Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0685600 | OGI:11081610 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:27735451-27737645 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCAAGGTCTACAATATTTGGAGACACTGAAAGTTGATGGAAATATAGATGGAGTTCCATCAGACATCATCCATTTGCCAGGCTTGCTGCATCTTAGTCTTCCTGCTAAGACAAACCTGCCCAGTGGAATCGTCCACATGACATCGCTTCGAACACTTGGATATTTTGATCTCAGCTGTAACTCAGCAGAGAATCTACTGAGCCTGGCTGAGCTGACCAATCTCCGGGATGTACAGCTCACCTATTCTGCTGCACATTCTGATGATCTGAAGAATAATATGCAATGCCTTGGATCCATTTTGGAGAAACTCAGCAACCTCAAGTCTATAACTCTGGCACAACCAGGCTCCTCTTATGCAAATACTCTGCACGTTGATAGTGCTACAAACATGAGGATATCTGTTGCTGGCTGGAGCATCCTGTCCTCTCCACCGGCCCTTCTTCAGAGGATTGAGTTGTTACCGTGTGTTTGCGTTTTTTCTAGTATCCCGAATTGGATTGGGAAGCATGGAAATCTCCGCATTTTAAAGATTGGGATTAGAGAAATAACAAGTAATGATGTTGATGTTCTCGGAGGATTACCCGCACTCACTGTTTTGTCACTGTATGTCCATACAAAACCTATAGAAATGATTATCTTTGACAAGGAAGGATTCTCAATCCTGAAATACTTCAAGTTTAGATGCAGCGTAGCGTGGATGAAATTTGAGGCCGGTGCAATGCCTAATCTTCAGAAGCTCAGGCTAGGTTTTGATGTTCATCGAGCAGATCAACACGATACTATTCCAGTCAGAATCGAACATCTGTCTGGAGTTGAAGAGATCTATGCAAAAATAAGGGTCACCTCTACTGCTGATGATCTTTGTAGAAGATTTGCAGAGTCAGCATTGACTAACGCCGTTACGATGCATCAAGGAAGTCCTAGTGTCAATATATGGTGTGTAGATTGGATCTTCGATGGTAAGGATGATAACATTGCCAAGAAACGAGAGGTAGAACATAGGATTTTGCAACAACAACCACATATTGTGAAAGAAGGCTCAAATGAGAAATCCGCATTTCTACAAAAGAACCTCGGGGAGGGAGCACATAAATCTGTTGGCAGCAGGTATGTAATATAATCTGTCGCGCTAAAAATACTCTTGCCCTTGATACTACAATCAGTTTATTATGATCAATTCTAAATTATCAATTGACTCAAGCATAGCACTTCTTGACTAACTACTGGCACTACAACAAAAACCTCGTATAGAGACACTTTTGTAGAGGTGTTTTGCAAATTGCTTCTAAGATCAAAAGTTTTATAGTGTAGATACACTTTATAGAGGCACTTTAAAAATTGCCTAGAAAACTTTTACTCTATAGACATTTTTAGCTTAGTTTGTTAGATTTTATCTTGTAGAGGCATTCTTTTGGCACTATAAAATGCGTCTAATATGTAAAGGCATTTTGTTGACACATTTTATACTATGTAGAGACACTTTTTGAATGATAATGTGTACTAAAGGACTAAATATAAGTAACTAATGGAACAAACATACAAGTAATGATATGGAGTTAAGTTGGTTAGTGCATTGAAGATTAAAATGATTTAACCAAGAGATCGTGAGTTTCAAGGCTTGTCAAAAGCAAGGAAACTATTTTATTCTCTTTTTTGGACTGGTTTTATATATTTGCGGTACAATTTAATGTCTCTAGAAAATGCCTCTACCATATTATAAACATTTTATAAAATGTCTCTTCGTTTGTAGAGACAATTCACTATAAATATTTGCGGTACAATTTAATGTCTCTAGAAAATACCTCTATCATATTATAGACATTTTATAAAATGTCTCTTCGTTTGTAGAGACAATTCACCATAAGACACTTATTAGATATTTTTTTAAATGCCTCTACATTGTTGTACATGCATTTGAAAAGTGCCTCTACATTACTAGAAAAATGTCTCTACAAAGTATTTTTCTTGTGGTGTGGCAGACCCAACAAAAATTTCACTAGGTGTATGTGCCCACAAACAACAAGAACAAATACAAATAAAGTTTAAATTCAATAAACCCAACTTGATCTAAGCTTACAAATCACAAAGCATTGCCTCCTATCTTACTTCACTCCATTAATTTCTCTTTACAGTGAACATTCACGGACACTAATATTGGACAAGACAACAAATCAGATATCTGACCTGAGTTAA
