Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0109300 | OGI:12001260 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:499852-502261 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAAAAGTTTTCACAATAATTACCACTGTTGAGAAGTCAAAAACATATATAGCAGTAGAACAAAAGAGAATGAAAATAAGTACAACATTCAAAAGAAGCATCAGAAGGATCAACAATTACCGGTGCAGATTGTCTGAAGGGGAAGAAATAGTTTATCCTACATGTGTGTGTCTTGGTTGGAACCAATCACTTGAAGAGATATATATTCCTTTCTGTTTAAATAATTGCACAAATCATGAAGCACTTGAAGGAATATTTAGCTGCAACTGCAATCCATCCTTTATTTGTGCTTTAAAAGTTGTGCATTTCAAAAGAAGTGAAGCATAGAAGTGCCTCCAAACATAATATCATCTGGTTTATACTCTCCCATCATCATCTGCTTTATACTCTTCTATCCACCAATCACAGCTCTCAACAAATTGTTGTCTACTTTCTAGTTCTACCAATAGTCATTGCAGGAGCAAGAACCATCTCTAAAACAATGAAATCGATTGTTATCTCGGACAATGATCTCCCGATGAGTTATCCTCGATATGAGTTTAATTGCAGTGTGACAGTCACTGCAAACTCTGAGGTTCTTGGTGACCCTAATGGTCTCCCCTGGTCCAGTGACGAGAAGGTTAAATGCAATTGCTAGTTTCTCACTATGATGCACTAGTGTGTGCTCCTTCTCTTCATCTTCAACATCAAACATCACCACTTCTGTTGTTGGTTCATAACCCATGGTTTTCATTTCCAATCCTAATTCGTCGAGCTTTTTGTAAATCTGATCTGAAAGAGGATGTGACTTGTCTCCGACACGGAACTCATGGACCTTACCTTCAAACTCAACCCAGCTGCATGCAGGAACCTTCTCGACCCCTTTTTCCTTCATGTCCAATCTAAGCTTTGCTGCGTCCTCCCATCTGCCTCTGTTAGAGTATATGTTAGAGAGCATGACATAGTTCCCAGAATTCCAGGGCTCCAGTCGAATGAGCTGCGTCAATACATGTTCAGCAAGCTCTGCATTTCGGTGAATCTTGCAGCCACCAAGAAGTGCACCCAATATGACAGCATTTGCTGGCATCGGCATATCATCAATAAGCTGATGAGCCTCCTGCAACAACCCAGCGCGACTGAGCAGATCGACTATACAACCGTAATGCTCAATCCTAGGGCTGATGTGGTATAGCTTAGTCATGTTATGGAAATACCGTCGCCCATCTTGAATGAGGCCAGTGTGTGTACAGCTGCAGAGCAAGCCAATGAAAGTATTGTCATTCAATTTCACACCGGACTTCTCCATCTGACCGATAAGGGTAAATGCAGTCTTTTCATGGCCAGTCATGCCAAGCCCCAAGATCATGGCGTTCCAAACAATAATGTCCTTCTTCCTCATTTGCTGGAACACCACCCATGCCTCGGCCGTGCTCCCACACTTGGCATACATATCAATCAATGCAGTCCCTAGGACTGGATTGTCAAGAAACTCATCCCAGTCCACCATCCTGATTGCCTGCCGTCCAAGATCCAATGCACCCAACCTTGTGCAGGCTGATAGCGCCCCAGCTACCGCATAGCAATCTGGCCTCACTCCCTCTGCCTGCATTGCAAGGAAAAGGTCCAGAGCCTCTCGTGGGTGGCCGTTGGAAGCATATCCCCCAACCATGGCGCCCCAGGCCACTGCATCCTTGTCCCGCATCTTGTCAAACACCTCCCTCGCCTTTGCCATCTCCCCACACTTGACATACAAATCTACCGCCGCAGTGGCCACGAACACGCTCTGTGCAATCCCCTCCTGCTCGGCAGCCCTCCAAACAGTCTCCCCAGTTGCCAAATCCGCAACCCGAGCACACGCAGTCAGGACACGCACGGCCGTGAAGCTGTCCGGTCGCATACCATTCGCAAAAGCATTCCTTGCGACATGGACGGCTTCCCTGAGGTCCCCAGCATCCATGTAGGCAGTGATGAGAGCGGTCCAGGAGACGGTGCTGGGGTGTGGCATTTCGTCGAACACCCTCTGGGCTCGGTGTAGGAGGCCGCATCTTGCGTAGAGGGTGAGGAGGGAGGTGAGGACATGGGGGTTGGTGTGGGAGGGAAGCTTGAGGGAGCGCGCGTGGAGCTGCTCGCCCGCGCGGAGAGGGTGCGGAAGGCGGGAGGCCGACTTGAGGGCGATGGGGAAGGTGAGGTGGGAGGGGTTGGGGAGGAGGCAGTGGAGGCGGAGCGCGTGGAGGTGAAGGGCGGAGGAGGAGAGGGCGCGGAGGAGGAGCGGGGAGAGGGCGGCGAGGAGGTCGAGGCGGAGGAGGCGGGCGTGGAGGAGCTTGACGGTGAGCGGCGGGGGGCGGTTGCTGGGGGCGACGCCGGCGAGGAGTAGCCGCCTGATGGCATCGCCCGACATAAATAAAGCGCCAAAGCCAGTCAACGAGTGAAC
More
|
||||||||||
| CDS seq | GTTCACTCGTTGACTGGCTTTGGCGCTTTATTTATGTCGGGCGATGCCATCAGGCGGCTACTCCTCGCCGGCGTCGCCCCCAGCAACCGCCCCCCGCCGCTCACCGTCAAGCTCCTCCACGCCCGCCTCCTCCGCCTCGACCTCCTCGCCGCCCTCTCCCCGCTCCTCCTCCGCGCCCTCTCCTCCTCCGCCCTTCACCTCCACGCGCTCCGCCTCCACTGCCTCCTCCCCAACCCCTCCCACCTCACCTTCCCCATCGCCCTCAAGTCGGCCTCCCGCCTTCCGCACCCTCTCCGCGCGGGCGAGCAGCTCCACGCGCGCTCCCTCAAGCTTCCCTCCCACACCAACCCCCATGTCCTCACCTCCCTCCTCACCCTCTACGCAAGATGCGGCCTCCTACACCGAGCCCAGAGGGTGTTCGACGAAATGCCACACCCCAGCACCGTCTCCTGGACCGCTCTCATCACTGCCTACATGGATGCTGGGGACCTCAGGGAAGCCGTCCATGTCGCAAGGAATGCTTTTGCGAATGGTATGCGACCGGACAGCTTCACGGCCGTGCGTGTCCTGACTGCGTGTGCTCGGGTTGCGGATTTGGCAACTGGGGAGACTGTTTGGAGGGCTGCCGAGCAGGAGGGGATTGCACAGAGCGTGTTCGTGGCCACTGCGGCGGTAGATTTGTATGTCAAGTGTGGGGAGATGGCAAAGGCGAGGGAGGTGTTTGACAAGATGCGGGACAAGGATGCAGTGGCCTGGGGCGCCATGGTTGGGGGATATGCTTCCAACGGCCACCCACGAGAGGCTCTGGACCTTTTCCTTGCAATGCAGGCAGAGGGAGTGAGGCCAGATTGCTATGCGGTAGCTGGGGCGCTATCAGCCTGCACAAGGTTGGGTGCATTGGATCTTGGACGGCAGGCAATCAGGATGGTGGACTGGGATGAGTTTCTTGACAATCCAGTCCTAGGGACTGCATTGATTGATATGTATGCCAAGTGTGGGAGCACGGCCGAGGCATGGGTGGTGTTCCAGCAAATGAGGAAGAAGGACATTATTGTTTGGAACGCCATGATCTTGGGGCTTGGCATGACTGGCCATGAAAAGACTGCATTTACCCTTATCGGTCAGATGGAGAAGTCCGGTGTGAAATTGAATGACAATACTTTCATTGGCTTGCTCTGCAGCTGTACACACACTGGCCTCATTCAAGATGGGCGACGGTATTTCCATAACATGACTAAGCTATACCACATCAGCCCTAGGATTGAGCATTACGGTTGTATAGTCGATCTGCTCAGTCGCGCTGGGTTGTTGCAGGAGGCTCATCAGCTTATTGATGATATGCCGATGCCAGCAAATGCTGTCATATTGGGTGCACTTCTTGGTGGCTGCAAGATTCACCGAAATGCAGAGCTTGCTGAACATGTATTGACGCAGCTCATTCGACTGGAGCCCTGGAATTCTGGGAACTATGTCATGCTCTCTAACATATACTCTAACAGAGGCAGATGGGAGGACGCAGCAAAGCTTAGATTGGACATGAAGGAAAAAGGGGTCGAGAAGGTTCCTGCATGCAGCTGGGTTGAGTTTGAAGGTAAGGTCCATGAGTTCCGTGTCGGAGACAAGTCACATCCTCTTTCAGATCAGATTTACAAAAAGCTCGACGAATTAGGATTGGAAATGAAAACCATGGGTTATGAACCAACAACAGAAGTGGTGATGTTTGATGTTGAAGATGAAGAGAAGGAGCACACACTAGTGCATCATAGTGAGAAACTAGCAATTGCATTTAACCTTCTCGTCACTGGACCAGGGGAGACCATTAGGGTCACCAAGAACCTCAGAGTTTGCAGTGACTGTCACACTGCAATTAAACTCATATCGAGGATAACTCATCGGGAGATCATTGTCCGAGATAACAATCGATTTCATTGTTTTAGAGATGGTTCTTGCTCCTGCAATGACTATTGGTAG
