Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0479400 | OGI:11048960 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:16781662-16782881 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCTAAAGAGGGTTGGAGAGTTTTTATTCAGTAATGAGTACATTAATACATAGAACCTGAACAATATCTACCTGACAATTGTGATGTTCTGGTAACCACGAATGCGCAAGAAAAATATCAAATCGCAAAGAAAACAAAAAACTGCCCACATACCGTTTTCACTTTTTTTAGTGTTCAAGTACACCCCTAAGCAAAATCAATCTGGTTCACTGATCTCCCAGTTTAACAGAATCGCCTGCTATTTGTGGCCTTGAGTCGTCATCCATCTTTGCGGTCACCCAATCTTGGATCTTCAGCTAAAACTTCTGGATGTAAATTAGCCCCCTTCAAAATCCCCATGGCGTTTTCCACTTGTAATTGGCCCATATACTCATATGATCTTCTTACCATGTTACTGTGCACCTACTGAATTATCCAAGCAGTAGAAACAGTAAGCAACTAAACTAATGGTAAAACATACATGTCAACATTTTGAGAGAAAACTTCCATTTATTTGTTGACTAGACAGATTGGCTAAGATACCATAGCTATACTTTATAGTTATAAAAACTAGAACAAAAAATAAAAAAGAAATAAGAGAAACGACCTGAAACAACAGTATTAACACTTAACAGCGGCATCAACTTAGTTACCTCCAACTTGGGATGTGCTCGGGCTCGGCTCGATATTCGTCTCAGTGCTGTCGGAATCTCTTTTGTAGAAGACAAACCGTTTGTCGGTCTTGTCGTCTTCCGCATCTGTACAGGCATTCACTTGCTGGATGTGTTTGATCTTCTCCCACTCGGGGGTGCCTTTCCCCCGGGAGATCAGGGTGAGAAGATCCAAGTTGCAAGTGATCCGCAGATGACGTAGTTTTGCTGGAAGATCTCTAAGACAATCTGGGAGCCTTTCCATCTCTTGGTCATTCAACTCCATGCTCTGCAATGCTGGCAAACGCTGCAGAATATTCAGCTTTGGGCATCTGGAAACTGTCAGGCTTTCCATTTTTGGAAGATCACTGATCCTCTCTAGTTTGAAGTTGGAGGAGACGTGGAGCTGGACAACTGAACAGAAACCATCGATGGAGATGAGGTTCTTGACATTATCAACAACCAAAATTCTTAGAGACCTTGCCTGGGATGCAAGCCCAGGAGGAAGTTGATTCAGTAGGCACCAGCTGATATGCATGTTCTCTAGCTTGGGCATGGCCTCCACTTGATCTTCCCACTCCCATTCTTTCC
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| CDS seq | AAAGAATGGGAGTGGGAAGATCAAGTGGAGGCCATGCCCAAGCTAGAGAACATGCATATCAGCTGGTGCCTACTGAATCAACTTCCTCCTGGGCTTGCATCCCAGGCAAGGTCTCTAAGAATTTTGGTTGTTGATAATGTCAAGAACCTCATCTCCATCGATGGTTTCTGTTCAGTTGTCCAGCTCCACGTCTCCTCCAACTTCAAACTAGAGAGGATCAGTGATCTTCCAAAAATGGAAAGCCTGACAGTTTCCAGATGCCCAAAGCTGAATATTCTGCAGCGTTTGCCAGCATTGCAGAGCATGGAGTTGAATGACCAAGAGATGGAAAGGCTCCCAGATTGTCTTAGAGATCTTCCAGCAAAACTACGTCATCTGCGGATCACTTGCAACTTGGATCTTCTCACCCTGATCTCCCGGGGGAAAGGCACCCCCGAGTGGGAGAAGATCAAACACATCCAGCAAGTGAATGCCTGTACAGATGCGGAAGACGACAAGACCGACAAACGGTTTGTCTTCTACAAAAGAGATTCCGACAGCACTGAGACGAATATCGAGCCGAGCCCGAGCACATCCCAAGTTGGAGTAGGTGCACAGTAA
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| Protein seq | KEWEWEDQVEAMPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLERISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCNLDLLTLISRGKGTPEWEKIKHIQQVNACTDAEDDKTDKRFVFYKRDSDSTETNIEPSPSTSQVGVGAQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0479400 | OsNip_11t0479400-01 | Chr11 | 16781662 | 16782881 | - | RAP2018-11-26 | ||
| CDS seq | AAAGAATGGGAGTGGGAAGATCAAGTGGAGGCCATGCCCAAGCTAGAGAACATGCATATCAGCTGGTGCCTACTGAATCAACTTCCTCCTGGGCTTGCATCCCAGGCAAGGTCTCTAAGAATTTTGGTTGTTGATAATGTCAAGAACCTCATCTCCATCGATGGTTTCTGTTCAGTTGTCCAGCTCCACGTCTCCTCCAACTTCAAACTAGAGAGGATCAGTGATCTTCCAAAAATGGAAAGCCTGACAGTTTCCAGATGCCCAAAGCTGAATATTCTGCAGCGTTTGCCAGCATTGCAGAGCATGGAGTTGAATGACCAAGAGATGGAAAGGCTCCCAGATTGTCTTAGAGATCTTCCAGCAAAACTACGTCATCTGCGGATCACTTGCAACTTGGATCTTCTCACCCTGATCTCCCGGGGGAAAGGCACCCCCGAGTGGGAGAAGATCAAACACATCCAGCAAGTGAATGCCTGTACAGATGCGGAAGACGACAAGACCGACAAACGGTTTGTCTTCTACAAAAGAGATTCCGACAGCACTGAGACGAATATCGAGCCGAGCCCGAGCACATCCCAAGTTGGAGTAGGTGCACAGTAA
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| Protein seq | KEWEWEDQVEAMPKLENMHISWCLLNQLPPGLASQARSLRILVVDNVKNLISIDGFCSVVQLHVSSNFKLERISDLPKMESLTVSRCPKLNILQRLPALQSMELNDQEMERLPDCLRDLPAKLRHLRITCNLDLLTLISRGKGTPEWEKIKHIQQVNACTDAEDDKTDKRFVFYKRDSDSTETNIEPSPSTSQVGVGAQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0479400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013880 | RBH | 0.0 | 2.489008 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013830 | SBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013800 | RBH | 0.0 | 3.598019 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013600 | RBH | 0.0 | 0.054187 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013900 | RBH | 0.0 | 1.472746 | 0.214046 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0257900 | SBH | 0.150704 | 0.449259 | 0.1034185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013860 | RBH | 0.0 | 0.022895 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0272200 | RBH | 0.093866 | 0.141268 | 0.040867 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023750 | SBH | 0.067782 | 1.569802 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0024510 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0024220 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013810 | SBH | 0.036884 | 0.468708 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013640 | SBH | 0.083516 | 0.550149 | 0.257133 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013860 | RBH | 0.0 | 0.000000 | 0.251012 |
