Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0108100 | OGI:11001480 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:439128-443649 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAAGTCAATTTTTCTTTCATTTGCCTCTTTATACTCTTAGAGTATACAGAAAATATGAAAAAGTTATTTCATTGGTTTCTTCATGCACTTCCTCACACCAGCAACCATACCAGCCACTAGCTTCTAAATAATAGCTTTTATGCTCTCATGTGCATCCTTCAACTATCTATCACACACAAACTACTGTACATGTATCACACACCAGCACTGTACATGTTTCAAGAAATATACAAATATGTGTAACAGCAATGGCCGCTCCCCCAGCCTCCCAGGGAACAAAAAAATTGATCAGGTGAAGAGAAATAATAAAAGAGAAACAAAACAATTGACCAATTCATTATGTATTGAGAGCATCGCAGGTAACTCCATAACTTCCACTCTAGTATGCTTTTCACTTTTCACTTGGGGGGAAATGATCGATTCTTATACCGAGGTGGCCTCATCTCATTTTCAGGGGCATCACTCTTGCCGCTGCTGCTCTTGCCTCTTAATGGCTCGGTTTCTGAATTATTAGAGATGTGGTTCTGTCGTTGTCTTCTTTCCTGCAAATCAGTTGACAAGTGTTTAATTCATGAGGCAATGATATAATAAATCCATGATTTCATTATGATAAACATTAATACCACGTTATGCAATGCTCTCTATGTCTGATAATGCTGATAAGACAGGTATACATGATATAATCAAATAAGATTGCTCACGTGGTCCATATGTCACTAATTTTACTGTGAGATGAACTTTGGATGTACTTATAACACAATATAGCAGATATGCATGATTTCCAGGTAAATCACTAATCGTACTCTTTAGGTAAAGGAAGAGTTTACAGCTACAGCATTTGCATCTGATATGCACACAGCTATATGAATATGTCACTTATCATATGTATATTTTTGTCACGAATCAAACCTCTTGAGGAATGGGTTCATTAGAGTCCAACATCCGGACCACCTGGTCCATCCTTGGTCTCTTCTCAGAATTCAAATCGATGCACCTCAGAGCTGTCAAAAGGGCACGTTTGAGCTCCTTTGTCGATGGTCTTCTCTCCAGGTTTGGATCAACAACTTCTTCTGATCGTCTGTTGGCAACCATCATTTTAAGCCAGTCAACTAGGTTTACCTACAAATGATCAGTAGTGTGTTACAGTACTTGTCAAATCATAAGTTCATAGCTTCTCGATTGCTTCATAAGTGATTGTAGACTGTAGTTGCATGCTTTTATGTAATAACTTGGTACCGAACAATACAGGAAATCGATGTCAACAGGTATTACCTCATCTGGAGGGCGATCATAGTCAATGGGATCTCTACCTGTAATAGCTTCCAGCAGAACCACCCCAAAACTGTAGACATCACTCTTTTCATTCAAAAGTCCACTGTTAGCATACTCGGGCGCAACATAGCTGCAAAATAATAACACAATTGTTGAGTACCATTAGTGAATAGCACCAACAGAATTTTTCTGAAATTACAGTGGCTAAGATTTGAACATAATACAAAGAGAACATGCCTCAATTCATTATACAAAGGCATGAAAAACTTACCCAAAAGTACCCATAACTCGAGTAGCAATATGACTTTTACCAGCACCTAGCATCTTGGCCAAACCAAAGTCAGATATTTTGGCGTTAAACTCATCATCAATCAATATATTACTGGCCTTGATATCACGATGCACAACTTTTGGTTCAATTGCCTCATGTAAGTAAGCAAGGCTGCAAATGTGGTGGTTCTTACCAAATTAGTATTTGCCAAGCAATAAGATGATACAATCTATACTTGATTTATATTCATGATAGTATAGACAACGACTACTTGTGCATAGTAGTGACTAGTAAGCCTAAAATCACAAAGCTGTCAAGATTGTAACATGCACAACAATTTTTAATAGAGCAGCTATCAAGATTGAATGTGCTTGTGTGAATCAATCAGAAGGCGACATTTTTAGTTCTAAGGCATTTAATGGAATAGATAGAGACCCAATAAGTTCACAGTTCGCACCAAGCAAAATCACAAATACAATGTTGACAGCAAACAATTGATCTAGAATGGGCATTTGAATCCACAAGAAGCAATAGTTTAGACTCAGTGAAGGAGTTACTCACGCCTTTGCAGTACCCAAAAGAATTTTCATGCGCGCTAGCCAAGTGAGAGAACTATATTGGGATAACTCTCCATGTAACCAACTTTCAAGATTCCCATTGTTGACATACTCATACACAAGCATCCTGATTATCCACACACAACAAACAATTTCAGTTAAGATACAACAGGTCATAATCTAAGCAATGAGTCCTAATAATACCCATACCTTTGAGTGCCTTCAACACAGTACCCCAAAAGGCGAACCAAATTCTTGTGTCGGACATGACCAATTGCTTCAACTTCCACTCTGAATTCTCTCTCAGCTTGTCCTCTGCACAGGGCAAGTAGTCATAGCTTAAGTAAAAGGAAGGACAACAAACTGACCCATGCACTGCCACTGCATCACCAAAGAATTGTTATAAGAAAAAATGGAAAATACTCACAGATTGTTAAGGATTTTTTTGACAGCCACTGGGGTGCCATTTGATAATCTGCCACGGTAGACAACACCATACCCACCCTCACCAATTACATTATCCTTTGAAAAACAGTTGGTTGCAAGTTCCAGATCCCTGAGAGTGAACCAATGACCCCAGCCAAGGTAAGAGAACTCAGGTAAGCCTGGCAAGGGAACAGAGTCGGCGGGAGCATGCGAGGAAGACTGTTCACATGTGGAAACAGATTGAATTCCATCATAGTTGTCCACATAATGAAGAGGAACAGAAGAACTGTTATCTTCTCCTTGTATCGTCTTGTCCTCTTGAGCAAACTGATTCACATCTTTATCCACTGGTTCAACAGGTTCATTCTGAATGGCGAGTAGAAGTCCATCATGTACAACGAAATCATTGGGCAAAAATTCCTCCACTGCCCTCACTTCCTTGATATCTTTGGATGCAGAAGGTATTTGGGTAATTGGAATTTCCTTGAATGTCCTACGTGACCGTTTGATCCAAGTTTGTATGGTGAGGCATACAATAAGGATGAGAAGAACACCAAGTAGGGATGCTCCAACAGATATCCCAATTACAACCCAAAGTTTCAGGCCAAAAACAATTGTTCTCTCATGAAGAGAGTCTGTTAGAGTGGAGTTTGACGACATCTTCGGATCATCAAGTACCTAAATGGGGAAGATAAGAACATGTCACTCACAAATGCAAATCACCATTTCCCTCAAACATAAAAAAAGAGTGCATTTCTGCAAGACCATATAACACATATAATATATGATTCTGATAGACCATGACAGTAAAGTAGAAAGAAATCATCAAAAAGAGTTACATACATATAAGCTTGCTAGCCGATCAAATGTTCTTAGGATTGCCACAAAGACAAAGGCATGGAAATTTAACAGAATGGTCAGGAACACTACAACTCGTTGAGTCGGCAACACTAGTGGTCATGAGAAAGCTACATGGTAGCAACCAGATAATGACCATGAGTTCAAGACAACACATCGCCATTTGGACAGTATCAATTATCAATGAAGCAGCTCTGACCTGTCAACTACCGTTCCCACTTATTGTTCAGAATCGAACAGCTACAGGTTGACATAATTAATTGAGTTATAAACACAAGCCCTTAAGATAGATGATTACAGGCGTTTGAAGATGTAAGTTAAATTTTCCACTAGATCTTACCAAGGGAAAAAAATACTAGTAAATATGGGCTACCATTGCAACAGTTGGAAAGATAGAATATTTACAGAGGCAGTCAACTTGGAGTGGATGACAAGAAAGAAAGAAAGAGTAACCAACCTTTATTGGATACAATGGTGAGGAACCAGAAATTGGCCTTCAAGAAGTGAATACGGTAGTGAATGCTGAAGAGCGACCTGAATCCAGAGCCATGGGGAGTGGCAGGCAGAGGGGAAACCTGTAGATCAGAGGAAAGGGTATCCACGCAAATCTGAGGGTAGGGGGGAATGGGAATGAGAGGAAGAAGAAAGCAAATGTGGACGCATACCTGAGCGAGATCCAGACGCAGGAAGAAGAGAAAGCTTGCACTTTGGAGATTGCTTGCTTGGTGCAGGACTGCAGGTGAGGTAGGGGTGATAAGAAGACGACGATAGTGGTGGAGTGTGGCAGCAGCGGCGGCAGGAGGAGAGGAGTTATCATGTGAGGTCGGTAGGTGATGGGAGTGATGGAGAAGAAACCAACCTTATTACGCTTTCTTTTTTTTTCCTCCCGAGGATTAGACTTGCACTGCAAAAACAATTCCAAGATTTGGGTTCGGTTCCTATGGATTCAATCACAAGGAACCAGTCACAGCGAAATCTGCGACGGAAGAATGGGGACGACGGCGGCGAGCTTGGTTTCCCTGAGACTGCTCGCCTCCGCTTGAGGCCGCCACCTTGCAGCTGCTGCCTGCTCCCACTGCCGCCTGGCGGAGGCTGCGGCGCCGTCCGTTTGCTGGAGTCTCTGCCGACGGCTTCCCT
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| CDS seq | ATGTCGTCAAACTCCACTCTAACAGACTCTCTTCATGAGAGAACAATTGTTTTTGGCCTGAAACTTTGGGTTGTAATTGGGATATCTGTTGGAGCATCCCTACTTGGTGTTCTTCTCATCCTTATTGTATGCCTCACCATACAAACTTGGATCAAACGGTCACGTAGGACATTCAAGGAAATTCCAATTACCCAAATACCTTCTGCATCCAAAGATATCAAGGAAGTGAGGGCAGTGGAGGAATTTTTGCCCAATGATTTCGTTGTACATGATGGACTTCTACTCGCCATTCAGAATGAACCTGTTGAACCAGTGGATAAAGATGTGAATCAGTTTGCTCAAGAGGACAAGACGATACAAGGAGAAGATAACAGTTCTTCTGTTCCTCTTCATTATGTGGACAACTATGATGGAATTCAATCTGTTTCCACATGTGAACAGTCTTCCTCGCATGCTCCCGCCGACTCTGTTCCCTTGCCAGGCTTACCTGAGTTCTCTTACCTTGGCTGGGGTCATTGGTTCACTCTCAGGGATCTGGAACTTGCAACCAACTGTTTTTCAAAGGATAATGTAATTGGTGAGGGTGGGTATGGTGTTGTCTACCGTGGCAGATTATCAAATGGCACCCCAGTGGCTGTCAAAAAAATCCTTAACAATCTAGGACAAGCTGAGAGAGAATTCAGAGTGGAAGTTGAAGCAATTGGTCATGTCCGACACAAGAATTTGGTTCGCCTTTTGGGGTACTGTGTTGAAGGCACTCAAAGGATGCTTGTGTATGAGTATGTCAACAATGGGAATCTTGAAAGTTGGTTACATGGAGAGTTATCCCAATATAGTTCTCTCACTTGGCTAGCGCGCATGAAAATTCTTTTGGGTACTGCAAAGGCCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATCAAGGCCAGTAATATATTGATTGATGATGAGTTTAACGCCAAAATATCTGACTTTGGTTTGGCCAAGATGCTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGCTATGTTGCGCCCGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGGTGGTTCTGCTGGAAGCTATTACAGGTAGAGATCCCATTGACTATGATCGCCCTCCAGATGAGGTAAACCTAGTTGACTGGCTTAAAATGATGGTTGCCAACAGACGATCAGAAGAAGTTGTTGATCCAAACCTGGAGAGAAGACCATCGACAAAGGAGCTCAAACGTGCCCTTTTGACAGCTCTGAGGTGCATCGATTTGAATTCTGAGAAGAGACCAAGGATGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAAACCGAGCCATTAAGAGGCAAGAGCAGCAGCGGCAAGAGTGATGCCCCTGAAAATGAGATGAGGCCACCTCGGTATAAGAATCGATCATTTCCCCCCAAGTGA
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| Protein seq | MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTIQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVEEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEDNSSSVPLHYVDNYDGIQSVSTCEQSSSHAPADSVPLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPPDEVNLVDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNSEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK |
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| Function | Probable receptor-like protein kinase At5g18500 [UniProtKB/Swiss-Prot:Q8LEB6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0108100 | OsNip_12t0108100-01 | Chr12 | 439128 | 443649 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCGTCAAACTCCACTCTAACAGACTCTCTTCATGAGAGAACAATTGTTTTTGGCCTGAAACTTTGGGTTGTAATTGGGATATCTGTTGGAGCATCCCTACTTGGTGTTCTTCTCATCCTTATTGTATGCCTCACCATACAAACTTGGATCAAACGGTCACGTAGGACATTCAAGGAAATTCCAATTACCCAAATACCTTCTGCATCCAAAGATATCAAGGAAGTGAGGGCAGTGGAGGAATTTTTGCCCAATGATTTCGTTGTACATGATGGACTTCTACTCGCCATTCAGAATGAACCTGTTGAACCAGTGGATAAAGATGTGAATCAGTTTGCTCAAGAGGACAAGACGATACAAGGAGAAGATAACAGTTCTTCTGTTCCTCTTCATTATGTGGACAACTATGATGGAATTCAATCTGTTTCCACATGTGAACAGTCTTCCTCGCATGCTCCCGCCGACTCTGTTCCCTTGCCAGGCTTACCTGAGTTCTCTTACCTTGGCTGGGGTCATTGGTTCACTCTCAGGGATCTGGAACTTGCAACCAACTGTTTTTCAAAGGATAATGTAATTGGTGAGGGTGGGTATGGTGTTGTCTACCGTGGCAGATTATCAAATGGCACCCCAGTGGCTGTCAAAAAAATCCTTAACAATCTAGGACAAGCTGAGAGAGAATTCAGAGTGGAAGTTGAAGCAATTGGTCATGTCCGACACAAGAATTTGGTTCGCCTTTTGGGGTACTGTGTTGAAGGCACTCAAAGGATGCTTGTGTATGAGTATGTCAACAATGGGAATCTTGAAAGTTGGTTACATGGAGAGTTATCCCAATATAGTTCTCTCACTTGGCTAGCGCGCATGAAAATTCTTTTGGGTACTGCAAAGGCCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATCAAGGCCAGTAATATATTGATTGATGATGAGTTTAACGCCAAAATATCTGACTTTGGTTTGGCCAAGATGCTAGGTGCTGGTAAAAGTCATATTGCTACTCGAGTTATGGGTACTTTTGGCTATGTTGCGCCCGAGTATGCTAACAGTGGACTTTTGAATGAAAAGAGTGATGTCTACAGTTTTGGGGTGGTTCTGCTGGAAGCTATTACAGGTAGAGATCCCATTGACTATGATCGCCCTCCAGATGAGGTAAACCTAGTTGACTGGCTTAAAATGATGGTTGCCAACAGACGATCAGAAGAAGTTGTTGATCCAAACCTGGAGAGAAGACCATCGACAAAGGAGCTCAAACGTGCCCTTTTGACAGCTCTGAGGTGCATCGATTTGAATTCTGAGAAGAGACCAAGGATGGACCAGGTGGTCCGGATGTTGGACTCTAATGAACCCATTCCTCAAGAGGAAAGAAGACAACGACAGAACCACATCTCTAATAATTCAGAAACCGAGCCATTAAGAGGCAAGAGCAGCAGCGGCAAGAGTGATGCCCCTGAAAATGAGATGAGGCCACCTCGGTATAAGAATCGATCATTTCCCCCCAAGTGA
