Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0218500 | OGI:12016510 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:6343046-6344082 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTCAAGGAAAGTTGCCGAGATCTTTGGTTGCTTGCAGGAATCTGGAGATCCTTGACATTGGAAACAATCAAATAAGTGACTCTTTCCCATGTTGGATGAGTAAACTTCCTCAACTTCAAGTCCTGGTCCTCAAATCTAACAGGTTCATTGGGCAGATGGATATTTCTTATACTGGAGATGCTAACAACTGTCAATTTACAAAGTTGCGGATTGCAGACATAGCCTCAAACAACTTCAGTGGCATGTTGCCAGAAGAGTGGTTTAAGATGCTGAAGTCCATGATGACCAGTTCTGATAACGGAACTTCGGTCATGGAAAGTCGGTATTACCATGGACAAACCTACCAGTTTACTGCTGCACTCACATACAAAGGCAATGACATAACAATTTCCAAGATCTTAACATCACTCGTGCTGATTGATGTCTCAAATAATGATTTCCACGGTAGCATCCCGTCAAGCATTGGGGAACTTGCGTTGCTTCACGGGCTCAACATGTCTCGTAATATGCTTACAGGGCCAATTCCAACTCAGTTTGGCAACTTGAACAACCTTGAGTCTTTGGACCTCTCCTCAAATAAGCTTTCCAATGAGATCCCAGAGAAGCTAGCATCACTGAACTTTCTTGCAACATTGAATCTGTCCTATAATATGTTGGCTGGAAGAATACCACAATCGTCACACTTCTCGACATTTTCCAATGCCTCTTTTGAGGGAAATATTGGGCTGTGCGGAGCCCCATTGTCTAAACAATGTAGCTATCGATCTGAACCAAACATCATGCCACATGCTTCCAAGAAGGACCCGATAGATGTTCTACTTTTTCTCTTCACTGGGTTGGGATTTGGTGTCTGCTTTGGAATTACAATTCTAGTGATATGGGGAAGCAACAAAAGGAATCAGCAAGCTTGAGAGCGAACCATATTATAGAATGGCAGAATATTTTGTTAGTCACTCTTGATCACTCTAGCAACATTCAGAAAGATCAGTATTAATAGTGATGTATGAATTAAATAAAGGATGAGTATGTTACCGCGG
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| CDS seq | CAAGGAAAGTTGCCGAGATCTTTGGTTGCTTGCAGGAATCTGGAGATCCTTGACATTGGAAACAATCAAATAAGTGACTCTTTCCCATGTTGGATGAGTAAACTTCCTCAACTTCAAGTCCTGGTCCTCAAATCTAACAGGTTCATTGGGCAGATGGATATTTCTTATACTGGAGATGCTAACAACTGTCAATTTACAAAGTTGCGGATTGCAGACATAGCCTCAAACAACTTCAGTGGCATGTTGCCAGAAGAGTGGTTTAAGATGCTGAAGTCCATGATGACCAGTTCTGATAACGGAACTTCGGTCATGGAAAGTCGGTATTACCATGGACAAACCTACCAGTTTACTGCTGCACTCACATACAAAGGCAATGACATAACAATTTCCAAGATCTTAACATCACTCGTGCTGATTGATGTCTCAAATAATGATTTCCACGGTAGCATCCCGTCAAGCATTGGGGAACTTGCGTTGCTTCACGGGCTCAACATGTCTCGTAATATGCTTACAGGGCCAATTCCAACTCAGTTTGGCAACTTGAACAACCTTGAGTCTTTGGACCTCTCCTCAAATAAGCTTTCCAATGAGATCCCAGAGAAGCTAGCATCACTGAACTTTCTTGCAACATTGAATCTGTCCTATAATATGTTGGCTGGAAGAATACCACAATCGTCACACTTCTCGACATTTTCCAATGCCTCTTTTGAGGGAAATATTGGGCTGTGCGGAGCCCCATTGTCTAAACAATGTAGCTATCGATCTGAACCAAACATCATGCCACATGCTTCCAAGAAGGACCCGATAGATGTTCTACTTTTTCTCTTCACTGGGTTGGGATTTGGTGTCTGCTTTGGAATTACAATTCTAGTGATATGGGGAAGCAACAAAAGGAATCAGCAAGCTTGA
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| Protein seq | QGKLPRSLVACRNLEILDIGNNQISDSFPCWMSKLPQLQVLVLKSNRFIGQMDISYTGDANNCQFTKLRIADIASNNFSGMLPEEWFKMLKSMMTSSDNGTSVMESRYYHGQTYQFTAALTYKGNDITISKILTSLVLIDVSNNDFHGSIPSSIGELALLHGLNMSRNMLTGPIPTQFGNLNNLESLDLSSNKLSNEIPEKLASLNFLATLNLSYNMLAGRIPQSSHFSTFSNASFEGNIGLCGAPLSKQCSYRSEPNIMPHASKKDPIDVLLFLFTGLGFGVCFGITILVIWGSNKRNQQA |
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| Function | Receptor-like protein 9DC3 [UniProtKB/Swiss-Prot:Q5MR23] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0218500 | OsNip_12t0218500-01 | Chr12 | 6343046 | 6344082 | + | RAP2018-11-26 | ||
