Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0138400 | OGI:11006000 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:1781572-1786609 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCCATTTCTCCCTTTTTTGTGATTGATTTGCAGATTGATATACAGCTAACTCGACGAACAACGAGTAGTTCATGATCAATTCATCATGCTTATTAAACCGAAGAAAATAGAAATAAAAAAAAAGGAAAAATGTTTCAGATTTCCAGTCATATGGGTAATTGAATCACTGAATACACTGACAAGATGAGTCGCTGTTAAATGTTTCCGCCTAATGCCTAATGTTAGGCAGAGGCTCCATCGCCGCCAAATACGTTCTCCAGAAAGCCATTTTCGCTGAGATGGCCGACGTCTCCACACCTCTCAAGGATCCACCGGCCGGTGACGCCGGAAATGCGGAAAATGTTCAGTGAAGTATTGGGAATTTTCCTGCGAATCGACCTGTTGGGTGGATCAGTGTGCCGGCAGAGTTCTAGTATGGCAGCACCATGGCCGACAACAATCACCCGCTCCCCTGTCAATGCAACATTAGCAAAACATCTTCAAGGTTCCAGGATAGCAGCTTGTCAGGATAAGGTGTACAATGGCATACACAAATGAAATGGAGTAAAAGTTCGATTTTTTTTTATGACAGTTTGATACTTACCGATATGATTCTGAGCAACTTTGTTCAGGTAGGAGATGCACCGCTCACTTAACTGATTAAGACTTTCTCCACCACCCTAAACATCATTTGAAACAATGATAAACTTTTCAAAAGTTATATAGTACTAGTCTATCTATCTATCTATCTATTATATACTAAAAGTCCATTAAACTTCCTACAAACGCTCTTAAACCGCCACGTGGGACTCCTAAAAACGCTCCTAAATCGCCACATGGCATTCTAATATATTAGAAATATCTAGCCTTTAATTTTCACTTAAATAGGTGGGTCCATTATTTTAGACCATTAGATTAGCTTAGATTAAAAAAAGTCAATTAGTCCTCCCCTCATCTCACGAGCGCATATGTACGCCCCAATGGCACGCATGTAACATACGTGAAAGTGTGCCCCACCTTTTTTTTTACTCCCCCCCAAACTTTTACAATATATTTATATCACCTCATTTTTATGCCATTGGTATTTTTGAGCGTATATTTGCTGAAACCACAAAATATTTCAGCAGGTTGTTACATAGACAGTCCCAAAATAAATCATTCGATCCTCGATTTTCATGTTAAATCAGATGGACAAGTTATTTTATACATTAGATTAGATCTATAAAAAAAAAACCATCCAAACCAAAAAGAATATCCTATGTATGTATAAATATATAGCACTATTCACGTGAAAAAAGCCAAAAAGAATCTTCCTGTGTACGTATACTTACTCCATTATATTATTCACCGAATAAAAATATTTTTATTATATGAGATATAAATTGGTGAGTCCATTATTTTAGATTTAGATTAAATTAAAAGAAGAGTTAGTCCCTCCCTCTCATCTCACCCGCGTGTACGTACACCTGCTTCATCCCGTTTGTACCCAGGTAAGGTATGTGCCCTCATTTCTTTCCCTCCCCCCATTTACCCCTTTTTTACCCTACAACCTCTACTTTTTTAGATGTTTTAAATAGTGGGCTAAGCCATAAATAGTGGGCTAAGCCATTTAGCGGTTAGTTCTCAAACAGATATAGCGGCAGCTATAGCGGGCTAAATAGAGCTATAGTGGCTAAATTGTACATGAGAGCAAATAGCTAAACCCTTTTCAAACAACTATAGCGGGAGATTTAAAACCCTGCTTTTTTATGCTATTGACATTGTTTGAGTGAGTGTATATTTGATCATTCATCTTCGTATTAAAATTATGTAATTATAATAGGAGATTCTAGAAATTCCGACCTTCGATTTTTATTTAAATTGGTGAACCAGTTATTTTATAGCATTAGATCACATCTATTAAAAATATTTCATATGTACATATGTTGTACATATGAATACATAGTACTGACAAGAAAAAAAGCCAAAAAGAATATCTTGTGTATATATGTTACCCTCCTTAAAAAAAATTGCATGGATTTCAAAGAAAATGAATGGCCTATATTAGAGGGCACCTAACCCCTAAACTTCCTACAAACTCTCTCAAGCCGACACGTGGGACTCCTAAGAGCATGTACAATGTAAATGCTCTAAAAACGCTCCTAAGTTGTCACATGGCGTTATAATAAATTAGAAAAGTTTATTGATTTTCCATTAAATCGGTGAACACATTAATTTTAACCATTAGATCTCTCTAAAATTCAAAATTCCGGTAGCCAGCACGTACTCCCTCCTAGCCACCCTCCAACTCTTCCCTTCTCTCTTATTTTTAGCTAACTTTTTCTATTATTTAGCTAACATAGATCTATCTTAAGATTTTGAAATTACGCTCATCTGGAAAAAAGAATCACGTGTAGAAAAAGTCCTCTATCTCTCCATGGACGTGCACGTACATATGTACCTACCCTCTTTGTTTTCTTTCCTCTTTTTTTCCCTTCAGGTTAGATGAGATAGAAAATCAATATTCGTATTAAATATATTTTAAGTTGTAAAAATACACTCTAATAAATTAGAAAAACATCTAGAAAATGTGAGAAAAAAAACCTAAAATATCTAGCCATCAATTTTTATTTAAATTGATGGATCTGTTATCTCCGACCATTAGATTAAATCCTATTAATAATCTCTCTCCTAATCTCCCTCAGCGCACTGACGAGAGAAATGTACGTACGTACGACTTGTAAAAAAGCCGAAAATACATATACAATTGTAACATACATTTAAAAATATAAAGTGGAAAAACATAAAAATATAATTATGTCATTAAAAACGTGCATTTGCTTCCTTCTTCTTCCTTCTCTTCTACATGTATAGACGAAATTGTAATTATTAGGAGTGGTAATAAATTTGAAGAAATTATAACTTCATAAACATAGATTATATATATCATCTATATATGTCTAAATTAGCTCCACAAATTTTTGAAAATAAATTTTATAAAACTATATTATTTTACCCTTTATATTAACAATATAATATATTTTTTACTTAAACCGATGTATCTATTATATCAAATCATTATTTTATATCAAAATTTTAAAAACATGTTGTTCAATATAAATGTTACGCAATAATATTCTCTACCAGTAAATTGCCAATTTATGATCTATATTAACTAATATTTTACATTAATTACTGAGCCCACTATTTTATATTATTTTTAATAAAAATATTTTGACATCGGTTTTCAGTTAAACTGATGGACCTATTAACTAGACCTATTAAGGACCTATTAACAACCATTCCATATCTATCTTTTATAAAAGTAAAATGAAACTTCTAAAGACCTCGCACATGTGCATGTTTGCTTTCTGCACGTATGACGAAGCATCGTACCTAAGGCAGCTAAGGTGATCCGATAAACACTATTCATACCAATTAAATTTATATAATTTTTCTCTTATTTCAAACAAATATTTTTCCAAAGAAAACAAACAAACATGAGAAAAAGAAATAAAAAGAAAAGCTTCAAACAATTGCTGATATTTTGCACTACCCAACCAAGCAATTCTGCAAATGATTTGTGTCCTAACAAAAATTCTTTAAAACTTTAGAAAAGAATATGAAAATTTTGAACTTCTACGAAGGGAAAAACAATCTAACCGTTAATCTATCCTTAATTTGGTTGTCACTAAATCACGCATCTTCATGAGACGATTCGATCACAATAACTTTGAGTACTTGCTATCGCAATTTTTACTTGTAGCAATATTGTATGGTATGTGTTCAAATAGTATACATGATATTTACTTTTCGCAAACGCGTATACATGATATTTACTTTTCGCAAACGCATATACATGATATTTACTCACTCAGTCAAAAGTAAATTCAAATGTCATATGACCTTGATCTATCTTCTAAGTCAATGAATATGGTTTTCAGATATATCCAACCTATGATTTGCCCTTATAAGATATAATTTCTAAAGAAATTATAATATTACGTTATGATAGTACGGATGCCCGCGCATCGCGTGGGCCACCTTCCTAGTGCTACAAAATGGTATACACTCATTCCACTTCTGATTTGACAGACCTAGACAAAGTTACATTTCTCGGGTTATAAGTGTTCCAAAGAAAAAATACAGTTTGGAACTTACCGGCAATTCGTGGTTTCTGTCATCAAAGTCCAAACCATTTTTGACTTCAAAATTAGCGAAGCCTTTGAAAACGCTTGGGCTTTTATTCACAGCATCATCCCACATCAAACCTTGCAGATATCCCATGTGCCTTTCTCTTAGTGCTTCAGTCAACATTAACTGAAACAAATTATTGGTGTTACTCATGGAGGAGCAGGCAGGAAAAAGCAGGCTAGAAGAACTCACGTTTGATACATCACAGGCTTTCGCTATGATTTCTGCAGTCTCAGCAGCACGCTTCAGATCAGACGAGTATATAGCAGCTGGCCTAGCTTCTCTTGCCAGACGACGAGCCACCTTATAAGTTTGCATCAGATCGATTCATTCAGACAGAAAATGTCAAATTAAACTACCAATGCTGTATAATATCATAAATCCACATATTGGTCGGTTCTGGTTTGAAATTTTGAGCAAGTTTGTTGATAAAAACAGTAAATTTTGAGCCAGTGTGTATCGTACCACAACAGCCTGCTGTTTTCCAATCTCGTTCAGCTCTGGATCCATTTGCCCCTATTGCTGAAGTACAGTGTTCTATCAGGAGTATGTATTTTCAGTTTTCCAACACTACGAGAATCGTCAGAAGGACAAAGCAACAGATGCTTGGTGTTGGCTACCGACCTGAACGATGCGGGAGGCGTTCCACGACGTCTCGCCGTGCCGGACAACCACCAGCTCCACGAACCGATCGACCTCCTTCGCCATGGTGACAGCTGGCACCTGACCGCCGCGGCCGCAGGCGAGAGGGAACAGAGGATACCTGACAGCCGCCGTAGCCGGCGAGATTGGGCGGAGGGTGGCTGCTAACCTCAGCCACCGGCGACCAGCAGGTCCTGCGGCCTGAATTCTTGGACGAACTGTGCCTCGCATATGTCCTCCCGG
