Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_11g0013260 OGI:11045720 | 12/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr11:17398100-17406594
Gene Symbol PPR
DNA seq

atgaccgccacgtgggcaccacactggtgtccggtgtactgcaagtgcggcctcctggccgacgcacgcggggtgttggacagaatgccggaccggaacaccgtgacgtgtaatgccatgctcaccgggtatacggcggcgggcgacatggccaacgcggaggcggtgtttgccggcatgggctcacggacgcccgtcacgtgggcgacgCtgatccgggggTtcgcggaggcgcgcgacatggtggatgcgcggcggtggttcaaggccgcgccgcCgggcatgcggaacgtcgtcacgtggaccgtggctgtgcagggttacacggccacgGgggacatggagaCcgcgagggagCtgttagacaagatgCctgtgtggaacgcgttcgtgtggtcctcgatggtcactgggtacttcaaggctggcaatgccAacgaagcgcacgcggtgttcaacagaatacctgtgcgaaacttggtgaattggaacacgctgatagcggaaatgcttaCcatcggcagtCcggccagaaatAaaaaatcggacgtcttaatctaaaaaaaacaacagtgtaggtgcatggtgcaacggttggtcaggtgtactgacaagcaacggagcatgtaTacaaacatgtttcAaaatttaaatgaTtttttctcttaaactatttatccaaatttcaaattaaTtatatcattagattcgttataattaaatctttataacaagatatcacatgactacattccgacgacttttaattttgctttttaaaTgttgcacacattgttacattgttactaaaatgttctaacaaacatttgttgatgtttcactaattcattagcaatgtttcatgcatcttttttatatgtttcagcaaatatattttttatgtttcaacaataattataattcgatgtttcgatctaaatataaaaaatgtttcactagtcgggacttaatgttttatgtaataatgattattgttgtcgtcaaaacttttttatatattgtacttctttagaacaatttgtgaagtgggTtgaaacatctccacaagtgatgaaagaattatttttaaatagttcaactaattgtttttttctaggaaagcaatataatttttatcaaaatatattatgtgagatcttgtataaaattatagattggatatatattttagaataaaattttgtttaaagtttgattaagagagagaaagtaatggtgCctcaggccaccttggcaaccagctctactcctacatgcatgcatgTgacacatcgcttctcgaacgcgTccctgcatacagacgagacgaggagcagcattcgatatttgaaaaaatattgaatgtaagaTttgtagcgtcagatttAaaaatatttcaacataattaagtatttgtgtaaaaatctaatggtataattgaaatttagatcagatataggtgaaacaaagaaaacaacaactgaaacatttaaaTatttttatgaaacatgatgaagatacacgttgaaacatgtcgctgtcacataTgaaacaacaagtattgatggattgaaacatatgtgtttcttttattaaaatataatcatgcgatatcttgttgtaaagatttaattacaacgaatacaatggtgtgattggatcatagattaaataagtaaTttaaaagAaaattcattttaaagcttgctaaaatacatgcatgttgcatgcatgaggtggagagagagtagtagcaggtagtttcaggaattttgtgaaacacaCcgaagacacatattgaaacatatcactatcgcgtatgaaataTtttattctaacggtttgaaacatatgTtttttttgacataatataatcatgtgatatcttattgtaaagatttaattgcaacgaatacAacggtgtgatcggatcgtagatcggataagtaatttaggaggaaaaaataTttaaaaagaggatgaaagaatgaaaagaaacagctagacacatacattacagtgacatggttcgttctcacatgcgctcgtttagacgaccgatttttggtgtgatgCcggacgtccgagccatagcgctcttccgctgatagcggggtatgccaaaataggatgctCcgggaaggcactggaagcatttcactcgatgctggatgacaggatcaagccggacgagttcaccatggcaggggtgctctctgcctgcgcacagctcggttcgctagagcaagcaagaaaggtacatagtttcatcatccagcaccgtatccggaagaaccacttcgttctgaatggcctggTtgacatgttcgccaagtgcgatgaCctcgctttcgcacgaaagatcttcgacacacatgcaatggaggaataccgaatgctggaacttgatgatctctgcactttccacccatggatagagcatagaggctattaaaTtgttctccaagatggagtgttcggaccagaagcctaatgcgatcacacttctcgctgtgcttggagcttgcacgcatggaggatttgtagatgaaggactaagaatcttcaacaagttcgatgTttacggggttgctgctgcagtggagcattatggttgCctggttgacctcctggcctgtgctggaagattgagagaagcttatgagattgtcaagaacatgcttgttcaaccaaacgaggtgatctggtgctccttactcggagcttgcagggtgcatggcgatgcagagatgtctgaactcgtatcaagtgagattcaccaaTtgcactcctgtcgtgtgtcaaccaacgatgcagagtacatactgctatcaaatatcatggcctcatcggagagatgggagcaggctgaacgcatgaggagaaagatggcgctccatggagttgggAagactccagggtgcagttcagttgagctcgatgttcccgaacaacaagtacgcgcaggcagtggtacgttatcccaattacattaactgcaTtttttggttgtctcatgtGCtggattttctattaacaatacttctggtacataggtgattagccaaggacattagatgaatcagacaaggaaattttgtgttttgctgcatccctttatcaactgttgctgggctgctggcatagaaataaccatacgcttcatgttaattctatatgctaatatcaatcagcaggcacaactgaattctgtatttgaacatcgaTtattgtggctgaaatgttaaaaaaaaatcttcacaaatgataccagaaaacattttcgccaaatttcctagatcaaaggcgccatAaaggagttgggaagactccagcagggtgcagttcagttgatcttgacattcctgaacaccaagtacacccaggcagtggtacgttatcccaactacattaactgcaTttttgctcgtctccaatgttctagcgaagcagtttaacaaattagccagaaaagaaaagcccctcatgttctgcattttctattaactagtatgctccttgtacattagatgattagacaagggaattttgtaatctgctgcatccgtttatcaactggatacgatgctgacaactgtgcaaTtccctctataaaaaacggttcatgtcagttttatatAtactaatgtcagtgtgcaggcacaactgaattctgtattttaacatcaaTttttgcggtttaaatgttaaaagaaaCcaaaccatgctcactagtgataccagaacatacttctgtacaggtgcatgtggcgccccgctggggcctgaacacgcatgccgccaagatcccctttctcggagacaccccgggcttgtgagcccatgagcaatgggaggcgccgccgcgcaccTccgtcctggaaggagcggaccgcggacgcgctcgcaccggtgtcggaCtggctcgagtctacctCccccgaaccaccgcgcccacttccttccgcaactgcagtcgcccgcggtgcgtttgcgtagccgccgacaaCcttcgcttgagtagaggacatggcatccaccgtcctctcgttcacggagttttctcttcgggcgcgcgaccaccccacgcaccaatgagaggtatgcactcccgacctacacttttaccTtttttacatcaagcgctgcctcctgatatgTtggaactcatgcttcttttctggagatgtaatcatgcaaagtagtacttacatttgaagatttttgtcctcccttttttgcctcgtttgttctTCcTtttggtcgtagcaattagtacaagttactgtgtgcttcgatttcttcaaTttttttcaggttctactacattGgggatctgaagCcccaggctcagcagTtcatcttactgaacttcttttttaataaaaaggtagtatgtgtacatgaatctTGgccatttttttcctaagaaagtattgtccaTttttttttctgaaaattggttcatgtgcatgcacttacggcaagagcaaggatgAataaatccttgtttttttttgtcctaaagcgctgcaaggatgcctaggaacaaatttcagattttttTGgTtggctggatgcacttgaattgaaattttctgtttaatgatttccccccatctcgtttggatgcgccaatttactctgtatcattccttattttctaggcaatttagCcagtatacaatgtaacttttgcttcgctccgtccatgttcttttctctagaactagacaacaaattctcactgctgcaatttgctcttttgctgtcccaactcacgagtcacgaaaaaaaaatggtgtctgttgtgagaatttgaacacaaCgtacttcaTtttttcatTAcagaTtttttttgtctatgtggaTtccatttgcaaatcttgtccatcaatTGgccaataatcaaggaaataTtgattacatgctataTttttgaactggcagctcttatatttcaaaacatgggcttgttgaTtttgtaggaatcattgtgtatgcagtgagaggacacctgctgctgatttgaggtgctgctcacagtcactggTttcgaaCattGggtagagTtcccaaaagagtggaggaggtgagcactcaacaggaaccatcaggcaacaaccatccttcagctatgcaagtatctatcattccaccactatctatcagaatttccagtttgctcatttgtatattgtagtattacaaactatcttttgtttttAttgtgcaagtatccattttcatcatgtagtgagcattAtttttcagatccacagacattgaacaatataatatcgttctttcctaattaacttatcagtgAacatatcatgacAaaaatgttcttttgcttgagcaagtacttAataatgacttcccaaaatgtattacatgtgaatggtcagcatgttcacttctatccctctgtttcacaatatAagtcattctagcatttcccacattcatattgatgttaatgAatctaggAaatgctagaatgacttacattgtgaaatggaGggagtatcatattagttgtgatgcgtgtgctagtgaatttgctttcttattatctaTtattccttttattgggatttttcattcatgacactacAatttgtgcaattttattggtcttattcatttttttttGTttttttcacttttccttcagttataatacctagaagcattttttattttattaaccgatggatttgcaccatatctaatgcttgttttcccatggattgcactgattcaacagactacatgttttgcagataatacagtaattgcaaagtcatGgcaggctttcttatgatacatcaccctaaaatcagaaaaaaggtgatggccacttttactagcttagtgggtcaaaagtcaaaacaaGctgaagctccacctccactgtatcctagtatgttcatcaatacgggccaaaaaaattatgcttgtcttgtgccaaaagtactgggatgtgcccatcgaggctttgcaagtgtttacgagctgttcgaattactgttaggtggggtttattggtaaccggtatctatgtaaaaggtgcatttaacagtcctggtggctgatgttattttaagaacaagaaaCctgacgtttcaagatgaatctctgAaatcatgttcagttgtcAaatacgcaaatggatagctgaacgttaagaatatagtaaacttatgttgcagttcattcacaactcacttcaactttccaaggtcgagaagtgttcccccagactcgcccccagaaaatgatctttgtgaactaaataaaaactgagatgaagaaaaaatctctctattAatgatgctGttacAagctatcatgcaggaacaaataggagaatgtaacAcagaacgtgcatacaaagtgatattcttccattcacgacAaacttaggtacatagataatattcataatcagaaacacctggAaacacaaatttcttcctcgcagggtgcaaaccttttgcttggaggcttatgaggagagcatttccaacagcacAaaaccttcatcataGgatcaatgctatcaGctcatcatgtacgagatgTggccatgtgggcagcaagAagatgaaaaacattttattcttccgccgctactttagtaGgctgatttagtttaacttgaaaatagattgccttattttttttgagaagtacacatgatattttggcctgcttccaggtgttagatgcttcctGgaaggagaactacataactagaataggcatcttcatccatgattcAaaatcacacaatgcccttttttatcagagctcactcagtaatcctattcttatctcccttAatatatagctgaacctgcgtgtcttgtgatagcgattaaaagcactcaaaatctgaagatcgcagacccggtgcaatagtggtggaaactataaaaaTagactttcAaaacaacccAaccaggtcactcgtccttgaacTtgaagttcatatggatttaaagaaaataatagataaaatttaatttgggaccacaaactattcaaggcagtctgatctggactgggAaaaaaaaggaaaaatAaactcttatcatgcaaaatAaattaacagcaaatctccatatatcgtctcagtgaacagtgaacaaatcgagcccataggagaagtgagacagcgtgaaaagTtttcacctatgatagGTccagctaaacTtgaccttcctctgctcatccttgttagccctgtcctcagtcagtgtacttcgtgttttctgAaaattattAtcttgacatcatcatcatcatcatcattattattatccacattgcaactttgcgtattcttttttcattctgctaactctaggttttgagacttgagagtgataatggatcttgttgcaaggtagctttgTtttTCCGTAGATTATTCCCTTCGTGAATGCTACGGAACATCATCCCGCCATGCATCCCCATGCTGTATGCGTTACCGAATACCGATCTCCTTTGCAAGCCGTGACGTGTACATGCACGTATGCACATTGCGAGAATGATGACTTAGGAGTTACTAGTCGCCAACCCGAGTGTTTCACGGGGGTTATTTATCATCGTCATAAATACTAAAATTCTAATAATATGTTGGCCGTTTTATAAGTTATGGCAATTTGCATTAATAGAGGGTCTACATCAATTGCTACTCCTTATTTCAAAATGAAATTAACAAAATCAACTTCAATATTTTTAATTCTGGATTTAGAAAGTAATAGGTCTTGAGAAAAAAAACTAGAACCTAAAGAGCCCATGGTATATTGTTTATACTGAACAATTGGTTCGATTAACAGCTCTAAATTCAAAAATAGTAATTGTAAAATATGTAGCCCAATTATACTTTTTccatgattgaataaatgtgatgctcagaattaaaattaaagtatcgaaactctatttgtcagtaagtccaaacttattatttttagtaactaagtccaaactatgttttctaagtatcTtgtagattagttatttggattgatgtcgttttcttattgtcctgaacatgaattcaatgtgatgGatttaatctgtttatctaTttgctttcttgaacacttatctgttcttggtgctggggttaactgtagatggcctgaaaaatgtacatgtGggatcaaccaaccaagtgttcagtagtatttgaagcacattccatctaagAaccacaaattttgTttttcattttggactactaccttagtgcttaaccccacggaggTttggtcagaagaatgttggaaagttacctcAaccactaatctgaAttttactgatgtatatgcctcctggctccttatatcatatacttcactgttgtattccttacaggtcgtgaacccaaacgacgttattctcttctcaagatcagctcaatggaatcgaacatgaggtacctgTttatgtttcatgcacttcaGgttaattag

