Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsAzu_12g0000560 | OGI:12001260 | 16/16 | Azucena | AzucenaRS1 | Gramene(+IsoSeq) | Chr12:405602-406817 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGTTATGGAAATACCGTCGCCCATCTTGAATGAGGCCAGTGTGTGTACAGCTGCAGAGCAAGCCAATGAAAGTATTGTCATTCAATTTCACACCGGACTTCTCCATCTGACCGATAAGGGTAAATGCAGTCTTTTCATGGCCAGTCATGCCAAGCCCCAAGATCATGGCGTTCCAAACAATAATGTCCTTCTTCCTCATTTGCTGGAACACCACCCATGCCTCGGCCGTGCTCCCACACTTGGCATACATATCAATCAATGCAGTCCCTAGGACTGGATTGTCAAGAAACTCATCCCAGTCCACCATCCTGATTGCCTGCCGTCCAAGATCCAATGCACCCAACCTTGTGCAGGCTGATAGCGCCCCAGCTACCGCATAGCAATCTGGCCTCACTCCCTCTGCCTGCATTGCAAGGAAAAGGTCCAGAGCCTCTCGTGGGTGGCCGTTGGAAGCATATCCCCCAACCATGGCGCCCCAGGCCACTGCATCCTTGTCCCGCATCTTGTCAAACACCTCCCTCGCCTTTGCCATCTCCCCACACTTGACATACAAATCTACCGCCGCAGTGGCCACGAACACGCTCTGTGCAATCCCCTCCTGCTCGGCAGCCCTCCAAACAGTCTCCCCAGTTGCCAAATCCGCAACCCGAGCACACGCAGTCAGGACACGCACGGCCGTGAAGCTGTCCGGTCGCATACCATTCGCAAAAGCATTCCTTGCGACATGGACGGCTTCCCTGAGGTCCCCAGCATCCATGTAGGCAGTGATGAGAGCGGTCCAGGAGACGGTGCTGGGGTGTGGCATTTCGTCGAACATCCTCTGGGCTCGGTGTAGGAGGCCGCATCTTGCGTAGAGGGTGAGGAGGGAGGTGAGGACATGGGGGTTGGTGTGGGAGGGAAGCTTGAGGGAGCGCGCGTGGAGCTGCTCGCCCGCGCGGAGAGGGTGCGGAAGGCGGGAGGCCGACTTGAGGGCGATGGGGAAGGTGAGGTGGGAGGGGTTGGGGAGGAGGCAGTGGAGGCGGAGCGCGTGGAGGTGAAGGGCGGAGGAGGAGAGGGCGCGGAGGAGGAGCGGGGAGAGGGCGGCGAGGAGGTCGAGGCGGAGGAGGCGGGCGTGGAGGAGCTTGACGGTGAGCGGCGGGGGGCGGTTGCTGGGGGCGACGCCGGCGAGGAGTAGCCGCCTGATGGCATCGCCCGACATAAATAAAGCGCCAAA
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| CDS seq | ATGTCGGGCGATGCCATCAGGCGGCTACTCCTCGCCGGCGTCGCCCCCAGCAACCGCCCCCCGCCGCTCACCGTCAAGCTCCTCCACGCCCGCCTCCTCCGCCTCGACCTCCTCGCCGCCCTCTCCCCGCTCCTCCTCCGCGCCCTCTCCTCCTCCGCCCTTCACCTCCACGCGCTCCGCCTCCACTGCCTCCTCCCCAACCCCTCCCACCTCACCTTCCCCATCGCCCTCAAGTCGGCCTCCCGCCTTCCGCACCCTCTCCGCGCGGGCGAGCAGCTCCACGCGCGCTCCCTCAAGCTTCCCTCCCACACCAACCCCCATGTCCTCACCTCCCTCCTCACCCTCTACGCAAGATGCGGCCTCCTACACCGAGCCCAGAGGATGTTCGACGAAATGCCACACCCCAGCACCGTCTCCTGGACCGCTCTCATCACTGCCTACATGGATGCTGGGGACCTCAGGGAAGCCGTCCATGTCGCAAGGAATGCTTTTGCGAATGGTATGCGACCGGACAGCTTCACGGCCGTGCGTGTCCTGACTGCGTGTGCTCGGGTTGCGGATTTGGCAACTGGGGAGACTGTTTGGAGGGCTGCCGAGCAGGAGGGGATTGCACAGAGCGTGTTCGTGGCCACTGCGGCGGTAGATTTGTATGTCAAGTGTGGGGAGATGGCAAAGGCGAGGGAGGTGTTTGACAAGATGCGGGACAAGGATGCAGTGGCCTGGGGCGCCATGGTTGGGGGATATGCTTCCAACGGCCACCCACGAGAGGCTCTGGACCTTTTCCTTGCAATGCAGGCAGAGGGAGTGAGGCCAGATTGCTATGCGGTAGCTGGGGCGCTATCAGCCTGCACAAGGTTGGGTGCATTGGATCTTGGACGGCAGGCAATCAGGATGGTGGACTGGGATGAGTTTCTTGACAATCCAGTCCTAGGGACTGCATTGATTGATATGTATGCCAAGTGTGGGAGCACGGCCGAGGCATGGGTGGTGTTCCAGCAAATGAGGAAGAAGGACATTATTGTTTGGAACGCCATGATCTTGGGGCTTGGCATGACTGGCCATGAAAAGACTGCATTTACCCTTATCGGTCAGATGGAGAAGTCCGCTGTACACACACTGGCCTCATTCAAGATGGGCGACGGTATTTCCATAACATGA
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| Protein seq | MSGDAIRRLLLAGVAPSNRPPPLTVKLLHARLLRLDLLAALSPLLLRALSSSALHLHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRMFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSAVHTLASFKMGDGISIT |
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| Function | Putative pentatricopeptide repeat-containing protein At3g08820 [UniProtKB/Swiss-Prot:Q9SR82] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsAzu_12g0000560 | OsAzu_12g0000560.01 | Chr12 | 405602 | 406817 | - | NAM | ||