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| CDS seq | ATGCGAGGCACAGTTCGTCCAAGAATTCAGGCCGCAGGACCTGCTGGTCGCCGGTGGCTGAGGTTAGCAGCCACCCTCCGCCCAATCTCGCCGGCTACGGCGGCTGTCAGGTATCCTCTGTTCCCTCTCGCCTGCGGCCGCGGCGGTCAGGTGCCAGCTGTCACCATGGCGAAGGAGGTCGATCGGTTCGTGGAGCTGGTGGTTGTCCGGCACGGCGAGACGTCGTGGAACGCCTCCCGCATCGTTCAGGGGCAAATGGATCCAGAGCTGAACGAGATTGGAAAACAGCAGGCTGTTGTGGTGGCTCGTCGTCTGGCAAGAGAAGCTAGGCCAGCTGCTATATACTCGTCTGATCTGAAGCGTGCTGCTGAGACTGCAGAAATCATAGCGAAAGCCTGTGATGTATCAAACTTAATGTTGACTGAAGCACTAAGAGAAAGGCACATGGGATATCTGCAAGGTTTGATGTGGGATGATGCTGTGAATAAAAGCCCAAGCGTTTTCAAAGGCTTCGCTAATTTTGAAGTCAAAAATGGTTTGGACTTTGATGACAGAAACCACGAATTGCCGGGTGGTGGAGAAAGTCTTAATCAGTTAAGTGAGCGGTGCATCTCCTACCTGAACAAAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATACTAGAACTCTGCCGGCACACTGATCCACCCAACAGGTCGATTCGCAGGAAAATTCCCAATACTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGGTGGATCCTTGAGAGGTGTGGAGACGTCGGCCATCTCAGCGAAAATGGCTTTCTGGAGAACGTATTTGGCGGCGATGGAGCCTCTGCCTAA
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| Protein seq | MRGTVRPRIQAAGPAGRRWLRLAATLRPISPATAAVRYPLFPLACGRGGQVPAVTMAKEVDRFVELVVVRHGETSWNASRIVQGQMDPELNEIGKQQAVVVARRLAREARPAAIYSSDLKRAAETAEIIAKACDVSNLMLTEALRERHMGYLQGLMWDDAVNKSPSVFKGFANFEVKNGLDFDDRNHELPGGGESLNQLSERCISYLNKVAQNHIGERVIVVGHGAAILELCRHTDPPNRSIRRKIPNTSLNIFRISGVTGRWILERCGDVGHLSENGFLENVFGGDGASA |
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| Function | Phosphoglycerate mutase-like protein 4 [UniProtKB/Swiss-Prot:Q9SCS3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0138400 | OsNip_11t0138400-00 | Chr11 | 1781776 | 1786597 | - | RAP2018-11-26 | ||
| CDS seq | ATGCGAGGCACAGTTCGTCCAAGAATTCAGGCCGCAGGACCTGCTGGTCGCCGGTGGCTGAGGTTAGCAGCCACCCTCCGCCCAATCTCGCCGGCTACGGCGGCTGTCAGGTATCCTCTGTTCCCTCTCGCCTGCGGCCGCGGCGGTCAGGTGCCAGCTGTCACCATGGCGAAGGAGGTCGATCGGTTCGTGGAGCTGGTGGTTGTCCGGCACGGCGAGACGTCGTGGAACGCCTCCCGCATCGTTCAGGGGCAAATGGATCCAGAGCTGAACGAGATTGGAAAACAGCAGGCTGTTGTGGTGGCTCGTCGTCTGGCAAGAGAAGCTAGGCCAGCTGCTATATACTCGTCTGATCTGAAGCGTGCTGCTGAGACTGCAGAAATCATAGCGAAAGCCTGTGATGTATCAAACTTAATGTTGACTGAAGCACTAAGAGAAAGGCACATGGGATATCTGCAAGGTTTGATGTGGGATGATGCTGTGAATAAAAGCCCAAGCGTTTTCAAAGGCTTCGCTAATTTTGAAGTCAAAAATGGTTTGGACTTTGATGACAGAAACCACGAATTGCCGGGTGGTGGAGAAAGTCTTAATCAGTTAAGTGAGCGGTGCATCTCCTACCTGAACAAAGTTGCTCAGAATCATATCGGGGAGCGGGTGATTGTTGTCGGCCATGGTGCTGCCATACTAGAACTCTGCCGGCACACTGATCCACCCAACAGGTCGATTCGCAGGAAAATTCCCAATACTTCACTGAACATTTTCCGCATTTCCGGCGTCACCGGCCGGTGGATCCTTGAGAGGTGTGGAGACGTCGGCCATCTCAGCGAAAATGGCTTTCTGGAGAACGTATTTGGCGGCGATGGAGCCTCTGCCTAA
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| Protein seq | MRGTVRPRIQAAGPAGRRWLRLAATLRPISPATAAVRYPLFPLACGRGGQVPAVTMAKEVDRFVELVVVRHGETSWNASRIVQGQMDPELNEIGKQQAVVVARRLAREARPAAIYSSDLKRAAETAEIIAKACDVSNLMLTEALRERHMGYLQGLMWDDAVNKSPSVFKGFANFEVKNGLDFDDRNHELPGGGESLNQLSERCISYLNKVAQNHIGERVIVVGHGAAILELCRHTDPPNRSIRRKIPNTSLNIFRISGVTGRWILERCGDVGHLSENGFLENVFGGDGASA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0138400 | OsNip_11t0138400-01 | Chr11 | 1781572 | 1786609 | - | IsoSeq | ||
| CDS seq | GGGAGGACATATGCGAGGCACAGTTCGTCCAAGAATTCAGGCCGCAGGACCTGCTGGTCGCCGGTGGCTGAGGTTAGCAGCCACCCTCCGCCCAATCTCGCCGGCTACGGCGGCTGTCAGGTATCCTCTGTTCCCTCTCGCCTGCGGCCGCGGCGGTCAGGTGCCAGCTGTCACCATGGCGAAGGAGGTCGATCGGTTCGTGGAGCTGGTGGTTGTCCGGCACGGCGAGACGTCGTGGAACGCCTCCCGCATCGTTCAGCAATAGGGGCAAATGGATCCAGAGCTGAACGAGATTGGAAAACAGCAGGCTGTTGTGGTGGCTCGTCGTCTGGCAAGAGA
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| Protein seq | GRTYARHSSSKNSGRRTCWSPVAEVSSHPPPNLAGYGGCQVSSVPSRLRPRRSGASCHHGEGGRSVRGAGGCPARRDVVERLPHRSAIGANGSRAERDWKTAGCCGGSSSGKR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 1786240 | 1786349 | - | OsNip_11t0138400-01 | OsNip_11t0138400-01,OsNip_11t0138400-00 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.231806 | 0.224351 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0135051 | RBH | 0.175509 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04300 | RBH | 0.054927 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0138400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002550 | RBH | 0.170199 | 0.470189 | 0.896677 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002600 | RBH | 0.000000 | 0.385380 | 0.256163 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002570 | RBH | 0.075460 | 1.198417 | 0.685690 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002520 | RBH | 0.045926 | 0.034698 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002500 | RBH | 0.000000 | 1.360554 | 1.700666 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0034100 | RBH | 0.729666 | 1.333891 | 0.235927 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002560 | RBH | 0.018972 | 0.047176 | 0.252220 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0032700 | SBH | 1.6913125 | 2.225603 | 3.299956 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002440 | RBH | 0.058163 | 0.021615 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002580 | RBH | 0.098769 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002580 | RBH | 0.485320 | 3.833041 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002490 | RBH | 0.244826 | 0.0 | 0.140392 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002580 | RBH | 0.000000 | 0.413796 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002530 | SBH | 0.228833 | 0.183237 | 0.546583 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002480 | SBH | 0.0 | 0.000000 | 0.979901 |
