Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0597700 | OGI:11066590 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:22799341-22802116 | ||||||||
| Gene Symbol | Pb1 | ||||||||||
| DNA seq | ACCCCAGCGAGTTAGCCTTCCCCCGCGAGGCAGCAAGACCAATAATTGAAGCCATCAGTTGGGGGCCATTTACAAGGCAGGTGGCAAGTGAAATACATCTCAAGATTTGGATGGAGAGCTATCACCAGAAGACTAGAAGCTCAAGATTTGGATGGAGGGCTGGCACCAGAAGAATAGAAGCTTGATGGAAACCTTGGTCATCTGGAGAGTTTTGGGCTTCAGCAGTCACTTCTTTCTGCTGGCTTGATCACGTTTGTGTTGAGGATAGCTTTGCTGGGTCACTTCTGGACATAGGTCCTGTTTGATCGTAATTTCGGTTTCGGTCTTTTTTTTGTCCTTTGTTTAGTTTCAGCTTGGGCTTTCATTCCCTAGTTAAAAAAAAAAAGGGGGGCCATGACTGAGCTCGCGTCTGGCGCCGTGAGCTCACTGCTGGCGATCATCCGCAACGAGGCGGCTCTTCTCGGTGGCGTCCGGGACGACGTGCAGTTCATCAAGGAGGAGATGAAGAGCATGAACAGCTTTTTGGCGCACTTGGCGAAGAGCGCTCCGCAGGGTGGAGAGCACGACGAGTTGCGGGGAGGCAAACCTGATAAGAATCAAGCAACATGTGAACCTGATGTTCCACCTGATAAGAATCAAGCAACAGGTGAACATGCAGGTGTAATGGATCACAATGGAGAGGCTTATTTTACAGAAATAGAGCAGAAGATTGACGAAATCAAGCAGGAATTTAAAAAACAGCTGAAAATCAAAGGGATTATGGACAAGATCAAACATCACTTGATCGAGTACAAGATCAAACATGACTTACCGAATGAGTGCCCCCTCATTATCCTAAAATTTGATGATATGATGGATGGATCCAGATGGGAGGAGTTCAACCTTGATTGGACAATGGGTTGCAGAAGGTTTGACACTCAAGGAAGATTGGTCCAGTTCTGTGCATCAGGCAAAGATTTGATGCCCTCATCCATCGGTATCTTGTTTGTCCTGTTGATATTGGTGGCACAGGAAAGGTGAAGAGCTGTGTGGTAAATGATCCAGTTCATGGGTTCATTACCACAATTGCCAGAAAACAACATATTGTGGAGACACGCCTATCACATCATTTGGCTCGCCACTTCTCCATTTTCAATGATCTTCGACTCCGCAGCTCTGATGGAATTCACACATTCTTCCAAAGCCTCTCACGATCATCTCGAGTATCCCTACTAAAGGTGCTAGATCTAGAAGGTTCTCAGTGCTTTGGTGTTAAGAACCAGCGGTACCTCAAGGACATCTGCAGCAAGATGTTACTGCTCAAGTATCTGAGCCTAAAGAAAACAGAAATTACCCAACTGCCCAGTGAAATCAACTGCCTCCGTGAGCTAGAGGTATTGGATATCCGAGAAACTAAGGTGCCTGCAAATGCAACGGTTAATGTTCTGCTCTTGAAGCTAAAGCGTCTACTTGCTGGTCACATTGATTCAAGTCCAAGAAATTCTGGCACTAGCGTTCAGATTCCTCACAGGATAGACAAGATGGTAAACATAGAGGTACTATCTAATGTCAAGGCCCAACGCCGTGATGATTTGGAAGATACTGGAAAGCTATGGCAGCTAAGGAAGCTAGGTGTGGTTGTTGATGATAAGAGAGGTCACCTTGGGAATTTGCTTAAAGCAATCAGCAACCTACATGAGTGCATCCGTTCTCTGACAATCACTATTTCCACAACCACACACAAGGATACTCCTTCAAACCCAGAGTTACCAGATCATATTGGCTCTGACCTTCCCCATCCCAAGAAACTTGAGAGTCTAAGCATCAGTGGAGCCAGGCATCTTTTTCCATTGTTGATCAAAAGTGATAATAACAAGCTTGCCAAGGTAACTCTAAGTAGCACACCACTGAACCAAGATGATCTGGAGGTCCTCGCCAAGCTACCCAAGTTACAGTGTGTTAGGCTCCAACACATTTCATGCATAGTGAGTGAGCTCATCTTCAAGGAAGAAAATTTCAAATGTCTCAAGTACCTACTTATTGAGGGCTTTAACTTGACTAATATCACTTTTGAGGATGGATCAGCCTGTGAGCTCGAGAAAATGGTTTTATCTTCCACCAGCATAGAGTCTGTCTCTGGAGTTGATGTGCTTCCGAAATTCAAAGAGCTTGAGTTGAACAACAGCCATGTCCCGAATGAGTTGAAAGAAGCCGTTGAAAACAATAAAAGGATAATTCTTAAATGTAATGAACCATGAACTCAAGACCAGGCAAAACGGAGATGAACAAGAGGATGAAGACAATGCTGCAACATCCCCATTCTGCTGGAAGAAACAGGTTTGTCGCCAGCGGAGCATATCTCCTTTGATCCCATGGTGTGGTTTGTGTGTGCTAGTGTGGATTGCCATCTGCTGCTTGTCTGTTTATTTCTTTCTGCTGTGCGTGAGCGTGTCTTTATGTTCTGCATGATGTAATAATTCTTGTTGTACCCTGTTTTTTTCTTCCTTACTCTGTTTTGGTCTATTTCCTAGTTCGAGTCAGTGTAAGCTCAAGTCTTGATTGTTCAAGCCGGAGCAAGTCCTTAGCTAGTTGGCACAACATGCACTGGCGTGTGGGATGACACACGATTCAGCGAGCAAGTTAGCTGTGTCATTGGTGCGGCACGCCCTGACGTGCGGGATGGCGCACGAAGTGGACGGGCGTGGCGTACGTAGTGGCTTGAAGGCCACAATTTCATTTGCGTCTTGTCTATTTAAGTTTCAATATAATCGAGAAAATGCTGCCACTTGACAGCACC
More
|
||||||||||