More
CDS seq

atgaccgccacgtgggcaccacactggtgtccggtgtactgcaagtgcggcctcctggccgacgcacgcggggtgttggacagaatgccggaccggaacaccgtgacgtgtaatgccatgctcaccgggtatacggcggcgggcgacatggccaacgcggaggcggtgtttgccggcatgggctcacggacgcccgtcacgtgggcgacgCtgatccgggggTtcgcggaggcgcgcgacatggtggatgcgcggcggtggttcaaggccgcgccgcCgggcatgcggaacgtcgtcacgtggaccgtggctgtgcagggttacacggccacgGgggacatggagaCcgcgagggagCtgttagacaagatgCctgtgtggaacgcgttcgtgtggtcctcgatggtcactgggtacttcaaggctggcaatgccAacgaagcgcacgcggtgttcaacagaatacctgtgcgaaacttggtgaattggaacacgctgatagcggaaatgcttaCcatcggcagatgctCcgggaaggcactggaagcatttcactcgatgctggatgacaggatcaagccggacgagttcaccatggcaggggtgctctctgcctgcgcacagctcggttcgctagagcaagcaagaaagagcatagaggctattaaaTtgttctccaagatggagtgttcggaccagaagcctaatgcgatcacacttctcgctgtgcttggagcttgcacgcatggaggatttgtagatgaaggactaagaatcttcaacaagttcgatgTttacggggttgctgctgcagtggagcattatggttgCctggttgacctcctggcctgtgctggaagattgagagaagcttatgagattgtcaagaacatgcttgttcaaccaaacgaggtgatctggtgctccttactcggagcttgcagggtgcatggcgatgcagagatgtctgaactcgtatcaagtgagattcaccaaTtgcactcctgtcgtgtgtcaaccaacgatgcagagtacatactgctatcaaatatcatggcctcatcggagagatgggagcaggctgaacgcatgaggagaaagatggcgctccatggagttgggAagactccagggtgcagttcagttgagctcgatgttcccgaacaacaagtacgcgcaggcagtgatcaaaggcgccatAaaggagttgggaagactccagcagggtgcagttcagttgatcttgacattcctgaacaccaagtacacccaggcagtgaaaCcaaaccatgctcactagtgataccagaacatacttctgtacaggtgcatgtggcgccccgctggggcctgaacacgcatgccgccaagatcccctttctcggagacaccccgggcttgttctactacattGgggatctgaagCcccaggctcagcagTtcatcttactgaacttcttttttaataaaaaggtagtatgtcgtgaacccaaacgacgttattctcttctcaagatcagctcaatggaatcgaacatgaggtacctgTttatgtttcatgcacttcaGgttaattag

More
Protein seq

MTATWAPHWCPVYCKCGLLADARGVLDRMPDRNTVTCNAMLTGYTAAGDMANAEAVFAGMGSRTPVTWATLIRGFAEARDMVDARRWFKAAPPGMRNVVTWTVAVQGYTATGDMETARELLDKMPVWNAFVWSSMVTGYFKAGNANEAHAVFNRIPVRNLVNWNTLIAEMLTIGRCSGKALEAFHSMLDDRIKPDEFTMAGVLSACAQLGSLEQARKSIEAIKLFSKMECSDQKPNAITLLAVLGACTHGGFVDEGLRIFNKFDVYGVAAAVEHYGCLVDLLACAGRLREAYEIVKNMLVQPNEVIWCSLLGACRVHGDAEMSELVSSEIHQLHSCRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELDVPEQQVRAGSDQRRHKGVGKTPAGCSSVDLDIPEHQVHPGSETKPCSLVIPEHTSVQVHVAPRWGLNTHAAKIPFLGDTPGLFYYIGDLKPQAQQFILLNFFFNKKVVCREPKRRYSLLKISSMESNMRYLFMFHALQVN

