Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0135051 | OGI:11006130 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:1722709-1724168 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGGCAGAGGCTCCATCACCGCCAAATGCGTTCTCCAGAAAGCCATTTTCACTGAGATGGCCGACGTCTCCACACCTCTCAAGGATCCACCGGCCGGTGACGCCGGAAATGCGGAAAATGTTCAGTGAAGTATTGGGAATTTTCCTACGAATCGAGCTGTTGGGTGGATCAGTGTGCCGGCAGAGTTCTAGTATGGCAGCACCATGGCCGACAACAATCACCCGCTCCCCTGTCAATGCAACATTAGCAAAACATCTTTAAGGTTCCAGGATAGCAGCTTGTCAGGATAAGGTGTACAATGGCATACACAAATGAAATGGAGTAAAAGTTCGATTTTTTTTTATGATAGTTTGATACTTACCGATATGATTCTGAGCAACTTTGTTCAGGTAGGAGATGCCCTGCTCACTTAACTGATTAAGACTTTCTCCACCATCCTAAACATCATTTGAAACAATGATAAACTTTTCAAAAGTTATATAGTACTAGTGCTACAAAATGGTATACACTCACTCCACTTCTGATTTAACAGACCTAGACAAAGTTACATTTCTCGGGTTATAAGTGTTCCAAAGAAAAAATACGGTTTGGAACTTACCGGAAATTCGTGGTTTCTGCCATCAAAGTCCAAACCATTTTTGACTTCAAAATTAGCAAAGCCTTTGAAAACGCCTGGGCTTTTATTCATAGCATCATCCCACGTCAAACCTTGCAGATATCCCATGTGCCTTTCTCTTAGTGCTTCAATCAACACTAACTGGAACAAATTATTGGTGTTACTCATGGAGGAGAAAGCAGGAAAAGGTAGGCTAGAAGAACTCACGTTTGATACATCACAGACTTTTGCTATGATTTTTACAGTCTCAGCAGCACGCTTCAAATCAGACGAGTATATAGCAGCTGGCCTAGCTTTTCTTGCAAGACGACGAGCCACCTTGTAAGTTCGCATCAGATCGATTCATTCAGACAGAAAATATCAAATTAAACTACCAATGCTGGTAATACCATAAATCCACATATTGGTGGTTCTGCTTCGAAATTTTGAGCTAGTGTGTATCGTACCACAACAGCCTGCTGTTTTCCAATCTCGTTCAGCTCTGGATCCATTTGCCCCTATTGCAGAAGTTCAGTGTTCTATCAGGAGTATGTATTTTCATTTTTCCAACACAACGAATCGTCAGAAGGATAAAGCAACAGATGCTTGGTGTTGGCTACCGACCTGAACGATGCGGGAGGAGTTCCACGACGTCTCGCCGTGCCGGACAACCACCAGCTCCACGAACCGATCGACCTCCTTCGCCATGGTGACAGCTGACACCTGATGGCCGCAGGCGAGAGGGAACAGAGGATACCTGACAGCCGCCGTCGCCGGCGAGATGGGGCGGAGGGTGGCTGCTAGCCTCAGCCACCGGGGACCAGGTGCTGCGGCCTGAATGCTTGGACGAACAGTGCCTCGCAT
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| CDS seq | ATGCGAGGCACTGTTCGTCCAAGCATTCAGGCCGCAGCACCTGGTCCCCGGTGGCTGAGGCTAGCAGCCACCCTCCGCCCCATCTCGCCGGCGACGGCGGCTGTCAGGTATCCTCTGTTCCCTCTCGCCTGCGGCCATCAGGTGTCAGCTGTCACCATGGCGAAGGAGGTCGATCGGTTCGTGGAGCTGGTGGTTGTCCGGCACGGCGAGACGTCGTGGAACTCCTCCCGCATCGTTCAGGGGCAAATGGATCCAGAGCTGAACGAGATTGGAAAACAGCAGGCTGTTGTGGTGGCTCGTCGTCTTGCAAGAAAAGCTAGGCCAGCTGCTATATACTCGTCTGATTTGAAGCGTGCTGCTGAGACTGTAAAAATCATAGCAAAAGTCTGTGATGTATCAAACCACTAA
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| Protein seq | MRGTVRPSIQAAAPGPRWLRLAATLRPISPATAAVRYPLFPLACGHQVSAVTMAKEVDRFVELVVVRHGETSWNSSRIVQGQMDPELNEIGKQQAVVVARRLARKARPAAIYSSDLKRAAETVKIIAKVCDVSNH |
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| Function | Phosphoglycerate mutase-like protein 4 [UniProtKB/Swiss-Prot:Q9SCS3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0135051 | OsNip_12t0135051-00 | Chr12 | 1722709 | 1724168 | - | RAP2018-11-26 | ||
| CDS seq | ATGCGAGGCACTGTTCGTCCAAGCATTCAGGCCGCAGCACCTGGTCCCCGGTGGCTGAGGCTAGCAGCCACCCTCCGCCCCATCTCGCCGGCGACGGCGGCTGTCAGGTATCCTCTGTTCCCTCTCGCCTGCGGCCATCAGGTGTCAGCTGTCACCATGGCGAAGGAGGTCGATCGGTTCGTGGAGCTGGTGGTTGTCCGGCACGGCGAGACGTCGTGGAACTCCTCCCGCATCGTTCAGGGGCAAATGGATCCAGAGCTGAACGAGATTGGAAAACAGCAGGCTGTTGTGGTGGCTCGTCGTCTTGCAAGAAAAGCTAGGCCAGCTGCTATATACTCGTCTGATTTGAAGCGTGCTGCTGAGACTGTAAAAATCATAGCAAAAGTCTGTGATGTATCAAACCACTAA
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| Protein seq | MRGTVRPSIQAAAPGPRWLRLAATLRPISPATAAVRYPLFPLACGHQVSAVTMAKEVDRFVELVVVRHGETSWNSSRIVQGQMDPELNEIGKQQAVVVARRLARKARPAAIYSSDLKRAAETVKIIAKVCDVSNH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.175509 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0138400 | RBH | 0.231806 | 0.224351 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g04110 | RBH | 0.413004 | 0.274270 | 0.192489 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0135051 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0002360 | RBH | 0.068844 | 0.475472 | 0.797201 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002560 | RBH | 0.043240 | 0.542354 | 0.284997 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002580 | RBH | 0.248066 | 0.0 | 0.859898 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002390 | RBH | 0.038764 | 0.010582 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002620 | RBH | 0.283582 | 0.000000 | 1.091615 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0034100 | SBH | 0.729666 | 1.333891 | 0.235927 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002600 | RBH | 0.026328 | 0.058062 | 0.088465 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0031400 | RBH | 0.434649 | 0.339447 | 1.588629 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002390 | RBH | 0.022344 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002610 | RBH | 0.033014 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002550 | RBH | 0.000000 | 0.0 | 0.083334 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002560 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002450 | RBH | 0.056754 | 0.0 | 0.128450 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0002710 | RBH | 0.0 | 0.718604 | 0.285371 |