| CDS seq | ATGTCGGGCGATGCCATCAGGCGGCTACTCCTCGCCGGCGTCGCCCCCAGCAACCGCCCCCCGCCGCTCACCGTCAAGCTCCTCCACGCCCGCCTCCTCCGCCTCGACCTCCTCGCCGCCCTCTCCCCGCTCCTCCTCCGCGCCCTCTCCTCCTCCGCCCTTCACCTCCACGCGCTCCGCCTCCACTGCCTCCTCCCCAACCCCTCCCACCTCACCTTCCCCATCGCCCTCAAGTCGGCCTCCCGCCTTCCGCACCCTCTCCGCGCGGGCGAGCAGCTCCACGCGCGCTCCCTCAAGCTTCCCTCCCACACCAACCCCCATGTCCTCACCTCCCTCCTCACCCTCTACGCAAGATGCGGCCTCCTACACCGAGCCCAGAGGATGTTCGACGAAATGCCACACCCCAGCACCGTCTCCTGGACCGCTCTCATCACTGCCTACATGGATGCTGGGGACCTCAGGGAAGCCGTCCATGTCGCAAGGAATGCTTTTGCGAATGGTATGCGACCGGACAGCTTCACGGCCGTGCGTGTCCTGACTGCGTGTGCTCGGGTTGCGGATTTGGCAACTGGGGAGACTGTTTGGAGGGCTGCCGAGCAGGAGGGGATTGCACAGAGCGTGTTCGTGGCCACTGCGGCGGTAGATTTGTATGTCAAGTGTGGGGAGATGGCAAAGGCGAGGGAGGTGTTTGACAAGATGCGGGACAAGGATGCAGTGGCCTGGGGCGCCATGGTTGGGGGATATGCTTCCAACGGCCACCCACGAGAGGCTCTGGACCTTTTCCTTGCAATGCAGGCAGAGGGAGTGAGGCCAGATTGCTATGCGGTAGCTGGGGCGCTATCAGCCTGCACAAGGTTGGGTGCATTGGATCTTGGACGGCAGGCAATCAGGATGGTGGACTGGGATGAGTTTCTTGACAATCCAGTCCTAGGGACTGCATTGATTGATATGTATGCCAAGTGTGGGAGCACGGCCGAGGCATGGGTGGTGTTCCAGCAAATGAGGAAGAAGGACATTATTGTTTGGAACGCCATGATCTTGGGGCTTGGCATGACTGGCCATGAAAAGACTGCATTTACCCTTATCGGTCAGATGGAGAAGTCCGCTGTACACACACTGGCCTCATTCAAGATGGGCGACGGTATTTCCATAACATGA
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| Protein seq | MSGDAIRRLLLAGVAPSNRPPPLTVKLLHARLLRLDLLAALSPLLLRALSSSALHLHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRMFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSAVHTLASFKMGDGISIT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.713637 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0109300 | RBH | 1.394781 | 0.908524 | 0.247600 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01850 | RBH | 0.571067 | 0.514497 | 0.060594 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0109300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000670 | RBH | 0.0 | 0.000000 | 0.184960 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000750 | RBH | 0.0 | 1.815385 | 0.270186 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000720 | RBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000680 | RBH | 0.000000 | 2.443809 | 1.649337 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0007800 | RBH | 0.5504495 | 1.2632265 | 0.3472905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0000650 | RBH | 0.000000 | 0.298167 | 0.057133 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0008400 | RBH | 0.456617 | 1.099297 | 3.0862795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000570 | RBH | 0.0 | 0.128706 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000670 | RBH | 0.251764 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000680 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000680 | RBH | 0.181261 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000700 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000590 | RBH | 0.238607 | 0.0 | 0.295703 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000750 | RBH | 0.0 | 0.0 | 0.654096 |
