Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0460700 | OGI:11045720 | 12/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:15671519-15676421 | ||||||||
| Gene Symbol | PPR | ||||||||||
| DNA seq | CAATGTGAGGAAAAAATTAGGCACGTGTAATAGGAGGGAGAGAGAGAGAGTATGCAAGCAGCAGCGCAAGCAATACATGCAGGGCAGGCAAGCAACGCAGCACGGGAGTGCGGGAGAGAGCATTGACCAACAAATGAAACATTAAGTTATATATGGTGAAACAAAGAATACAACAACTGAAACATTTAAATATTTTTATGACACATGGTGAAGATACACGTTGAAACATGTCACTGTCACATATGAAACAACAAGTATTGACGGATTGAAACATATGTGTTTCTTTTATTAAAATATAATCATGCGATATCTTGTTGTAGAGATTTAATTACAATGAATACAACGGTGTGATCGGATCATAGATTAAATAAGTAATTTAAAAGAAAATTCATTTTAAAGCTTGCTAAAATACATACATGTTGCATGCATGAGGTGGAGAGAGAGTAGTAGCAGATAGTTTCAGGAATTTTGTGAAACACACCGAAGACACATATTGAAACATATCATTATCACGTATGAAATATTTTATTCTAACGGTTTGAAACATATGTTTTTTTTTGACATAATATAATCATGTGATATCTTATTGTAAAGATTTAATTGCAACGAATACAACGGTGTGATCGGATCGTAGATCGGATAAGTAATTTAAGAGGAAAAAATATTTAAAAAGAGGATGAAAGAATGAAAAGAAACAGCTAGGCACATACATTACAGTGACATGGTTCGTTCCCACATGCGCTCGTTTAGACGTCCGATTTTTGGTGTGATGCCGGACGTCCGAGCCGTAGCGCTCTTCCGCTGATAGCGGGGTATGCCAAAATAGGATGCTCCGGGAAGGCACTGGAAGCATTTCACTCGATGCTGGATGACAGGATCAAGCCGGACGAGTTCACCATGGCAGGGGTGCTCTCTGCCTGCGCACAGCTCGGTTCGCTAGAGCAAGCAAGAAAGGTACATAGTTTCATCATCCAGCACCGTATCCGGAAGAACCACTTCGTTCTGAATGGCCTGGTTGACATGTTCGCCAAGTGCGATGACCTCGCTTTCGCACGAAAGATCTTCGACAACATGCAATGGAGGAATACCGAATGCTGGAACTTGATGATCTCTGCACTTTCCACCCATGGATAGAGCATAGAGGCTATTAAATTGTTCTCCAAGATGGAGTGTTCGGACCAGAAGCCTAATGCGATCACACTTCTCGCTGTGCTTGGAGCTTGCACGCATGGAGGATTTGTAGATGAAGGACTAAGAATCTTCAACAAGTTCGATGTTTACGGGGTTGCTGCTGCAGTGGAGCATTCTGGTTGCCTGGTTGACCTCCTGGCCTGTGCTGGAAGATTGAGAGAAGCTTATGAGATTGTCAAGAACATGCTTGTTCAACCAAACGAGGTGATCTGGTGCTCCTTACTCGGAGCTTGCAGGGTGCATGGCGATGCAGAGATGTCTGAACTCGTATCAAGTGAGATTCACCAATTGCACTCCTGTCGTGTGTCAACCAACGATGCAGAGTACATACTGCTGTCAAATATCATGGCCTCATCGGAGAGATGGGAGCAGGCTGAACGCATGAGGAGAAAGATGGCGCTCCATGGAGTTGGGAAGACTCCAGGGTGCAGTTCAGTTGAGCTCGATGTTCCCGAACAACAAGTACGCGCAGGCAGTGGTACGTTATCCCAATTACATTAACTGCATTTTTTGGTTGTCTCATGTGCTGGATTTTCTATTAACAATACTTCTGGTACATAGGTGATTAGCCAAGGACATTAGATGAATCAGACAAGGAAATTTTGTGTTTTGCTGCATCCCTTTATCAACTGTTGCTGGGCTTCTGGCATAGAAATAACCATACGCTTCATGTTAATTTTATATGCTAATATCAATCAGCAGGCACAACTGAATTCTGTATTTGAACATCGATTATTGTGGCTGAAATGTTAAAAAAGAAATCTTCACAAATGATACCAGAAAACATTTTCGCCAAATTTCCTAGATCAAAGGCGCCATAAAGGAGTTGGGAAGACTCCAGCAGGGTGCAGTTCAGTTGATCTTGACATTCCTGAACACCAAGTACACCCAGGCAGTGGTACGTTATCCCAACTACATTAACTGCATTTTTGCTCGTCTCCAATGTTCTAGCGAAGCGGTTTAACAAATTAGCCAGAAAAGAAAAGCCCCTCATGTTCTGCATTTTCTATTAACTAGTATGCTCCTTGTACATTAGATGATTAGACAAGGGAATTTTGTAATCTGCTGCATCCGTTTATCAACTGGATACGATGCTGACAACTGTGCAATTCCCTCTATAAAAAACGGTTCATGTCAGTTTTATATATACTAATGTCAGTGTGCAGGCACAACTGAATTCTGTATTTTAACATCAATTTTTGCGGTTTAAATGTTAAAAGAAACCAAACTATGTTCACTAGTGATACCAGAACATACTTCTGTACAGGTGCATGTGGCGCCCCGCTGGGGCCTGAACACGCATGCCGCCAAGATCCCCTTTCTCGGAGACACCCCGGGCTTGTGAGCCCATGAGCAATGGGAGGCGCCGCCGCGCACCTCCGTCCTGGAAGGAGCGGACCGCGGACGCGCTCGCACCGGTGTCGGACTGGCTCGAGTCTACCTCCCCCGAACCACCGCGCCCACTTCCTTCCGCAACTGCAGTCGCCCGCGGTGCGTTTGCGTAGCCGCCGACAACCTTCGCTTGAGTAGAGGACATGGCATCCACCGTCCTCTCGTTCACGGAGTTTTCTCTTCGGGCGCGCGACCACCCCACGCACCAATGAGAGGTATGCACTCCCGACCTACACTTTTACCTTTTTTACATCAAGCGCTGCCTCCTGATATGTTTGGATGTTGGAACTCATGCTTCTTTTCTGGAGATGTAATCATGCAAAGTAGTACTTACATTTGAAGATTTTTGTCCTCCCTTTTTTGCCTCGTTTGTTCTTCCTTTTGGTCGTAGCAATTAGTACAAGTTACTGTGTGCTTCGATTTCTTCAATTTTTTTCAGGTTCTACTACATTGGGGATCTGAAGCCCCAGGCTCAGCAGTTCATCTTACTGAACTTCTTTTTTAATAAAAAGGTGGTATGTGTACATGAATCTTGCCCATTTTTTTCCTAAGAAAGTATTGTCCATTTTTTTTTTCTGAAAATTGGTTCATGTGCATGCACTTACGGCAAGAGCAAGGATGAATAAATCCTTGTTTTTTTTTGTCCTAAAGCGCTGCAAGGATGCCTAGGAACAAATTTCAGATTTTTTTGGTTGGCTGGATGCACTTGAATTGAAATTTTCTGTTTAATGATTTCCCCCCATCTCGTTTGGATGCGCCAATTTACTCTCTATCATTCCTGATTTTCTAGGCAATTTAGCCAGTATACAATGTAACTTTTGCTTCGCTCCGTCCATGTTCTTTTCTCTAGAACTAGACAACAAATTCTCACTGCTGCAATTTGCTCTTTTGCTGTCCCAACTCACGAGTCACGAAAAAAAAATGGTGTCTGTTGTGAGAATTTGAACACAACGTACTTCATTTTTTCATTACAGATTTTTTTTGTCTATGTGGATTCCATTTGCAAATCTTGTCCATCAATTGCCCAATAATCAAGGAAATATTGATTACATGCTATATTTTTGAACTGGCAGCTCTTATATTTCAAAACATGGGCTTGTTGATTTTGTAGGAATCATTGTGTATGCAGTGAGAGGACACCAGCTGCTGATTTGAGGTGCTGCTCACAGTCACTGGTTTCGAACATTGGGTAGAGTTCCCAAAAGAGTGGATGAGGTGAGCACTCAACAGGAACCATCAGGCAACAACCATCCTTCAGCTATGCAAGTATCTATCATTCCACCGCTATCTATCAGAATTTCCAGTTTGCTCATTTGTATATTGTAGTATTACAAACTATCTTTTGTTTTTATTGTGCAAGTATCCATTTTCATCATGTAGTGAGCATTATTTTTCAGATCCACAGACATTGAACAATATAATATCGTTCTTTCCTAATTAACTTATCAGTGAACATATCATGACAAAAATGTTCTTTTGCTTGAGCAAGTACTTAATAATGACTTCCCAAAATGTATTACATGTGAATGGTCAGCATGTTCACTTCTACTCCCTCCGTTTCACAATGTAAGTCATTATGGTATTTCCCACATTCATATTAATGTTAATGAATCTAGATAGATATATATGTTTAGATTCATTAACATCAATATGAATGTGGGAAATGTTAGAATGACTTACATTGTGAAATGGAGGGAGTATCATATTAGTTGTGATGCGTGTGCTAGTGAATTTGCTTTCTTATTATCTATTACTCCTTTTATTGGGATTTTTCATTCATGACACTACAATTTGTGCAATTTTATTGGTCTTATTCATTTTTTTTTGTTTTTTTCACTTTTCCTTCAGTTATAATACCTAGAAGCATTTTTTATTTTATTAACCGATGGATTTGCACCATATCTAATGCTTGTTTTCCCATGGATTGCACTGATTCAACAGACTACATGTTTTGCAGATAATACAGTAATTGCAAAGTCATGGCAGGCTTTCTTATGATACATCACCCTAAAATCAGAAAAAAGGTGATGGCCACTTTTACTAGCTTAGTGGGTCAAAAGTCAAAACAAGCTGAAGCTCCACCTCCACTGTATCCTAGTATGTTCATCAATACGGGCCAAAAAAATTATGCTTGTCTTGTGCCAAAAGTACTGGGATGTGCCCATCGAGGCTTTGCAAGTGTTTACGAGCTGTTCGAATTACTGTTAGGTGGGGTTTATTGGTAACCGGTATCTATGTAAAAGGTGCATTTAACAGTCCTGGTGGCTGATGTTATTTTAAGAACAAGAAACCTGACGTTTCAAGATGAATCTCTGAAATC
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| CDS seq | ACGTCCGATTTTTGGTGTGATGCCGGACGTCCGAGCCGTAGCGCTCTTCCGCTGATAGCGGGGTATGCCAAAATAGGATGCTCCGGGAAGGCACTGGAAGCATTTCACTCGATGCTGGATGACAGGATCAAGCCGGACGAGTTCACCATGGCAGGGGTGCTCTCTGCCTGCGCACAGCTCGGTTCGCTAGAGCAAGCAAGAAAGGTACATAGTTTCATCATCCAGCACCGTATCCGGAAGAACCACTTCGTTCTGAATGGCCTGGTTGACATGTTCGCCAAGTGCGATGACCTCGCTTTCGCACGAAAGATCTTCGACAACATGCAATGGAGGAATACCGAATGCTGGAACTTGATGATCTCTGCACTTTCCACCCATGGATAG |
