Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsGoSa_12g0013390 | OGI:12049180 | 16/16 | GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | Chr12:17694450-17699669 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcataaATataaccatcttgagaagaacagcatgatgcaactgtaacgcttagtgttgtagtcattattctgttgcctgcattattgttcaataatgcaaggttgataattttccatgcttttgcatcccataaatcatcaatcacaacaatgtatcggtcacaagatttttacatagatttagtaattcgttcttgaaggccacgaagttgataataatcgaaaattttggcaatattaacagtggttagctaagaaaatgctaacaaatcaagtcattacgataagaactggagaattgaaatggaagatttgagtgtgatggattagatagagagatggctcacgcataagatgatcaccaatatttggacaacgtctgcaagataaataagtttgtagactcaaatataatagttcttatttaatacttcttggatcgccacaatcaccaaatagtaaccgaggaaacaaacaaagaagcttcccaccttcattttaagaagagtaaattcagagaatcgcatattttgtcactgaattatcatgttgttacaacattagtgacatatttcagtttgttgcaatgataatggagaacattgtcacaaaaccgcaacttcatgcagaccccaaagttactttcacatggggcccacgtgtcattgaggtggtagccagcgagggacaagttagcacatgcattgtagtggcatgctgtgtcggcagctgctaagcccaccactgtgctatctacccatttggctacacagtcgcttatattCcccttgtccgatgatttagaactatccgctatattagcatcaacctcatcaatattttctaaTtttagttttgttcctctatctctagattgatcacaagcaaaccatgtagacataaactttggcaatgatgatatggagaatttaaacattttactattgccaataagaagtttaatctcgccaatcaaccccttagagttattcatgacaatattactaatgcatgaattatttttagatacattaaattgggaaataagtagattacctgtaaatgttaccttgcctgttgtgttggagaagcgtggtgatttcttcacatgaacaatgtctcgcttagccatgtgatggacctccaacgtcttctccgtgttctcaaggtcttgtgctccaccgatttgatgctcatcaatttccttggcacaaaattcatccggcagaacaaaaggttcttcaatttcagaaaactcaatcataggcaccgtcattttcttagccgataatcctacattattcggcTtttgttcaagtacaaaagttggttttgaccttttatttaaaacataagcatttaacctcttcatcatgtccctatatatttcttcttcaaggttctttctcttgaaactaaattcttgaaactaaattcctcacgaaattgctccctagccgaacatgctaatttaatgtcatcattttgaagcctatgttcagctttatgcattagctgtacatatgacccattctgtttaaaactatttacatttgatttcggcaatggagaataactaatgccgaaatctggctgagttggggataaattgtacactgtggaattttgtggagttacatgcatgcttagtgagttgtcattaatttggctataactattggtagaataacaagctgaattatgaacattatatcaatatagtctattatattgtgatccatttcactagcttcccaaaaacgacaataaaattgatgctctaactgagaccatgtatgaatagaatttggcataagcatgacaaaccaaataagagcatcaccagacaatgataggggaaataatcttaatttcaaaatatcattagagttagcttcaccacaatgcacacaagaaactgtcccatgtgttctattgctgtcctacaatcttttctagtaaatttaacaaaacaaggcacatagggacatgggactaaatcaaactcatcaggatatggctttcggtaggtgcccgctcttcccataagctccatccgaaagtgctcccttgttacactagccaatcgatcatatgtttgaacatgagaagtatttgatgcaacacacaatggctcatagcgactggctaaatgactagcatattcatatccattatttatcggcatactttgttgtgtggtcatatgttgtgaaatagttgccgataaattaaaaggtacatatgcatattgtatatagctagcattattacaagctaaatcatttaaattatttcgcatatataggctgtggcatattcctattagcatcaaattcacaatttaatgatctagaataattatttaaatcatcaatagccaatgcagtataaccacttaaattaggtctagcaacatctatatgagaattcgtggcacatattaaattattcggagaattaggcgtcgtatttgcaaactgtacctcgtgattggtgtatacatgttgctctacagcgctctggtacagctccatgcatttttcagcaagtctttgacttttcctggtgaaagattgctgtgtatacctagcgaaattccggagatattaacttgcacataccgatcgagagtctcctgtgtttcttgctttgcgtgtggttttcccaattccaggaaaactgatatcttcacctaactgcgcctagatcagtgtggattccgcgcggcaatgaccaaccacgtcaccaatcaaattaatcagataaacttaagcactggagatgaatatcagatcgattacggccaaaaaatttgacgaccaaaaacaaactagcaaaatattcggcagtactacagccaaatagatcgatcctggcggattgatttcggtcaaattaatatgaccgaaattattttccccagcggaatcatcaaaatatgttgacgctttattagtcaacacaagatcacctaatgatttgcagtgtagacaatagagtcgtcaaaattgatagatcaaaaccggctagtggaaccgatttcgagattaattcactttcgcggaatcaagtgactaatttacaagcaaattagcaaagaagataaatatcgtacttacgtgacgatgaacgactagtttccgagcaaactagcaaaggataaccttctcgctttcgttgagaagtaggacaatttttcagcgcAaaacgataaagattaaccaaattctaggttgttagaactcagccatgaaaatgaaatagaaaagaactgaaaagtaaaagacatgaatagcagattgaaattgttcagggttcctcaattgacctaaaactctaataatatatatagaggtacatgtattcggccctgtacacacgaacaaacttgcacgaatcctccggccgagtacgatcatatcttaacaaaactactgccaaaaatatttatctaaacctccctaatataaactaatctgctaattaatatggtatacaatcggatgccaaatccagaccatgtacatggtacagagcaacaaaatggcaagtgatcagtcccatctcggttacctgctgtgggatttcgcttcaacctgcatgcatccagtcccagtccacgactccaagtatagaagccaagcacacatgcatgatcaaatgataaaattaccctccaatttacatggacaaccatccaatgtgtcgcaaatttccgcgcatgtaaactgagttaattttccaagaaaaatcattagaccattacacaaataatttggcccgctcaagtgaaatcaactatgagaattatgatgtaaacaatatggtccgattgaaacaccactcatacttggtcattgcactcgagtcaacactcatcaagcttcaaaagagctaagggcaacacgagagggtcgtttgccctaacctagaattggttaattttgatccgtgcatcggctgagcggtattccagccaaatcagatcaccacagtgtagctggaccaaagtggtgggctgagggctgacgtggcatgccactagagtgtacgtgctaatgtttcatgcaagagtaaatttcagataactgcaagctattttatacaatctataagctgaaacaaacataatctaatataatttcactatggtttgcgaacgatagtagcagatatagtagtcaaagctagatcttaaaccatttcgaaactaaaaaacaccatttatttgcgtgtatcctatagataagaaagtcgttaatgtttacctaattaagatatacacatctcatttgcatcacgaaatagtatttgtaatttcattccacagttaccaaatctttttatagggtattaattcgcatgcatgcatatatattatcattgataatataaccaggcttaccttttattcttgagatgctctcggagtatatgaatgagtttcttttcatcattaccaggcggagtatgtgaagagatccctactccttcagcagtatcgtttaagaccttcttcatatcagggctttgtgaaactgacacaaaagctgcacaagaaaattggcttcgaattgtgtcatagacttggtttgcaagagtagtcttaccaagacctccacaaccaacaatagagaccacttttagagaccctttcatctccatagctagcagctcaatgatacgctccttaggaccgtcgatccccacaagtctaccaacctcttcgtagaatgccggcagcctgggatcaatgccaaaagtgctagagttgtgtgctaattgattaaaattatacctcttgtgcctctcgcttgcctcgattgcacagatcctgagctcttcgatctcattggcaatctaatggcgcaccttcagtttcttcaacttgcggaagtatttcttgaatcccatccttttcccatcatgctcatggtcaacacgagacatgaagtcattgatgcaatcttctaggtcataggctagctcgcgtaacttgtccctccagttcctcatttctgggttgagctgctgatcagaatccgcgagcatctcgagtgcggcactcatggtgctcaactcatctctcaagaacttgatctgcttgcgcacgcctttgagcttggcatactcttCGcccagcagcttggtgagcttggatagaaggggtttcatcatccccgtggtaacacccacaacagctgttgttgtagccat
More
|
||||||||||
| CDS seq | atggctacaacaacagctgttgtgggtgttaccacggggatgatgaaaccccttctatccaagctcaccaagctgctgggCGaagagtatgccaagctcaaaggcgtgcgcaagcagatcaagttcttgagagatgagttgagcaccatgagtgccgcactcgagatgctcgcggattctgatcagcagctcaacccagaaatgaggaactggagggacaagttacgcgagctagcctatgacctagaagattgcatcaatgacttcatgtctcgtgttgaccatgagcatgatgggaaaaggatgggattcaagaaatacttccgcaagttgaagaaactgaagattgccaatgagatcgaagagctcaggatctgtgcaatcgaggcaagcgagaggcacaagaggtataattttaatcaattagcacacaactctagcacttttggcattgatcccaggctgccggcattctacgaagaggttggtagacttgtggggatcgacggtcctaaggagcgtatcattgagctgctagctatggagatgaaagggtctctaaaagtggtctctattgttggttgtggaggtcttgcttttgtgtcagtttcacaaagccctgatatgaagaaggtcttaaacgatactgctgaaggagtagggatctcttcacatactccgcctggtaatgatgaaaagaaactcattcatatactccgagagcatctcaagaataaaaggcaacagaataatgactacaacactaagcgttacagttgcatcatgctgttcttctcaagatggttatATttatga
More
|
||||||||||
| Protein seq | MATTTAVVGVTTGMMKPLLSKLTKLLGEEYAKLKGVRKQIKFLRDELSTMSAALEMLADSDQQLNPEMRNWRDKLRELAYDLEDCINDFMSRVDHEHDGKRMGFKKYFRKLKKLKIANEIEELRICAIEASERHKRYNFNQLAHNSSTFGIDPRLPAFYEEVGRLVGIDGPKERIIELLAMEMKGSLKVVSIVGCGGLAFVSVSQSPDMKKVLNDTAEGVGISSHTPPGNDEKKLIHILREHLKNKRQQNNDYNTKRYSCIMLFFSRWLYL |
||||||||||
| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsGoSa_12g0013390 | OsGoSa_12g0013390.01 | Chr12 | 17694450 | 17699669 | - | NAM | ||
| CDS seq | atggctacaacaacagctgttgtgggtgttaccacggggatgatgaaaccccttctatccaagctcaccaagctgctgggCGaagagtatgccaagctcaaaggcgtgcgcaagcagatcaagttcttgagagatgagttgagcaccatgagtgccgcactcgagatgctcgcggattctgatcagcagctcaacccagaaatgaggaactggagggacaagttacgcgagctagcctatgacctagaagattgcatcaatgacttcatgtctcgtgttgaccatgagcatgatgggaaaaggatgggattcaagaaatacttccgcaagttgaagaaactgaagattgccaatgagatcgaagagctcaggatctgtgcaatcgaggcaagcgagaggcacaagaggtataattttaatcaattagcacacaactctagcacttttggcattgatcccaggctgccggcattctacgaagaggttggtagacttgtggggatcgacggtcctaaggagcgtatcattgagctgctagctatggagatgaaagggtctctaaaagtggtctctattgttggttgtggaggtcttgcttttgtgtcagtttcacaaagccctgatatgaagaaggtcttaaacgatactgctgaaggagtagggatctcttcacatactccgcctggtaatgatgaaaagaaactcattcatatactccgagagcatctcaagaataaaaggcaacagaataatgactacaacactaagcgttacagttgcatcatgctgttcttctcaagatggttatATttatga
More
|
|||||||
| Protein seq | MATTTAVVGVTTGMMKPLLSKLTKLLGEEYAKLKGVRKQIKFLRDELSTMSAALEMLADSDQQLNPEMRNWRDKLRELAYDLEDCINDFMSRVDHEHDGKRMGFKKYFRKLKKLKIANEIEELRICAIEASERHKRYNFNQLAHNSSTFGIDPRLPAFYEEVGRLVGIDGPKERIIELLAMEMKGSLKVVSIVGCGGLAFVSVSQSPDMKKVLNDTAEGVGISSHTPPGNDEKKLIHILREHLKNKRQQNNDYNTKRYSCIMLFFSRWLYL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 11.243395 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0467300 | SBH | 0.224593 | 0.315545 | 2.699600 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g30080 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0467300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0013500 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0013660 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0013560 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0013380 | SBH | 0.0 | 0.280746 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0013050 | SBH | 0.0 | 6.828154 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0248200 | SBH | 0.007606 | 2.348669 | 0.716548 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013220 | SBH | 0.0 | 0.248293 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0269100 | RBH | 0.111056 | 0.127368 | 0.0223805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0013190 | SBH | 0.0 | 0.105302 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0013530 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013340 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0013550 | SBH | 0.0 | 2.095912 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013250 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013070 | SBH | 0.0 | 4.456869 | 0.0 |