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| CDS seq | ATGCAAGGTCTACAATATTTGGAGACACTGAAAGTTGATGGAAATATAGATGGAGTTCCATCAGACATCATCCATTTGCCAGGCTTGCTGCATCTTAGTCTTCCTGCTAAGACAAACCTGCCCAGTGGAATCGTCCACATGACATCGCTTCGAACACTTGGATATTTTGATCTCAGCTGTAACTCAGCAGAGAATCTACTGAGCCTGGCTGAGCTGACCAATCTCCGGGATGTACAGCTCACCTATTCTGCTGCACATTCTGATGATCTGAAGAATAATATGCAATGCCTTGGATCCATTTTGGAGAAACTCAGCAACCTCAAGTCTATAACTCTGGCACAACCAGGCTCCTCTTATGCAAATACTCTGCACGTTGATAGTGCTACAAACATGAGGATATCTGTTGCTGGCTGGAGCATCCTGTCCTCTCCACCGGCCCTTCTTCAGAGGATTGAGTTGTTACCGTGTGTTTGCGTTTTTTCTAGTATCCCGAATTGGATTGGGAAGCATGGAAATCTCCGCATTTTAAAGATTGGGATTAGAGAAATAACAAGTAATGATGTTGATGTTCTCGGAGGATTACCCGCACTCACTGTTTTGTCACTGTATGTCCATACAAAACCTATAGAAATGATTATCTTTGACAAGGAAGGATTCTCAATCCTGAAATACTTCAAGTTTAGATGCAGCGTAGCGTGGATGAAATTTGAGGCCGGTGCAATGCCTAATCTTCAGAAGCTCAGGCTAGGTTTTGATGTTCATCGAGCAGATCAACACGATACTATTCCAGTCAGAATCGAACATCTGTCTGGAGTTGAAGAGATCTATGCAAAAATAAGGGTCACCTCTACTGCTGATGATCTTTGTAGAAGATTTGCAGAGTCAGCATTGACTAACGCCGTTACGATGCATCAAGGAAGTCCTAGTGTCAATATATGGTGTGTAGATTGGATCTTCGATGGTAAGGATGATAACATTGCCAAGAAACGAGAGGTAGAACATAGGATTTTGCAACAACAACCACATATTGTGAAAGAAGGCTCAAATGAGAAATCCGCATTTCTACAAAAGAACCTCGGGGAGGGAGCACATAAATCTGTTGGCAGCAGTGAACATTCACGGACACTAATATTGGACAAGACAACAAATCAGATATCTGACCTGAGTTAA
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| Protein seq | MQGLQYLETLKVDGNIDGVPSDIIHLPGLLHLSLPAKTNLPSGIVHMTSLRTLGYFDLSCNSAENLLSLAELTNLRDVQLTYSAAHSDDLKNNMQCLGSILEKLSNLKSITLAQPGSSYANTLHVDSATNMRISVAGWSILSSPPALLQRIELLPCVCVFSSIPNWIGKHGNLRILKIGIREITSNDVDVLGGLPALTVLSLYVHTKPIEMIIFDKEGFSILKYFKFRCSVAWMKFEAGAMPNLQKLRLGFDVHRADQHDTIPVRIEHLSGVEEIYAKIRVTSTADDLCRRFAESALTNAVTMHQGSPSVNIWCVDWIFDGKDDNIAKKREVEHRILQQQPHIVKEGSNEKSAFLQKNLGEGAHKSVGSSEHSRTLILDKTTNQISDLS |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0685600 | OsNip_11t0685600-00 | Chr11 | 27735451 | 27737645 | + | RAP2018-11-26 | ||
| CDS seq | ATGCAAGGTCTACAATATTTGGAGACACTGAAAGTTGATGGAAATATAGATGGAGTTCCATCAGACATCATCCATTTGCCAGGCTTGCTGCATCTTAGTCTTCCTGCTAAGACAAACCTGCCCAGTGGAATCGTCCACATGACATCGCTTCGAACACTTGGATATTTTGATCTCAGCTGTAACTCAGCAGAGAATCTACTGAGCCTGGCTGAGCTGACCAATCTCCGGGATGTACAGCTCACCTATTCTGCTGCACATTCTGATGATCTGAAGAATAATATGCAATGCCTTGGATCCATTTTGGAGAAACTCAGCAACCTCAAGTCTATAACTCTGGCACAACCAGGCTCCTCTTATGCAAATACTCTGCACGTTGATAGTGCTACAAACATGAGGATATCTGTTGCTGGCTGGAGCATCCTGTCCTCTCCACCGGCCCTTCTTCAGAGGATTGAGTTGTTACCGTGTGTTTGCGTTTTTTCTAGTATCCCGAATTGGATTGGGAAGCATGGAAATCTCCGCATTTTAAAGATTGGGATTAGAGAAATAACAAGTAATGATGTTGATGTTCTCGGAGGATTACCCGCACTCACTGTTTTGTCACTGTATGTCCATACAAAACCTATAGAAATGATTATCTTTGACAAGGAAGGATTCTCAATCCTGAAATACTTCAAGTTTAGATGCAGCGTAGCGTGGATGAAATTTGAGGCCGGTGCAATGCCTAATCTTCAGAAGCTCAGGCTAGGTTTTGATGTTCATCGAGCAGATCAACACGATACTATTCCAGTCAGAATCGAACATCTGTCTGGAGTTGAAGAGATCTATGCAAAAATAAGGGTCACCTCTACTGCTGATGATCTTTGTAGAAGATTTGCAGAGTCAGCATTGACTAACGCCGTTACGATGCATCAAGGAAGTCCTAGTGTCAATATATGGTGTGTAGATTGGATCTTCGATGGTAAGGATGATAACATTGCCAAGAAACGAGAGGTAGAACATAGGATTTTGCAACAACAACCACATATTGTGAAAGAAGGCTCAAATGAGAAATCCGCATTTCTACAAAAGAACCTCGGGGAGGGAGCACATAAATCTGTTGGCAGCAGTGAACATTCACGGACACTAATATTGGACAAGACAACAAATCAGATATCTGACCTGAGTTAA