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| Protein seq | TSDFWCDAGRPSRSALPLIAGYAKIGCSGKALEAFHSMLDDRIKPDEFTMAGVLSACAQLGSLEQARKVHSFIIQHRIRKNHFVLNGLVDMFAKCDDLAFARKIFDNMQWRNTECWNLMISALSTHG |
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| Function | Pentatricopeptide repeat-containing protein At3g21470 [UniProtKB/Swiss-Prot:Q9LVF9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0460700 | OsNip_11t0460700-01 | Chr11 | 15671519 | 15676421 | + | RAP2018-11-26 | ||
| CDS seq | ACGTCCGATTTTTGGTGTGATGCCGGACGTCCGAGCCGTAGCGCTCTTCCGCTGATAGCGGGGTATGCCAAAATAGGATGCTCCGGGAAGGCACTGGAAGCATTTCACTCGATGCTGGATGACAGGATCAAGCCGGACGAGTTCACCATGGCAGGGGTGCTCTCTGCCTGCGCACAGCTCGGTTCGCTAGAGCAAGCAAGAAAGGTACATAGTTTCATCATCCAGCACCGTATCCGGAAGAACCACTTCGTTCTGAATGGCCTGGTTGACATGTTCGCCAAGTGCGATGACCTCGCTTTCGCACGAAAGATCTTCGACAACATGCAATGGAGGAATACCGAATGCTGGAACTTGATGATCTCTGCACTTTCCACCCATGGATAG
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| Protein seq | TSDFWCDAGRPSRSALPLIAGYAKIGCSGKALEAFHSMLDDRIKPDEFTMAGVLSACAQLGSLEQARKVHSFIIQHRIRKNHFVLNGLVDMFAKCDDLAFARKIFDNMQWRNTECWNLMISALSTHG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.064993 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0880900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g24530 | SBH | 0.134810 | 0.357066 | 0.149714 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0460700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013320 | RBH | 0.0 | 1.192999 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000710 | SBH | 0.0 | 0.0 | 0.299376 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013250 | SBH | 0.0 | 0.0 | 0.110127 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013000 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013310 | RBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0629000 | SBH | 0.2532875 | 0.5208455 | 0.217957 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013980 | SBH | 0.239748 | 0.085167 | 0.254122 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0629500 | SBH | 0.2148355 | 0.4269905 | 1.7976155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023970 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023950 | SBH | 0.062940 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013080 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0012900 | RBH | 0.098465 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013260 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023500 | SBH | 0.072770 | 0.920478 | 0.460464 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013250 | RBH | 0.538830 | 2.240961 | 0.444963 |
