Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0181200 | OGI:12011030 | 7/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:4091707-4097797 | ||||||||
| Gene Symbol | RLCK362, OsRLCK362 | ||||||||||
| DNA seq | ATGGATCATCTCTTCAGTCGAAGCTCGATGACCGGCTCCATCTCCCCTTCATGTACTCCTCCAGCGACACGTTCGCCGCCGTGAAGTCGGCGCCGCCGCTGCTGACGGACGCCGAGTCGTCGTCGACGTCGAGCAGCGCAAGGTTAATGTACGACTGGATGTCCTTCTTCTCCGGCGAAGCGCCATCGCCATCGTCGGTGTCATCGCCTGCGGACAGACCGGCCTGCGAGCTCGCCCACCTGACAGCGTCGCCATCGCCGTCGAGCGGCTTGAGAACCTAAACACATTCAGAGGTTGAGAATGGCCGAATGACATGGCAATTCGAAGGTAGTAGTAGCAGTAGCAGCTAGTCTCTCTCACATTTGCAATGCTAGGCCGCCGTTGCGGCGATCGCCGGATGCAGAGGGCGGCGGGGAGGGTCATCCTCTCGACCTCGCCGGCGACGTCGCCGCCGTCCGTCGGCAGGCTGGGGTCGACGAGGTCAGTGAGCTTTCCTCCTTGTATGATGGTGTTCGCCCACATGACCAGGCTTTCCTTGCCCTTGCCGCCGCCGGAGCTCACCGGCTTCCTCCCGGAGACGAGCTCGAGGAGGACGACGCTGAAGGCGTACACGATCGATCTTGTCGCTGACCTTGCCGTGCATGAAGTACTCTGGAGCCAAGTACCTGCCATGGAGATGCCAGCTTGATCACCTCAAGTTCTTTTCCTCACTTGAATTCTTCATCAAGAAGAAGAAGAAGAAGAAGCAGCTGCAGCTACAAACCCGAATTTGCCGGCGACATCGTCGCCGGTGACCGGAGACGCCGCCTCCGCCGCCCAGAGCGCGAGGCCGAAGTCACACAGCTGTGCATCACGTATCACACAGGTTCAGATTTTTGCTATGTTGACAAATATCTCTGAAGAATCAAGAATCTGATCTGAAGAAATGTTTTTACCTTTGGTTGGAAATCTTCAGAGACGAGGATGTTGGACGACTTGACGTCCCTATGGATCACCGGCCGGCCATCGCCGTCGCCGCCGTGGAGGTACACGAGCGCTCGTGCTACTCCGGCGGCCACCTTGAACCTCTCCGGCCAACCAAACAAATCTTTTCCCTCCTTTTCACCTGCGCAAACAACACAACAGCAATGCAACATCGATCAAGAAATGATCAAAATGTTCAGAGAACTTGCATTTTATAACTTGTGAATTTACTATTTACATTTACACACCGTGCAAGATCTCCTCGAGGCTGCCTCTCGCCATGTAGTCGTAGACCAGCATGAGCTTGGCGCTGCCGCCGTCGTCGTCGAGGCAGAACCCGGCGAGCGGCATGGTGTTGTCGTGGCGGACGGAGCTGACGATCCCCATCTCCTAGACGAGCTCCTCCATCACCTTGTCTGAAGATTTCAGCACCTTCACTGCAACCTCCTTGCCATCATCACAGCAACCCTTGTACACCTCGCCCGCCCCTCCTTTGGCCTTTGCCGATTATCCGATCTGAGCAATCCCAATCCGATCCAATGGATCATGAATTCATCATCGTTCAGCTTAGTTCATCCGAATTTTTGATATTTTCACATACATATGTACTAGGTTTTTTTTTTTTTTACCTGGAGAGAAGTTGGAAGTGATTCTTTGTTAACAACCCAATACACAAATCACAATGAACCAATATCCAGTACAAGCAATGGAGGTGGAGGTGGTTTTGAGCTGCAATTGTATTACTACAACCAAGCTTTGTGGTGGAAATGGGAGTGAACAGGGGATACAAGTTACTAGCAGAAGTAGGGAGGAAGAAGGAGATCGACAAGGAGGCAAGCCCGCCTCCAGGTCGCCGCCGCCGCCGTTCGCCACCTTGCCAATTGATCTCTTCGATAGCCCCTGAAAGTGCAGCCCTGCTGTTTTGTAGTTCTCCTCCTTGTCTTGGTTGGGCTAGGCTTAGAAGGTCACTGAACTGGCCCACATTGCAGCCCACAAGATTTCCTAACAATCCCCATTTCTTGAAATTTGGTTTGTCCCCAAGCCGATGACCTTAAATGTGGAAACTTCACCAACGGATATGTTTGATGCAATGATTTATACTTGATTTCCTCTGTTAATGCTTCTCTTGTAATGTAGCCAATGTGACAAGAAGAATGCCCAGCCAGTGTCACACGAGAGCCGCCTGGATCCCATGGTATACTCAAGGAATTAATGATCACCAATTTTGCTGAACCATATTGCTTCAAAAGTTGCAGGACCAGATCAACTTTCACATCCCTGATAACATCCAGTGCACACCAACAAAGTCCACAATCTTGTCGCCCTTTCAATACAATGCTTCTACTTGAAAAATCTCTAGTCCACCTGTTGTTTCCATCCTCCAGTACATCAACATGCTTCAGTTTTGGCCAAAGGATAGAATCCCGTACCGATATGTCCGTAGCCTCATCAATCACCCTTCTTTCCTTCGCAGTACCGATATGATACACATGGCCGACCTGACCCTTGTGAAGAACCACCTCAAAAGCTTATGCAACGTCATCACAATACAAATAGCTTCTGACATTTGAGCCATTACCATGAATTGGCAGGGGCAATCCTCTCATGGTCAAAGGAATCAATCTGGGAATGAGCTTCTCATGCAATTGATTTGGCCCATATACGTTGTTGCCCTGAGTTGTAATCATAGCAAGATGAAATGTTGTTGTGATTATAGCAGCACACATGATCAGGATCAAGTAGTTGCAGCCCACTGCAATTAGACCATTTAGCATTCCCTGTGTAACTTTTTCTTCATCACCCACATAATGGAAATGTTCCAAGATAAGTAATGCCACCAAGGTATCCTTCTGTGATCCATCAATTTTTTCATGATTTAAATCTCCTTTAGGTGCACAAGATAATGCAACAGAAAGTGCTTCGTTTCTTATGCAATTGGCACTGCAAAAATCATCTCCCATAGAACATTCACAATCTGGTGCTGACCATGGGACTTTCAGTTCAGTCCACCTCCCGCCTGTGCTACATTGACTTGATTGTGGGTCAGGCCACGGTTTCAGCTCTACCACCCTCAGCCATGAGTTTGCCACCAGCCAAAGCATTATGGTTCCAATTTGAGTCGATGGTGGCCAAGGTGGCATCAAAGATAATCTTGTCCTAAAATAGTTGAAGTCCAGCCAGGGCACATGCCACAACTCCCATATTCCATTAACTTGATAAACTGAGTTAGGAGGCGACCAAGGGTTTCGCTTGCACTGCTCCAATAACAATTGCCACATAACGTGTCCCCTTACAGGCAACAACTCACTGGCACCTTTGTCAAAGAATAGCATTGAACACCCTGTAGGCATCACTATGACCAAGTCTATTTCAACGATCTTCCTTGGTGAGCTGCCTTCAATTGTTGCATCAGGTGCAAAAACGCCTTTAGTCATGTCCACTAAGGTCTCGAACGTGACCACAGTTTGGTCGGCGCCACTATTGGAGCTAAGGTCCAACATCAAACACTTGGCGTGCGTCACCTTGGGGTGGTCAAGATTGTTGATGTAAGTGGCACCGATTGTGTTCCCAGCAGCTACCAACTCCATAGAGGCCGCGGCAGTGGTGGCGGACGTAACCACTGCAGCCACAGTGAGATCAGGCTCGACGGTAGGACCGGAGCATTTCGTCGAACACATGGTGGGCGTGACCTCGGGTGAGTCCTTGGTGATGACGCAGGGGGCGTGGCCCTTGTCCTTGTTGTCTCCTAGCTCCCAGGGAACTGTTGTAGCAGTATCCTCACTAATGTGACTTGAACTAGCCGTCGCCCAAGTGAGGTTGTTGTTGGGGCATTCTGTCAAACACTTGGTAGGCGCTAGAGTAGGTGGTGCCATGGGTGCTGTAGGTGATGTAGCCTTGAGAATAGCAGTGGTTGCCCTGATGGATGCAATTGTCTCCTCGGCAGCCTTGCTCCTACGAGCTTCTACCTCCTCCAACTTCTGTAGTATTTGATTGAACTTCTCCTCTTGTCTACGGTTGGCCTCCATCAACTCAAACTTCTCAAGAATCCGATCTAAAGCTTCATCCATGGATATTCCCTCCTTGTTCATGGTGGACTTGATGGGAACGGGCTCTGCTATCCTTTCATCATCCTTAAACACCTTATGTTGGCTTGTCATTCTGTCGAACAGGTTGTGTGCGCTAGATTCTTGAACACCTCCCTTGCCCAATTCTTCTTCCACCTTGCACTGCTGCCTTCCCAAGACCTCAATGACGAGAAATCCCACGAACCGAGCAGCTCTGATACCAGATTGTTAACAACCCCATACACAAATCACAACGAACCAATATCCAGTACAAGCAATGGAGGTGAAGGTAGTTTTGAGCTGCAATTGTATTACTACAACTCAAGCTTTGTGGTGGAAATGGGAGTGAACAAGGGATACAAGTTACTAGCAGAAGTAGGGAGGAAGACGGAGATCGACAAGGAGGCAAGCCCGCCTCCAGGTCGCCGCCGCCGCCGTTCGCCGCCTTGCTAATTGATCTCTTCGATAGCCCCTGAAAGTGCAGCCCTGCTGTTTTGTAGTTCTCCTCCTTGTCTTGGTTGGGCTAGGCTTAAAAGGTCACTGAACTGGCCCACATTGCAGCCCACAAGATTTCCTAACATTCTTGCAAGCTCGCTGTAGCTGAACATGGTGTACTTGGATGAGTACTTGTTTCTCAGCGAGGCAAGCTCTTGTGCAACTTGCTCCGCCGCTTCATCGGTCGCCGGAGATGGAGTTTCCGATGCGGTGATGGCCGGTGAGGTCGCTTGGTCGCCGGAGTTATTGCGTGGATTTAGCGGCGATGGCGCCGGACACCGGCTCGGCAGCTGCATTGCCCACCGCGCCACCGACATCTCCGTCCACTCTGGCAAGGCGGACTTCAGGTCCGGCGAGAGGAGCGGCCAGCCGGCGGCGACCTCCGCCTGACGTGGCGTGAACGCTACGACCGGCGAGACGGGGGCGCTCGTCGGCGTCGAGATGTTCCGGCGAAGGTGCCGGCCGCCGCCGGCGATCGCCGCGTCGTCCTGGGATTTCTCGCGGGTGATCGTCGTCGCCGCTCTGACGAGCTTCCGGTAAATCTTCCGGTAAATCCTCCTCGGCGTCTCCACCACTGCAGCAGAAGCAGCATTCCAACATTTTTTTCACCCAAATTTTTACCAAAACAAAAACGAATTGAAACAAAATTCACATAACATTGCAAATGGCACGAGTCTTCATGAACAAAAATTCAGAGAGAAATTGTGTGGGCAATTGGCAATAGCATACGTGGGCTGATGCACTGGTTGAGTTGCTGCTGCGCGGCGTCTCGCCTGTACACGACCCTGCCATTGCCGACGGCGAGGACCGAGCAGCTCGGAGGCACTCTCTTCGCGCAGTACTTCGCGATGGTGGCGGAGGACGACGACGATGGCCGGAGATGGCTACGGGAGTTGTTTGTGACGCCAAGGATGAGGTGCGCCGCGCCATAGGAGCTCGCCTCGTTCACGAGAGCCTTCTTGATGGATGATCCATGGCAGATTCTGAGCTCCAGGCTGATCTGAGAATGCGGCGAGGAAGAATTCGTCAACCGATCGAGCGGAGAGATTCTCGGATCAAGATTCAGAGTACGTGTGGGCGATGAGCTGGAACCTGGTTGAGATCGCAGAAGTCATGGTACGCGCGGAGCAATGCGGCGAGCGATTCCGTGGCTCTGATCCTCCTCGCCGCCATTCTCATGGCGCCTTCTTGATCGGCGGCGGCAGGGGGTGTGGCGACGTGCAGCGCGACGACGCGGTCGCCGGCGGAGGCGACCATGGCGAGCGCCCAGGTGAGCAGCTCCCTCCCCTCCGCGTCGTCCCGTACACCGACCACCACCACCGTCCTCCCTCCCCACCCCAGCCGCGGCGGCGCCGGCAGCGCTAGCATCATCGGCGCCGCGCGCCGCGACATCGGCGACCTGAGCTTCATCCCGGCGCCGGAACACCTCTCTCTCTCTCTCTCTCTCTCGACGGCGACGCTGCTCCGCTCTGCTTCGATTCTTGGATCGATCGGAGGAGAGAGAGAGAGAGAAGAGCGCGGTGGCGGTGGCGTTTATACGCGGGGGGCGTTCGTTGGCGTGGCGACGA
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| CDS seq | ATGAAGCTCAGGTCGCCGATGTCGCGGCGCGCGGCGCCGATGATGCTAGCGCTGCCGGCGCCGCCGCGGCTGGGGTGGGGAGGGAGGACGGTGGTGGTGGTCGGTGTACGGGACGACGCGGAGGGGAGGGAGCTGCTCACCTGGGCGCTCGCCATGGTCGCCTCCGCCGGCGACCGCGTCGTCGCGCTGCACGTCGCCACACCCCCTGCCGCCGCCGATCAAGAAGGCGCCATGAGAATGGCGGCGAGGAGGATCAGAGCCACGGAATCGCTCGCCGCATTGCTCCGCGCGTACCATGACTTCTGCGATCTCAACCAGATCAGCCTGGAGCTCAGAATCTGCCATGGATCATCCATCAAGAAGGCTCTCGTGAACGAGGCGAGCTCCTATGGCGCGGCGCACCTCATCCTTGGCGTCACAAACAACTCCCGTAGCCATCTCCGGCCATCGTCGTCGTCCTCCGCCACCATCGCGAAGTACTGCGCGAAGAGAGTGCCTCCGAGCTGCTCGGTCCTCGCCGTCGGCAATGGCAGGGTCGTGTACAGGCGAGACGCCGCGCAGCAGCAACTCAACCAGTGCATCAGCCCACTGGTGGAGACGCCGAGGAGGATTTACCGGAAGATTTACCGGAAGCTCGTCAGAGCGGCGACGACGATCACCCGCGAGAAATCCCAGGACGACGCGGCGATCGCCGGCGGCGGCCGGCACCTTCGCCGGAACATCTCGACGCCGACGAGCGCCCCCGTCTCGCCGGTCGTAGCGTTCACGCCACGTCAGGCGGAGGTCGCCGCCGGCTGGCCGCTCCTCTCGCCGGACCTGAAGTCCGCCTTGCCAGAGTGGACGGAGATGTCGGTGGCGCGGTGGGCAATGCAGCTGCCGAGCCGGTGTCCGGCGCCATCGCCGCTAAATCCACGCAATAACTCCGGCGACCAAGCGACCTCACCGGCCATCACCGCATCGGAAACTCCATCTCCGGCGACCGATGAAGCGGCGGAGCAAGTTGCACAAGAGCTTGCCTCGCTGAGAAACAAGTACTCATCCAAGTACACCATGTTCAGCTACAGCGAGCTTGCAAGAATGTTAGGAAATCTTGTGGGCTGCAATGTGGGCCAGCCAAAGGAGGGGCGGGCGAGGTGTACAAGGGTTGCTGTGATGATGGCAAGGAGGTTGCAGTGA
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| Protein seq | MKLRSPMSRRAAPMMLALPAPPRLGWGGRTVVVVGVRDDAEGRELLTWALAMVASAGDRVVALHVATPPAAADQEGAMRMAARRIRATESLAALLRAYHDFCDLNQISLELRICHGSSIKKALVNEASSYGAAHLILGVTNNSRSHLRPSSSSSATIAKYCAKRVPPSCSVLAVGNGRVVYRRDAAQQQLNQCISPLVETPRRIYRKIYRKLVRAATTITREKSQDDAAIAGGGRHLRRNISTPTSAPVSPVVAFTPRQAEVAAGWPLLSPDLKSALPEWTEMSVARWAMQLPSRCPAPSPLNPRNNSGDQATSPAITASETPSPATDEAAEQVAQELASLRNKYSSKYTMFSYSELARMLGNLVGCNVGQPKEGRARCTRVAVMMARRLQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0181200 | OsNip_12t0181200-00 | Chr12 | 4091707 | 4097797 | - | RAP2018-11-26 | ||
| CDS seq | ATGAAGCTCAGGTCGCCGATGTCGCGGCGCGCGGCGCCGATGATGCTAGCGCTGCCGGCGCCGCCGCGGCTGGGGTGGGGAGGGAGGACGGTGGTGGTGGTCGGTGTACGGGACGACGCGGAGGGGAGGGAGCTGCTCACCTGGGCGCTCGCCATGGTCGCCTCCGCCGGCGACCGCGTCGTCGCGCTGCACGTCGCCACACCCCCTGCCGCCGCCGATCAAGAAGGCGCCATGAGAATGGCGGCGAGGAGGATCAGAGCCACGGAATCGCTCGCCGCATTGCTCCGCGCGTACCATGACTTCTGCGATCTCAACCAGATCAGCCTGGAGCTCAGAATCTGCCATGGATCATCCATCAAGAAGGCTCTCGTGAACGAGGCGAGCTCCTATGGCGCGGCGCACCTCATCCTTGGCGTCACAAACAACTCCCGTAGCCATCTCCGGCCATCGTCGTCGTCCTCCGCCACCATCGCGAAGTACTGCGCGAAGAGAGTGCCTCCGAGCTGCTCGGTCCTCGCCGTCGGCAATGGCAGGGTCGTGTACAGGCGAGACGCCGCGCAGCAGCAACTCAACCAGTGCATCAGCCCACTGGTGGAGACGCCGAGGAGGATTTACCGGAAGATTTACCGGAAGCTCGTCAGAGCGGCGACGACGATCACCCGCGAGAAATCCCAGGACGACGCGGCGATCGCCGGCGGCGGCCGGCACCTTCGCCGGAACATCTCGACGCCGACGAGCGCCCCCGTCTCGCCGGTCGTAGCGTTCACGCCACGTCAGGCGGAGGTCGCCGCCGGCTGGCCGCTCCTCTCGCCGGACCTGAAGTCCGCCTTGCCAGAGTGGACGGAGATGTCGGTGGCGCGGTGGGCAATGCAGCTGCCGAGCCGGTGTCCGGCGCCATCGCCGCTAAATCCACGCAATAACTCCGGCGACCAAGCGACCTCACCGGCCATCACCGCATCGGAAACTCCATCTCCGGCGACCGATGAAGCGGCGGAGCAAGTTGCACAAGAGCTTGCCTCGCTGAGAAACAAGTACTCATCCAAGTACACCATGTTCAGCTACAGCGAGCTTGCAAGAATGTTAGGAAATCTTGTGGGCTGCAATGTGGGCCAGCCAAAGGAGGGGCGGGCGAGGTGTACAAGGGTTGCTGTGATGATGGCAAGGAGGTTGCAGTGA
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| Protein seq | MKLRSPMSRRAAPMMLALPAPPRLGWGGRTVVVVGVRDDAEGRELLTWALAMVASAGDRVVALHVATPPAAADQEGAMRMAARRIRATESLAALLRAYHDFCDLNQISLELRICHGSSIKKALVNEASSYGAAHLILGVTNNSRSHLRPSSSSSATIAKYCAKRVPPSCSVLAVGNGRVVYRRDAAQQQLNQCISPLVETPRRIYRKIYRKLVRAATTITREKSQDDAAIAGGGRHLRRNISTPTSAPVSPVVAFTPRQAEVAAGWPLLSPDLKSALPEWTEMSVARWAMQLPSRCPAPSPLNPRNNSGDQATSPAITASETPSPATDEAAEQVAQELASLRNKYSSKYTMFSYSELARMLGNLVGCNVGQPKEGRARCTRVAVMMARRLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0180500 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g08060 | SBH | 0.121763 | 0.050891 | 0.092381 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0181200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005280 | SBH | 0.0 | 1.188463 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0005490 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005530 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0005420 | RBH | 0.0 | 0.026602 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005480 | SBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0067700 | SBH | 0.042762 | 0.7498245 | 0.19249 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005450 | SBH | 0.0 | 0.183353 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0071900 | SBH | 0.203807 | 0.7364665 | 0.1552305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0005260 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005540 | SBH | 0.077735 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005480 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0005450 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0005420 | SBH | 0.000000 | 0.634052 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G005270 | SBH | 0.000000 | 0.406689 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005460 | SBH | 0.000000 | 0.000000 | 0.000000 |