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| Protein seq | MSSNSTLTDSLHERTIVFGLKLWVVIGISVGASLLGVLLILIVCLTIQTWIKRSRRTFKEIPITQIPSASKDIKEVRAVEEFLPNDFVVHDGLLLAIQNEPVEPVDKDVNQFAQEDKTIQGEDNSSSVPLHYVDNYDGIQSVSTCEQSSSHAPADSVPLPGLPEFSYLGWGHWFTLRDLELATNCFSKDNVIGEGGYGVVYRGRLSNGTPVAVKKILNNLGQAEREFRVEVEAIGHVRHKNLVRLLGYCVEGTQRMLVYEYVNNGNLESWLHGELSQYSSLTWLARMKILLGTAKALAYLHEAIEPKVVHRDIKASNILIDDEFNAKISDFGLAKMLGAGKSHIATRVMGTFGYVAPEYANSGLLNEKSDVYSFGVVLLEAITGRDPIDYDRPPDEVNLVDWLKMMVANRRSEEVVDPNLERRPSTKELKRALLTALRCIDLNSEKRPRMDQVVRMLDSNEPIPQEERRQRQNHISNNSETEPLRGKSSSGKSDAPENEMRPPRYKNRSFPPK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.330976 | 0.000000 | 4.774576 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0108800 | RBH | 0.350593 | 0.050381 | 3.953881 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01740 | RBH | 0.208586 | 0.000000 | 1.145398 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0108100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000460 | RBH | 0.0 | 19.690197 | 14.684648 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000650 | RBH | 0.149702 | 3.956070 | 1.437336 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000620 | RBH | 0.335421 | 17.653379 | 12.408351 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000480 | RBH | 0.000000 | 0.469527 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000620 | SBH | 1.288495 | 18.901426 | 32.477024 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0007800 | SBH | 7.4161405 | 6.0050445 | 6.1673355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000610 | SBH | 0.035184 | 1.311804 | 2.076789 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0008700 | SBH | 7.0437075 | 2.0801915 | 10.838152 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000470 | RBH | 0.031986 | 0.255393 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000630 | SBH | 0.205175 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000630 | SBH | 0.0 | 42.885612 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000590 | RBH | 0.426746 | 0.0 | 1.834819 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000650 | SBH | 0.242192 | 12.298848 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000630 | SBH | 0.030900 | 3.054033 | 6.395711 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000620 | SBH | 0.163879 | 24.996567 | 16.157648 |