More
|
||||||||||
| Protein seq | VHSLTGFGALFMSGDAIRRLLLAGVAPSNRPPPLTVKLLHARLLRLDLLAALSPLLLRALSSSALHLHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW |
||||||||||
| Function | Putative pentatricopeptide repeat-containing protein At3g08820 [UniProtKB/Swiss-Prot:Q9SR82] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0109300 | OsNip_12t0109300-01 | Chr12 | 499852 | 502261 | - | RAP2018-11-26 | ||
| CDS seq | GTTCACTCGTTGACTGGCTTTGGCGCTTTATTTATGTCGGGCGATGCCATCAGGCGGCTACTCCTCGCCGGCGTCGCCCCCAGCAACCGCCCCCCGCCGCTCACCGTCAAGCTCCTCCACGCCCGCCTCCTCCGCCTCGACCTCCTCGCCGCCCTCTCCCCGCTCCTCCTCCGCGCCCTCTCCTCCTCCGCCCTTCACCTCCACGCGCTCCGCCTCCACTGCCTCCTCCCCAACCCCTCCCACCTCACCTTCCCCATCGCCCTCAAGTCGGCCTCCCGCCTTCCGCACCCTCTCCGCGCGGGCGAGCAGCTCCACGCGCGCTCCCTCAAGCTTCCCTCCCACACCAACCCCCATGTCCTCACCTCCCTCCTCACCCTCTACGCAAGATGCGGCCTCCTACACCGAGCCCAGAGGGTGTTCGACGAAATGCCACACCCCAGCACCGTCTCCTGGACCGCTCTCATCACTGCCTACATGGATGCTGGGGACCTCAGGGAAGCCGTCCATGTCGCAAGGAATGCTTTTGCGAATGGTATGCGACCGGACAGCTTCACGGCCGTGCGTGTCCTGACTGCGTGTGCTCGGGTTGCGGATTTGGCAACTGGGGAGACTGTTTGGAGGGCTGCCGAGCAGGAGGGGATTGCACAGAGCGTGTTCGTGGCCACTGCGGCGGTAGATTTGTATGTCAAGTGTGGGGAGATGGCAAAGGCGAGGGAGGTGTTTGACAAGATGCGGGACAAGGATGCAGTGGCCTGGGGCGCCATGGTTGGGGGATATGCTTCCAACGGCCACCCACGAGAGGCTCTGGACCTTTTCCTTGCAATGCAGGCAGAGGGAGTGAGGCCAGATTGCTATGCGGTAGCTGGGGCGCTATCAGCCTGCACAAGGTTGGGTGCATTGGATCTTGGACGGCAGGCAATCAGGATGGTGGACTGGGATGAGTTTCTTGACAATCCAGTCCTAGGGACTGCATTGATTGATATGTATGCCAAGTGTGGGAGCACGGCCGAGGCATGGGTGGTGTTCCAGCAAATGAGGAAGAAGGACATTATTGTTTGGAACGCCATGATCTTGGGGCTTGGCATGACTGGCCATGAAAAGACTGCATTTACCCTTATCGGTCAGATGGAGAAGTCCGGTGTGAAATTGAATGACAATACTTTCATTGGCTTGCTCTGCAGCTGTACACACACTGGCCTCATTCAAGATGGGCGACGGTATTTCCATAACATGACTAAGCTATACCACATCAGCCCTAGGATTGAGCATTACGGTTGTATAGTCGATCTGCTCAGTCGCGCTGGGTTGTTGCAGGAGGCTCATCAGCTTATTGATGATATGCCGATGCCAGCAAATGCTGTCATATTGGGTGCACTTCTTGGTGGCTGCAAGATTCACCGAAATGCAGAGCTTGCTGAACATGTATTGACGCAGCTCATTCGACTGGAGCCCTGGAATTCTGGGAACTATGTCATGCTCTCTAACATATACTCTAACAGAGGCAGATGGGAGGACGCAGCAAAGCTTAGATTGGACATGAAGGAAAAAGGGGTCGAGAAGGTTCCTGCATGCAGCTGGGTTGAGTTTGAAGGTAAGGTCCATGAGTTCCGTGTCGGAGACAAGTCACATCCTCTTTCAGATCAGATTTACAAAAAGCTCGACGAATTAGGATTGGAAATGAAAACCATGGGTTATGAACCAACAACAGAAGTGGTGATGTTTGATGTTGAAGATGAAGAGAAGGAGCACACACTAGTGCATCATAGTGAGAAACTAGCAATTGCATTTAACCTTCTCGTCACTGGACCAGGGGAGACCATTAGGGTCACCAAGAACCTCAGAGTTTGCAGTGACTGTCACACTGCAATTAAACTCATATCGAGGATAACTCATCGGGAGATCATTGTCCGAGATAACAATCGATTTCATTGTTTTAGAGATGGTTCTTGCTCCTGCAATGACTATTGGTAG
More
|
|||||||
| Protein seq | VHSLTGFGALFMSGDAIRRLLLAGVAPSNRPPPLTVKLLHARLLRLDLLAALSPLLLRALSSSALHLHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.394781 | 0.908524 | 0.247600 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0109600 | RBH | 0.800143 | 0.143449 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01850 | RBH | 0.571067 | 0.514497 | 0.060594 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0109300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000560 | RBH | 0.0 | 0.0 | 0.713637 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000750 | RBH | 0.0 | 1.815385 | 0.270186 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000720 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000680 | RBH | 0.000000 | 2.443809 | 1.649337 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0008400 | SBH | 0.65029 | 1.4106965 | 0.677918 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000680 | SBH | 0.019240 | 0.061294 | 0.022284 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0008400 | RBH | 0.456617 | 1.099297 | 3.0862795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000570 | RBH | 0.0 | 0.128706 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000690 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000680 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000680 | RBH | 0.181261 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000700 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000590 | RBH | 0.238607 | 0.0 | 0.295703 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000750 | RBH | 0.0 | 0.0 | 0.654096 |