| CDS seq | CAAGGAAAGTTGCCGAGATCTTTGGTTGCTTGCAGGAATCTGGAGATCCTTGACATTGGAAACAATCAAATAAGTGACTCTTTCCCATGTTGGATGAGTAAACTTCCTCAACTTCAAGTCCTGGTCCTCAAATCTAACAGGTTCATTGGGCAGATGGATATTTCTTATACTGGAGATGCTAACAACTGTCAATTTACAAAGTTGCGGATTGCAGACATAGCCTCAAACAACTTCAGTGGCATGTTGCCAGAAGAGTGGTTTAAGATGCTGAAGTCCATGATGACCAGTTCTGATAACGGAACTTCGGTCATGGAAAGTCGGTATTACCATGGACAAACCTACCAGTTTACTGCTGCACTCACATACAAAGGCAATGACATAACAATTTCCAAGATCTTAACATCACTCGTGCTGATTGATGTCTCAAATAATGATTTCCACGGTAGCATCCCGTCAAGCATTGGGGAACTTGCGTTGCTTCACGGGCTCAACATGTCTCGTAATATGCTTACAGGGCCAATTCCAACTCAGTTTGGCAACTTGAACAACCTTGAGTCTTTGGACCTCTCCTCAAATAAGCTTTCCAATGAGATCCCAGAGAAGCTAGCATCACTGAACTTTCTTGCAACATTGAATCTGTCCTATAATATGTTGGCTGGAAGAATACCACAATCGTCACACTTCTCGACATTTTCCAATGCCTCTTTTGAGGGAAATATTGGGCTGTGCGGAGCCCCATTGTCTAAACAATGTAGCTATCGATCTGAACCAAACATCATGCCACATGCTTCCAAGAAGGACCCGATAGATGTTCTACTTTTTCTCTTCACTGGGTTGGGATTTGGTGTCTGCTTTGGAATTACAATTCTAGTGATATGGGGAAGCAACAAAAGGAATCAGCAAGCTTGA
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| Protein seq | QGKLPRSLVACRNLEILDIGNNQISDSFPCWMSKLPQLQVLVLKSNRFIGQMDISYTGDANNCQFTKLRIADIASNNFSGMLPEEWFKMLKSMMTSSDNGTSVMESRYYHGQTYQFTAALTYKGNDITISKILTSLVLIDVSNNDFHGSIPSSIGELALLHGLNMSRNMLTGPIPTQFGNLNNLESLDLSSNKLSNEIPEKLASLNFLATLNLSYNMLAGRIPQSSHFSTFSNASFEGNIGLCGAPLSKQCSYRSEPNIMPHASKKDPIDVLLFLFTGLGFGVCFGITILVIWGSNKRNQQA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0221700 | RBH | 0.0 | 0.215994 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g12010 | SBH | 0.105573 | 0.056133 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0218500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007040 | RBH | 0.175668 | 1.262008 | 0.119848 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007130 | RBH | 0.041188 | 0.0 | 0.300094 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007170 | SBH | 1.891639 | 0.527976 | 1.866642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0007110 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006970 | SBH | 0.802722 | 1.696579 | 2.660084 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0090500 | SBH | 0.121109 | 1.426467 | 0.1953725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006940 | SBH | 0.031692 | 0.052190 | 0.040368 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0096500 | SBH | 0.2568635 | 2.9742845 | 1.9129855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006810 | SBH | 0.081226 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0007110 | SBH | 0.163408 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006960 | RBH | 0.0 | 6.204627 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0007010 | SBH | 0.120750 | 0.0 | 0.221219 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006890 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006920 | SBH | 0.100535 | 0.0 | 0.454696 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006940 | SBH | 0.152372 | 0.0 | 0.377484 |