Function Pentatricopeptide repeat-containing protein At3g21470 [UniProtKB/Swiss-Prot:Q9LVF9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_11g0013260 OsLaMu_11g0013260.01 Chr11 17398100 17406594 + NAM
CDS seq

atgaccgccacgtgggcaccacactggtgtccggtgtactgcaagtgcggcctcctggccgacgcacgcggggtgttggacagaatgccggaccggaacaccgtgacgtgtaatgccatgctcaccgggtatacggcggcgggcgacatggccaacgcggaggcggtgtttgccggcatgggctcacggacgcccgtcacgtgggcgacgCtgatccgggggTtcgcggaggcgcgcgacatggtggatgcgcggcggtggttcaaggccgcgccgcCgggcatgcggaacgtcgtcacgtggaccgtggctgtgcagggttacacggccacgGgggacatggagaCcgcgagggagCtgttagacaagatgCctgtgtggaacgcgttcgtgtggtcctcgatggtcactgggtacttcaaggctggcaatgccAacgaagcgcacgcggtgttcaacagaatacctgtgcgaaacttggtgaattggaacacgctgatagcggaaatgcttaCcatcggcagatgctCcgggaaggcactggaagcatttcactcgatgctggatgacaggatcaagccggacgagttcaccatggcaggggtgctctctgcctgcgcacagctcggttcgctagagcaagcaagaaagagcatagaggctattaaaTtgttctccaagatggagtgttcggaccagaagcctaatgcgatcacacttctcgctgtgcttggagcttgcacgcatggaggatttgtagatgaaggactaagaatcttcaacaagttcgatgTttacggggttgctgctgcagtggagcattatggttgCctggttgacctcctggcctgtgctggaagattgagagaagcttatgagattgtcaagaacatgcttgttcaaccaaacgaggtgatctggtgctccttactcggagcttgcagggtgcatggcgatgcagagatgtctgaactcgtatcaagtgagattcaccaaTtgcactcctgtcgtgtgtcaaccaacgatgcagagtacatactgctatcaaatatcatggcctcatcggagagatgggagcaggctgaacgcatgaggagaaagatggcgctccatggagttgggAagactccagggtgcagttcagttgagctcgatgttcccgaacaacaagtacgcgcaggcagtgatcaaaggcgccatAaaggagttgggaagactccagcagggtgcagttcagttgatcttgacattcctgaacaccaagtacacccaggcagtgaaaCcaaaccatgctcactagtgataccagaacatacttctgtacaggtgcatgtggcgccccgctggggcctgaacacgcatgccgccaagatcccctttctcggagacaccccgggcttgttctactacattGgggatctgaagCcccaggctcagcagTtcatcttactgaacttcttttttaataaaaaggtagtatgtcgtgaacccaaacgacgttattctcttctcaagatcagctcaatggaatcgaacatgaggtacctgTttatgtttcatgcacttcaGgttaattag

More
Protein seq

MTATWAPHWCPVYCKCGLLADARGVLDRMPDRNTVTCNAMLTGYTAAGDMANAEAVFAGMGSRTPVTWATLIRGFAEARDMVDARRWFKAAPPGMRNVVTWTVAVQGYTATGDMETARELLDKMPVWNAFVWSSMVTGYFKAGNANEAHAVFNRIPVRNLVNWNTLIAEMLTIGRCSGKALEAFHSMLDDRIKPDEFTMAGVLSACAQLGSLEQARKSIEAIKLFSKMECSDQKPNAITLLAVLGACTHGGFVDEGLRIFNKFDVYGVAAAVEHYGCLVDLLACAGRLREAYEIVKNMLVQPNEVIWCSLLGACRVHGDAEMSELVSSEIHQLHSCRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVELDVPEQQVRAGSDQRRHKGVGKTPAGCSSVDLDIPEHQVHPGSETKPCSLVIPEHTSVQVHVAPRWGLNTHAAKIPFLGDTPGLFYYIGDLKPQAQQFILLNFFFNKKVVCREPKRRYSLLKISSMESNMRYLFMFHALQVN

More
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0460700 RBH 0.0 0.0 0.064993
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g27240 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0460700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0013320 RBH 0.0 1.192999 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0004130 SBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0013250 RBH 0.0 0.0 0.110127
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0013000 RBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0013310 RBH 0.0 0.000000 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0241800 SBH 0.8087055 0.7053085 3.5501595
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0004050 SBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0274400 SBH 0.566938 1.1747145 2.47925
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0013360 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0013450 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0013080 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0012900 RBH 0.098465 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G012160 SBH 0.059410 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0013250 RBH 0.538830 2.240961 0.444963
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.