Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0701400 | OGI:11083460 | 4/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:28735986-28737061 | ||||||||
| Gene Symbol | C10150 | ||||||||||
| DNA seq | ATAGCCACTCATCACTGGCTCACCGCAATTAAACGCCATCTCGATCGAAAGCTAGACTAACCAAGTATATATACGATCGATGGCGTTCCGGCGCCGTTCATGCATCCCGGCGGCTCTGGCCGTCTTCTTCCTGCTGCTCGCCGGCCAGTCAACCGCCGGCGAAGACCAGACCGCCGTAATCTGGGGCCGCCACGGCGACGAGGGCACCCTCCGTGAGGCCTGCGACACCGGCCACTACAACACCGTCATCATCTCCTTCCTCAGCGTCTTCGGCCACGGCCGCTACTCCCTCGACCTCTCCGGCCACGACCTCCGCCGCGTCGGCAACGACATCAAGCACTGCCAGCGCAAGGGCATCGTCGTGCTCCTCTCCATCGGCGGCCAGGGCGGCGACTATTCCCTCCCCTCCTCCCGCTCCGCCGCCGACGTCGCCGACAACCTCTGGAACGCGTTCCTCGCCGGCCGCCGCAAGGGCGTGCTCCGGCCATTCGGCAACGCGGCGGTCGACGGCATCGACTTCTTCATCGACCGGGGCTCCGGCGACCACTACGACGAGCTGGCCAGGAAGCTCTACAGCTACAGAAACAACAAGGGGAAGGGGGTGATGCTGACGGCGACGCCGCGGTGCAGGTTCCCGGACCGGCGGCTGGAGAAGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCACGTGAGGATGTTCGGCGACGACGTGAACTGCACGGCGGCGCCGAGGGAGTCGTGGGAGAAGTGGGCGGCGGCGTACCCGGCGAGCCAGGTGTACCTCGGGCTGGTGGCCTCGTCGGAGCAGGACCCGGGATACCTGTCGCCCAAGCCACTCTACTACACGCTGGTGATGTACATCAGAGACAGGCTCAACTACGGTGGCAAGATGATCTGGGACAGGTACTACGACAAGAAGACCGACTACTCCATTGGAAAACTTATTTAAAACCTATATATATACTCCTTTTTCCATTGGGAGCATGGAGATATATATATATATATATATATATACCAAGTATTGAATAGGGCTTAATTTCTAGCTATATGGAATAATGTAATCCCATGTCGCAATT
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| CDS seq | ATGGCGTTCCGGCGCCGTTCATGCATCCCGGCGGCTCTGGCCGTCTTCTTCCTGCTGCTCGCCGGCCAGTCAACCGCCGGCGAAGACCAGACCGCCGTAATCTGGGGCCGCCACGGCGACGAGGGCACCCTCCGTGAGGCCTGCGACACCGGCCACTACAACACCGTCATCATCTCCTTCCTCAGCGTCTTCGGCCACGGCCGCTACTCCCTCGACCTCTCCGGCCACGACCTCCGCCGCGTCGGCAACGACATCAAGCACTGCCAGCGCAAGGGCATCGTCGTGCTCCTCTCCATCGGCGGCCAGGGCGGCGACTATTCCCTCCCCTCCTCCCGCTCCGCCGCCGACGTCGCCGACAACCTCTGGAACGCGTTCCTCGCCGGCCGCCGCAAGGGCGTGCTCCGGCCATTCGGCAACGCGGCGGTCGACGGCATCGACTTCTTCATCGACCGGGGCTCCGGCGACCACTACGACGAGCTGGCCAGGAAGCTCTACAGCTACAGAAACAACAAGGGGAAGGGGGTGATGCTGACGGCGACGCCGCGGTGCAGGTTCCCGGACCGGCGGCTGGAGAAGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCACGTGAGGATGTTCGGCGACGACGTGAACTGCACGGCGGCGCCGAGGGAGTCGTGGGAGAAGTGGGCGGCGGCGTACCCGGCGAGCCAGGTGTACCTCGGGCTGGTGGCCTCGTCGGAGCAGGACCCGGGATACCTGTCGCCCAAGCCACTCTACTACACGCTGGTGATGTACATCAGAGACAGGCTCAACTACGGTGGCAAGATGATCTGGGACAGGTACTACGACAAGAAGACCGACTACTCCATTGGAAAACTTATTTAA
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| Protein seq | MAFRRRSCIPAALAVFFLLLAGQSTAGEDQTAVIWGRHGDEGTLREACDTGHYNTVIISFLSVFGHGRYSLDLSGHDLRRVGNDIKHCQRKGIVVLLSIGGQGGDYSLPSSRSAADVADNLWNAFLAGRRKGVLRPFGNAAVDGIDFFIDRGSGDHYDELARKLYSYRNNKGKGVMLTATPRCRFPDRRLEKALATGVFARIHVRMFGDDVNCTAAPRESWEKWAAAYPASQVYLGLVASSEQDPGYLSPKPLYYTLVMYIRDRLNYGGKMIWDRYYDKKTDYSIGKLI |