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| Protein seq | MQGLQYLETLKVDGNIDGVPSDIIHLPGLLHLSLPAKTNLPSGIVHMTSLRTLGYFDLSCNSAENLLSLAELTNLRDVQLTYSAAHSDDLKNNMQCLGSILEKLSNLKSITLAQPGSSYANTLHVDSATNMRISVAGWSILSSPPALLQRIELLPCVCVFSSIPNWIGKHGNLRILKIGIREITSNDVDVLGGLPALTVLSLYVHTKPIEMIIFDKEGFSILKYFKFRCSVAWMKFEAGAMPNLQKLRLGFDVHRADQHDTIPVRIEHLSGVEEIYAKIRVTSTADDLCRRFAESALTNAVTMHQGSPSVNIWCVDWIFDGKDDNIAKKREVEHRILQQQPHIVKEGSNEKSAFLQKNLGEGAHKSVGSSEHSRTLILDKTTNQISDLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.159657 | 5.993262 | 7.849560 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0686400 | SBH | 0.830266 | 0.567043 | 0.670688 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45840 | RBH | 5.631825 | 5.050056 | 1.784015 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0685600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024350 | SBH | 0.0 | 0.0 | 0.381606 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024210 | SBH | 0.198599 | 2.936731 | 2.884382 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023820 | SBH | 0.0 | 2.615624 | 1.016197 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023710 | SBH | 0.023583 | 0.155662 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0024160 | SBH | 2.927123 | 1.054704 | 2.802874 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0438400 | SBH | 0.0861995 | 0.1629875 | 0.368956 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024500 | SBH | 0.0 | 0.0 | 0.116773 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0438200 | SBH | 1.6151365 | 18.0614225 | 0.111228 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024380 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024390 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023740 | SBH | 2.832259 | 19.498186 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023730 | SBH | 0.332499 | 0.0 | 1.178051 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0024030 | SBH | 0.085596 | 5.207169 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G024040 | SBH | 0.255130 | 2.098425 | 0.721376 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024340 | SBH | 0.776946 | 32.235313 | 3.978990 |