| CDS seq | ATGACTGAGCTCGCGTCTGGCGCCGTGAGCTCACTGCTGGCGATCATCCGCAACGAGGCGGCTCTTCTCGGTGGCGTCCGGGACGACGTGCAGTTCATCAAGGAGGAGATGAAGAGCATGAACAGCTTTTTGGCGCACTTGGCGAAGAGCGCTCCGCAGGGTGGAGAGCACGACGAGTTGCGGGGAGGCAAACCTGATAAGAATCAAGCAACATGTGAACCTGATGTTCCACCTGATAAGAATCAAGCAACAGGTGAACATGCAGGTGTAATGGATCACAATGGAGAGGCTTATTTTACAGAAATAGAGCAGAAGATTGACGAAATCAAGCAGGAATTTAAAAAACAGCTGAAAATCAAAGGGATTATGGACAAGATCAAACATCACTTGATCGAGTACAAGATCAAACATGACTTACCGAATGAGTGCCCCCTCATTATCCTAAAATTTGATGATATGATGGATGGATCCAGATGGGAGGAGTTCAACCTTGATTGGACAATGGGTTGCAGAAGGTTTGACACTCAAGGAAGATTGGTCCAGTTCTGTGCATCAGGCAAAGATTTGATGCCCTCATCCATCGGTATCTTGTTTGTCCTGTTGATATTGGTGGCACAGGAAAGGTGA
More
|
||||||||||
| Protein seq | MTELASGAVSSLLAIIRNEAALLGGVRDDVQFIKEEMKSMNSFLAHLAKSAPQGGEHDELRGGKPDKNQATCEPDVPPDKNQATGEHAGVMDHNGEAYFTEIEQKIDEIKQEFKKQLKIKGIMDKIKHHLIEYKIKHDLPNECPLIILKFDDMMDGSRWEEFNLDWTMGCRRFDTQGRLVQFCASGKDLMPSSIGILFVLLILVAQER |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0597700 | OsNip_11t0597700-01 | Chr11 | 22799341 | 22802116 | + | RAP2018-11-26 | ||
| CDS seq | ATGACTGAGCTCGCGTCTGGCGCCGTGAGCTCACTGCTGGCGATCATCCGCAACGAGGCGGCTCTTCTCGGTGGCGTCCGGGACGACGTGCAGTTCATCAAGGAGGAGATGAAGAGCATGAACAGCTTTTTGGCGCACTTGGCGAAGAGCGCTCCGCAGGGTGGAGAGCACGACGAGTTGCGGGGAGGCAAACCTGATAAGAATCAAGCAACATGTGAACCTGATGTTCCACCTGATAAGAATCAAGCAACAGGTGAACATGCAGGTGTAATGGATCACAATGGAGAGGCTTATTTTACAGAAATAGAGCAGAAGATTGACGAAATCAAGCAGGAATTTAAAAAACAGCTGAAAATCAAAGGGATTATGGACAAGATCAAACATCACTTGATCGAGTACAAGATCAAACATGACTTACCGAATGAGTGCCCCCTCATTATCCTAAAATTTGATGATATGATGGATGGATCCAGATGGGAGGAGTTCAACCTTGATTGGACAATGGGTTGCAGAAGGTTTGACACTCAAGGAAGATTGGTCCAGTTCTGTGCATCAGGCAAAGATTTGATGCCCTCATCCATCGGTATCTTGTTTGTCCTGTTGATATTGGTGGCACAGGAAAGGTGA
More
|
|||||||
| Protein seq | MTELASGAVSSLLAIIRNEAALLGGVRDDVQFIKEEMKSMNSFLAHLAKSAPQGGEHDELRGGKPDKNQATCEPDVPPDKNQATGEHAGVMDHNGEAYFTEIEQKIDEIKQEFKKQLKIKGIMDKIKHHLIEYKIKHDLPNECPLIILKFDDMMDGSRWEEFNLDWTMGCRRFDTQGRLVQFCASGKDLMPSSIGILFVLLILVAQER
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.609521 | 0.449770 | 2.914788 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0598500 | RBH | 0.103114 | 0.129292 | 0.308141 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38520 | SBH | 0.533543 | 0.420615 | 0.358138 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0597700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019280 | SBH | 0.000000 | 2.018046 | 1.183530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019450 | RBH | 0.138931 | 0.0 | 1.933866 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019230 | SBH | 0.723412 | 0.0 | 0.240298 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018890 | SBH | 3.044133 | 0.046047 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019310 | RBH | 0.825974 | 1.371359 | 1.174815 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0351800 | SBH | 1.9343375 | 0.6439735 | 1.486446 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019790 | SBH | 0.000000 | 0.091162 | 0.194367 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0364300 | SBH | 2.353536 | 0.4016975 | 0.8838775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019520 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019760 | RBH | 0.089820 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019220 | RBH | 1.871113 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018970 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019080 | SBH | 0.521957 | 0.356360 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019180 | SBH | 0.0 | 0.0 | 0.060664 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019540 | SBH | 0.0 | 10.388853 | 0.0 |