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| Function | Xylanase inhibitor protein 2 [UniProtKB/Swiss-Prot:Q53NL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0701400 | OsNip_11t0701400-01 | Chr11 | 28735986 | 28737061 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGTTCCGGCGCCGTTCATGCATCCCGGCGGCTCTGGCCGTCTTCTTCCTGCTGCTCGCCGGCCAGTCAACCGCCGGCGAAGACCAGACCGCCGTAATCTGGGGCCGCCACGGCGACGAGGGCACCCTCCGTGAGGCCTGCGACACCGGCCACTACAACACCGTCATCATCTCCTTCCTCAGCGTCTTCGGCCACGGCCGCTACTCCCTCGACCTCTCCGGCCACGACCTCCGCCGCGTCGGCAACGACATCAAGCACTGCCAGCGCAAGGGCATCGTCGTGCTCCTCTCCATCGGCGGCCAGGGCGGCGACTATTCCCTCCCCTCCTCCCGCTCCGCCGCCGACGTCGCCGACAACCTCTGGAACGCGTTCCTCGCCGGCCGCCGCAAGGGCGTGCTCCGGCCATTCGGCAACGCGGCGGTCGACGGCATCGACTTCTTCATCGACCGGGGCTCCGGCGACCACTACGACGAGCTGGCCAGGAAGCTCTACAGCTACAGAAACAACAAGGGGAAGGGGGTGATGCTGACGGCGACGCCGCGGTGCAGGTTCCCGGACCGGCGGCTGGAGAAGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCACGTGAGGATGTTCGGCGACGACGTGAACTGCACGGCGGCGCCGAGGGAGTCGTGGGAGAAGTGGGCGGCGGCGTACCCGGCGAGCCAGGTGTACCTCGGGCTGGTGGCCTCGTCGGAGCAGGACCCGGGATACCTGTCGCCCAAGCCACTCTACTACACGCTGGTGATGTACATCAGAGACAGGCTCAACTACGGTGGCAAGATGATCTGGGACAGGTACTACGACAAGAAGACCGACTACTCCATTGGAAAACTTATTTAA
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| Protein seq | MAFRRRSCIPAALAVFFLLLAGQSTAGEDQTAVIWGRHGDEGTLREACDTGHYNTVIISFLSVFGHGRYSLDLSGHDLRRVGNDIKHCQRKGIVVLLSIGGQGGDYSLPSSRSAADVADNLWNAFLAGRRKGVLRPFGNAAVDGIDFFIDRGSGDHYDELARKLYSYRNNKGKGVMLTATPRCRFPDRRLEKALATGVFARIHVRMFGDDVNCTAAPRESWEKWAAAYPASQVYLGLVASSEQDPGYLSPKPLYYTLVMYIRDRLNYGGKMIWDRYYDKKTDYSIGKLI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.109138 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0701100 | SBH | 0.0 | 0.0 | 1.183175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g47550 | RBH | 0.0 | 0.0 | 0.260792 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0701400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024780 | SBH | 0.0 | 6.974366 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024770 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0024260 | SBH | 0.0 | 1.597823 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0024310 | RBH | 0.0 | 0.054235 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024590 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0449000 | RBH | 0.0276595 | 0.005267 | 0.086218 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0025130 | SBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0445000 | RBH | 0.0277605 | 0.4106805 | 0.009795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024920 | SBH | 0.0 | 0.418178 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0025010 | RBH | 0.075749 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024400 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024110 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024500 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024490 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024700 | RBH | 0.0 | 0.000000 | 0.0 |
