTGGAAGACGGCGACACGCGCGCGGCGGAGGCTGTGCACGGTGACCCAGGTGGAGGAGATGAAGATTCTGCTGCGGCTGATCCCGATATGGCTCACGTCGGCGGGCCGTGGCGCCCGCCGCTGCAGCTCATGGGGTTCGGGCACGCGACGGCGGCCGTCGCGGCGGGCGTGGCCGCGTGCGCCGAGGCGCGCCGGCTGCGCGCGTCCATGGGCATCGCCGTCGCGTGGCTGCTGCCACAGTACCTCGCGATGGCCGCCTCCGACGCGTCGCTCACCGTCGGACAGCTGGAGTTCTTCTACGGCCAGTCGCCGGAGACGATGAGGAGCGCGTCGACGGCGTTCTGCTTCCTCTCCTACTCGCTCGGGAACCTGCACAACTCCCAGCTGGTGACTCTGGTGTCGAAGGCAGCAGCGGGAGGTGAGGGGAGATGGCGACACAGAGGAAGAAGGCGTAGGCGGCGAGGGCTGGACAAGATGGAAGGTGGCGGACTTCCTGCACCAGAGCCTAGCATCGCGGAGGTGGGCGGGCGCCGTGCGGAGGAACCGATGGCCTGGTTGTCGACAACACCCGCGTTGGTGACGGTCGAGAAGGAGCAGGACCTACATGCAGCCACTGCCGTTCCACCTCTGTTGACGACAGCAGGAGGAGGAAGAAGAGGAACAGAGAAATAG
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| Protein seq | MGFIVTYSCLSKLAWSIILSRISLSAPSKIISLQFLEITAFVGVYLNLIVYLQDVLHGDTASNVATSADCVPATLSQELVFFTGIIYLCALGIGGAKAVLIAFGPEQLDDGGGGGEKERKASYFSWYYAVANVGMLTAGTLLVWVEDKVSWGLGYGLCASFVAVAVAVLAATAPMYRILPPAAPASSPLKSVLQVLVVAFSHKAKLTLPDDPTELYEDDGVKKTRTRCCIRCLDKAAIVGDEDLEDGDTRAAEAVHGDPGGGDEDSAAADPDMAHVGGPWRPPLQLMGFGHATAAVAAGVAACAEARRLRASMGIAVAWLLPQYLAMAASDASLTVGQLEFFYGQSPETMRSASTAFCFLSYSLGNLHNSQLVTLVSKAAAGGEGRWRHRGRRRRRRGLDKMEGGGLPAPEPSIAEVGGRRAEEPMAWLSTTPALVTVEKEQDLHAATAVPPLLTTAGGGRRGTEK |
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| Function | Protein NRT1/ PTR FAMILY 8.5 [UniProtKB/Swiss-Prot:Q93Z20] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g13790 | LOC_Os12g13790.1 | Chr12 | 7795469 | 7799560 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGTTTTATAGTGACGTACTCGTGCCTATCAAAGCTAGCATGGAGCATAATTTTAAGTCGTATTTCACTATCAGCACCCTCAAAGATCATTAGCCTGCAATTCTTGGAAATCACTGCCTTCGTCGGGGTCTACCTGAACCTGATAGTGTACCTTCAGGACGTTCTTCATGGCGACACTGCTTCGAACGTGGCGACGAGCGCCGACTGCGTCCCGGCGACGCTCAGCCAGGAGCTGGTCTTCTTCACGGGCATAATATACCTCTGCGCCTTGGGGATCGGCGGCGCCAAGGCCGTGCTGATCGCGTTCGGGCCGGAGCAGCTCGACGACGGCGGCGGCGGCGGCGAGAAGGAGAGGAAGGCGTCCTACTTCAGCTGGTACTACGCGGTGGCCAACGTGGGCATGCTTACGGCGGGGACGCTGCTGGTTTGGGTGGAGGACAAGGTGAGCTGGGGGCTCGGGTACGGCCTGTGCGCGTCGTTCGTCGCGGTCGCCGTCGCCGTCCTCGCCGCGACGGCGCCCATGTACCGGATCCTGCCCCCGGCGGCGCCGGCGAGCAGCCCGTTGAAGAGCGTGCTCCAAGTGCTTGTTGTGGCATTCTCTCACAAGGCAAAATTGACTTTGCCGGACGATCCAACTGAGCTGTACGAGGACGACGGCGTCAAGAAGACAAGAACTCGTTGCTGCATCCGGTGTTTGGACAAGGCTGCCATTGTCGGCGACGAGGATCTGGAAGACGGCGACACGCGCGCGGCGGAGGCTGTGCACGGTGACCCAGGTGGAGGAGATGAAGATTCTGCTGCGGCTGATCCCGATATGGCTCACGTCGGCGGGCCGTGGCGCCCGCCGCTGCAGCTCATGGGGTTCGGGCACGCGACGGCGGCCGTCGCGGCGGGCGTGGCCGCGTGCGCCGAGGCGCGCCGGCTGCGCGCGTCCATGGGCATCGCCGTCGCGTGGCTGCTGCCACAGTACCTCGCGATGGCCGCCTCCGACGCGTCGCTCACCGTCGGACAGCTGGAGTTCTTCTACGGCCAGTCGCCGGAGACGATGAGGAGCGCGTCGACGGCGTTCTGCTTCCTCTCCTACTCGCTCGGGAACCTGCACAACTCCCAGCTGGTGACTCTGGTGTCGAAGGCAGCAGCGGGAGGTGAGGGGAGATGGCGACACAGAGGAAGAAGGCGTAGGCGGCGAGGGCTGGACAAGATGGAAGGTGGCGGACTTCCTGCACCAGAGCCTAGCATCGCGGAGGTGGGCGGGCGCCGTGCGGAGGAACCGATGGCCTGGTTGTCGACAACACCCGCGTTGGTGACGGTCGAGAAGGAGCAGGACCTACATGCAGCCACTGCCGTTCCACCTCTGTTGACGACAGCAGGAGGAGGAAGAAGAGGAACAGAGAAATAG
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| Protein seq | MGFIVTYSCLSKLAWSIILSRISLSAPSKIISLQFLEITAFVGVYLNLIVYLQDVLHGDTASNVATSADCVPATLSQELVFFTGIIYLCALGIGGAKAVLIAFGPEQLDDGGGGGEKERKASYFSWYYAVANVGMLTAGTLLVWVEDKVSWGLGYGLCASFVAVAVAVLAATAPMYRILPPAAPASSPLKSVLQVLVVAFSHKAKLTLPDDPTELYEDDGVKKTRTRCCIRCLDKAAIVGDEDLEDGDTRAAEAVHGDPGGGDEDSAAADPDMAHVGGPWRPPLQLMGFGHATAAVAAGVAACAEARRLRASMGIAVAWLLPQYLAMAASDASLTVGQLEFFYGQSPETMRSASTAFCFLSYSLGNLHNSQLVTLVSKAAAGGEGRWRHRGRRRRRRGLDKMEGGGLPAPEPSIAEVGGRRAEEPMAWLSTTPALVTVEKEQDLHAATAVPPLLTTAGGGRRGTEK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0240875 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0240875 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007870 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007940 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0008040 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008040 | RBH | 0.562863 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0007850 | RBH | 2.820120 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0110000 | RBH | 4.927327 | 0.6154625 | 0.002612 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0007830 | RBH | 0.174323 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0115900 | RBH | 4.1231425 | 0.213269 | 0.045168 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0007690 | RBH | 0.673049 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007970 | RBH | 0.443038 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0007810 | RBH | 7.459094 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007840 | RBH | 0.360319 | 0.0 | 0.151212 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0007840 | RBH | 0.051435 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0007790 | RBH | 1.442914 | 0.0 | 0.000000 |
