Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0124100 | OGI:12003450 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:1159628-1165291 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CATGAACACATATGCTCTGCTCCACGACTCCACCAGCAGGGGGTTCTGGAACAATTATAGAAAAAAGATGGGTTGGGAAATTAGTAACAAGTATTGAGGATACAAAAGAGACGTGCAATAATAAGGCATAGTCGCACAGAGCCACAGAAGTAGTATGTCACCACCTTGCCATGCTCGTTTATTTGTTGTTAGTGCCCAGCATGCTCCCTAATCTCGTATCTCCACAACAGGAATATGGGAGATGATGTGCCAGTCCTTCCCGACCCTATTTTTGTAATGCCTACTCAAGGTAGGGTTGTAACTAATCACCAAATGCTGAAGAGAAGTAAGGTGTTGTATGGAGCTGGGCAAGGATCGAAGGCCAGTGCAGCTTTGCATATAAAGCGATCGGAGCGCGGAGAGTTGTCTGAGTGACTCTGGCAGCACGGTGAGCATAGGGCAGCTCATCAAGTTGATGTGCCGGAGTGAGGTGAGCCCCTGCATGGACTCCAGAAGGGTCGTAAGGACAGGCAAGATATTGATCATAAGGTCCTCTAGAGAACCTAACATCCCCAGTCCTTCTGGCAGCTTGTGGAGGGCAAGACAGTCCTGTATACTTAGGTCTTCAAGGTTGGTAAGATGCTGAATTCCCTCAGGCAACTGGCTCAGATTTCTGCAACTAGAAATATCCAATTCCTTGAGGGAGGTGAGATGATTTACCACCTCAGGCAACTCCTTTAGATTGTCGCATTCAACAATAGCCAACTTCTCCAGGGATGTAAGGAGCATGATCGACTTGGGGAGGCTAGCCAATAGTGGGATTTCTTTCAGAACTAGAGTTTGCAGAGAGCGGAATCCCCCCAGCCACTCTGGCAGCATGGCAAGAACTGGGCAACCCGAGATACAAAGATACTGGAGGGAGGTGAGGCTCCGGATGATCTCCCCTAATTGCCTTAGGTCACTGGAATAAATTGACAAGGATTCGAGCCCGGTGAGGTTCTGCAGCACTTCCCAACCTGACGATGATCCAGCCATTCCTCCTAGTTCTAATTTCTTGAGGTGAGGGGAATCCACACTAAAGCAGATGGATGAGGATTCCTTGTCAAGAGGATGGAGCGGATGAGAGAAGCTAACTTGAGACAGCAGCTGCTCGTTGCTTCGTTCCAGTGTCAAGCTATCCAAATATGGTGGGAAACATGGGCATTACTTCAGCTTAGGACAATCACTCATGACTAGAGTGGATAGGAAAGGGAAGCAGTGCTCAACTTGTTCGTGATCAATACAACAGGGCTTTCCTTCCTCCCCACTTACTAATGCAGGTGAGCTTGTCCACAACTCCACCAAATTAGGCATTCCTTTCAATACAAAAGTATTCAATGAAGGCAACCGTGCAAGTCCTTGCAGATTCTCCAAGTTTGGAAATTGTTCCAATACAAGTTTAGTCAGTTGAGTGAAATGAGGTGGATCAATTTGCTCTAACAAGCTATCTGAACAAGAGGATTCTCTTTGCTTCATCATCCAACGTGAGAAATGCTTACCTTTGTAATTATAGATATTCAGCTTCTTAATTTGTGATGGTGGTTCAAGACCATTGAGCACACGCAGCTCCTTTTCCATATCTAATAATGGCTCTTCTTCCAGACTATCCGAGCACCCTTCTGCACCATTTGAAGACCAATCCAATGTCAAATTGAGTATACCACTCTTTTCCTTCAGGGAGGCCTTTTCTGCATCATCTGGATCCTCTACATATTTAATAATTTTTATTTCCAGATCATTGTCGGTTAACAAGTTGAGGTTTCGAAGCCCTGATATTCTTGCATGCTCGCTACTGCCACCTATAACAAACAAATGCAGCCTTTGAAGATGAGTTAGCTGTCCAATCCCTACTGGCAGGCCACCCAAATTCGAGCATCCTTTTAGGTTCAAAACTTCAAGCCTCTCTAGGTTCCCTATGCCCTCCGATAACTCTAGCAGCCCCCAGCAGTTTTGAAGGTCTATGTATTCCAGGGTGCTCACCAATGTGAGGCATTGCGGTAGTCTGGTAATTTCGGTTCCACTAAGTGTCAAAGTGCGTAGTTTATGACAAGCAAATGAACTGAACAAGTTGTGGATACCCTCAATCTGTGCTAAGTTGATGGACTGTAAGTTGCAAAGCGTCCCAAAGAATTCTGACCATTGTTGCCTCAAAGAGCGACAATGCATAATGTTAAGCACTCTTAGTTTTTTAATTTTACATATGGAGTTTGGTATCTCCCTGATACCACTGCCACGCAGGAGAAAGCTTTGAAGATTATGACAGTCACCAATGGACTGAGGCAAACTTTCAAGATCCAAAAGACATGACAACTCTAGGGTTCTCAGCTTCTTAAGCTTACCAATAGACTCAGGTAATGTGGTAAGTGCCCTGCAATATGTAACATGAAGGGCCTGCAAGTTCCAGCAATGTGAGATTTCTTCTGGAAAGGCTCGACAGCTAGCGTGTGAGATACGAAAATAGCTAAGATATTCGAACTTTGGTATCAATGGAAGCAACAAATTAGTAGCGCCCATACTCTCCAAAATAATAGAACGAACATGGCACCTTTTCTTGATTGGCTTGTTGAGTGCGAAGTTGTCACCAGAAATATAGATAGCATGGACCTTGCTAAATAACTTCACTTCAATATTCTCATTGCACGAAGCCAAAGATAAATATCTGCATTTTTGGGAATTACCAATAGTTGCATTCTGAGAATGAGACACCATTTCACCCTGTAAAATTTGCCGAGTAAGGTCAAGAACCAGGTCATGCATCTTGCATATTTCCATTTCATCATACTCATCTACCTCTAGATCTTGGAGAAAGTGCACTTTCAGAAGAGAATCAAAGCAGTCATTTGCAACATCCTCTACTTGTTCAATCTCATTCATTGGATTGATGAAGCCATTTGCTATCCACTCTCCGATCAACTGGTGTTTGTAGATCTTGTAGCCTTTAGGAAATATAGAGCAATATACAAAACATTGCTTCAGATGATCAGGCAGATGAAAATAGCTCAGCCTTAATGACGCAAACACTCTATCTTCTATATCATCAACATTCCACATGTTACTATCACGTAAGGCACACCATGCATCTACTGTTTTCTTGTTACGGAGGACACCTGCAAGAATTTTAATTGCCAGTGGCACCCCACCACATTTTTTAATAATCTCTCTTCCAATTTCTACAAATTCAGAGGGCAGACCTTTTGCAGCTAACCTTAAACTTTGTTGAAATAAATTCCAGCTGTCCTCATCTGACAAGAAAGCCAACTTATATGTACATGTAGATTCCACTGCCTCCGCAACTCCCTGATCACGAGTTGTGAGCAAAATCCGGCTTCCAGGTGATCCACTCTTAAGATATAGCATGAATCGTTCCCAGTCATATTGATTCTTGTGCCAAGCATCATCCAAGACAAGTAGAAACTTATTCCCATTCAACTCGTTTGAAATTGCTTCAACCATCTGTTGGTCGGTACGAAGATATGATGTTTTCTTTAAAATGGCTTCATACAGCTTGCCGACGAGTTTGTTATTATCAAATTCTTGTGACACGTGAACCCAAAATATTGAGCCTTCAAAATGCTCTTTTATTTTGTTGTCATGACAGATGTGTGTGGCCATAGTAGTTTTACCGGTTCCACCAAGTCCAACAATTGAAACTATTGAGATTTTCTGTTGGTCATCTATTAACTTACATATGATCTTGTGCTTCTCCTCATCTCACATGTATTTTTGAGTCATCAACATTGCCCAATAAGGATGGCTCACTGATAATCTTGTTTTTATGAACATTATGATCGATTGGTATAGCATTCAATATAGTATTGACATCGCCTCTTTGCTCGACAATTGCAGCAAATCTGTTTTTGATTGTCTTTATCTTGTTGGCCATTTTGAGTTGAAACATGGCTAGTTTTGGTTTTGTGCGCATGTATTTGAGCACAGCATACTTGTCACGATCATTATCTGTGTCATGTTTCTCAGACTGAAGATGAAATTCATGTACCAAATCTTCAAGATCGTAAGCAAAATCTTTCAATTTTTTTAGCCAATTAGATGGTGGTTTATTACCAATTGCATTATCACCTGCTACCTGTAGCCCGCTTTTGATCTCCTCAACTAAATCTTGAAGCTCCTGGAGATCTTTCGTAACACCCATAAGAGAACTATACTCTCTTATTACAAGTGGTGCTAACTTGTCTCCCACAATCTTAAATAATCCATACAGCAGCTTCCATGCCCATATGTTTGAAACTTGGAAGCTTCTCTTTGGCCCAAATCCTACATATTAAATTTCAGAATGAGATGCTACATACTGAATTTCAAATGATTCAGGTGCAATATTCGTAATTATTTTTTATGCAATGAAAACTAACGCTAGTATATGTTTGTATGCCTGATTGTTATTTTCTTTCTAAGTTCAACCATGTTTTACACGTGCAGAGCAAGATAGACATATAAAAGCGTAACAGATGACGCCCGGTTAATGGTACCTGATATGGAAAAATAGGTGTTAAGCCTTTGCCTTCTCTTCGTTGAAGTTGTGCTTCTTCGATCTCTTTGAAGATGCACTTGTTTTGTTCAATTGTTCATAACATCATGATGAACCAAGAGGTACATGTATGTGATATATTGAGGACAGGTTCTGATGTATATACAAGAAAGCAAACTAGTAAATAACGGAAGATAGATGCCCATGAAAGCTTCTAGCACACAAGAACCATCAGTAAGTTGTGTTTCTATTGAATTGTAAATATCCGTACTTAGTAGTACTGTAGTAGAGTACTAGCTCCCTGAGAAGAGGCAGAACAATCCCCTGAGAAAAGCTGAACAAAAGACAAACCATTTGCAAAAGAGATTAGTGGTGGAGTAGATTTTGGAGAACACATTATCTTAACATAAAAACGCGAGAAATTTAGTTTTGAAGGATACAAAAGCTGAGGTAATTAAACACCTGATCTCAGGTCGTCTGACTTGATCCTGCAGTATCCCCTCACTGTCCCAAGCAACACAAATAACACCTGTTTCTTGGGATTTAGTTGCAGAGTGGTGGTGGTTCTGGCAGCTCCATTCATTAGAGCTCCCTTGTCACCTTAAAATGTGATTAGTATCCACCAATTTGGGTTGGTGTAGTGCTGGGTGAGTTGGAAACACATGCCCACAACATATAATATAAATCGAATATCCACCAATTGCAGTTTAAATACAGAAAGCTGGTGTGGAAATGTCACTTTCGAAACCACTCTATGGCAAGCCAGTCAAAGAAGGACGATCCTCACAAAAATCATAGTAATAATCTAGTTTTGCTTAGCTGTTGGTAGTCAGATGGGGGCTGTATGAGGACAGCGATTTCTAGTTTGGGGCTGTAGTTGCAAGTTGCAGATCGAAGTATCGAACAAGTTGAGCTCCCCCCTAATAGATCTAGTCTGGGCGGGCCAGGGAGAGAGAGAGAGAAAGGTAGGCGTGGGGGATCAGGGATGCGATACCTAACCTCGTCGTGGAGATGGAAGACGACGACCGCGCGGCTGCATCGTTGGGCCATGCGTCCGCGGCAGTATGCGGATGGGATAGGAGCCGGAGGCGAAGGGAGGGGAGCAAGCCGTGAGTCCTGGCGGCGGCAACCGGCAGCAACGGTCGCGCAAGCGGTGGCCGAAC
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| CDS seq | ACAAAACAAGTGCATCTTCAAAGAGATCGAAGAAGCACAACTTCAACGAAGAGAAGGCAAAGGCTTAACACCTATTTTTCCATATCAGGATTTGGGCCAAAGAGAAGCTTCCAAGTTTCAAACATATGGGCATGGAAGCTGCTGTATGGATTATTTAAGATTGTGGGAGACAAGTTAGCACCACTTGTAATAAGAGAGTATAGTTCTCTTATGGGTGTTACGAAAGATCTCCAGGAGCTTCAAGATTTAGTTGAGGAGATCAAAAGCGGGCTACAGGTAGCAGGTGATAATGCAATTGGTAATAAACCACCATCTAATTGGCTAAAAAAATTGAAAGATTTTGCTTACGATCTTGAAGATTTGGTACATGAATTTCATCTTCAGTCTGAGAAACATGACACAGATAATGATCGTGACAAGTATGCTGTGCTCAAATACATGCGCACAAAACCAAAACTAGCCATGTTTCAACTCAAAATGGCCAACAAGATAAAGACAATCAAAAACAGATTTGCTGCAATTGTCGAGCAAAGAGGCGATGTCAATACTATATTGAATGCTATACCAATCGATCATAATGTTCATAAAAACAAGATTATCAGTGAGCCATCCTTATTGGGCAATGTTGATGACTCAAAAATACATGTGAGATGA
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| Protein seq | TKQVHLQRDRRSTTSTKRRQRLNTYFSISGFGPKRSFQVSNIWAWKLLYGLFKIVGDKLAPLVIREYSSLMGVTKDLQELQDLVEEIKSGLQVAGDNAIGNKPPSNWLKKLKDFAYDLEDLVHEFHLQSEKHDTDNDRDKYAVLKYMRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLLGNVDDSKIHVR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0124100 | OsNip_12t0124100-01 | Chr12 | 1159628 | 1165291 | - | RAP2018-11-26 | ||
| CDS seq | ACAAAACAAGTGCATCTTCAAAGAGATCGAAGAAGCACAACTTCAACGAAGAGAAGGCAAAGGCTTAACACCTATTTTTCCATATCAGGATTTGGGCCAAAGAGAAGCTTCCAAGTTTCAAACATATGGGCATGGAAGCTGCTGTATGGATTATTTAAGATTGTGGGAGACAAGTTAGCACCACTTGTAATAAGAGAGTATAGTTCTCTTATGGGTGTTACGAAAGATCTCCAGGAGCTTCAAGATTTAGTTGAGGAGATCAAAAGCGGGCTACAGGTAGCAGGTGATAATGCAATTGGTAATAAACCACCATCTAATTGGCTAAAAAAATTGAAAGATTTTGCTTACGATCTTGAAGATTTGGTACATGAATTTCATCTTCAGTCTGAGAAACATGACACAGATAATGATCGTGACAAGTATGCTGTGCTCAAATACATGCGCACAAAACCAAAACTAGCCATGTTTCAACTCAAAATGGCCAACAAGATAAAGACAATCAAAAACAGATTTGCTGCAATTGTCGAGCAAAGAGGCGATGTCAATACTATATTGAATGCTATACCAATCGATCATAATGTTCATAAAAACAAGATTATCAGTGAGCCATCCTTATTGGGCAATGTTGATGACTCAAAAATACATGTGAGATGA
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| Protein seq | TKQVHLQRDRRSTTSTKRRQRLNTYFSISGFGPKRSFQVSNIWAWKLLYGLFKIVGDKLAPLVIREYSSLMGVTKDLQELQDLVEEIKSGLQVAGDNAIGNKPPSNWLKKLKDFAYDLEDLVHEFHLQSEKHDTDNDRDKYAVLKYMRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLLGNVDDSKIHVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.639905 | 0.096206 | 1.598928 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0124100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013500 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013660 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013560 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013380 | SBH | 0.0 | 0.280746 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013050 | SBH | 0.0 | 6.828154 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0021000 | RBH | 0.825035 | 9.066114 | 10.9517075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013220 | SBH | 0.0 | 0.248293 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0022100 | RBH | 0.143046 | 1.4429195 | 4.9281885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001590 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013530 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013390 | SBH | 0.0 | 11.243395 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013340 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001550 | RBH | 0.000000 | 0.324972 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G001480 | RBH | 0.058298 | 0.000000 | 0.348087 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001640 | RBH | 0.0 | 3.407386 | 0.0 |
