Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0300600 | OGI:11032050 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:11212708-11214426 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATTATCTTAATTTTTTTTTCCAATCTGTATCGAATTTGTAGATGAGGAACCTACTGCTGCTGCCGCTGCTCGTGGCGGTGGCGGCGACGGTGCCCTTGGCGGCGGCGCTGTCGGCCGACGGGGTGGCGCTGCTGGCGTTCAAGACGGCGGTGACCGACGACCCGTCGGGGGCGCTGTCGTCGTGGTCGGACGCCGACGACGACCCGTGCCGGTGGGCCGGCGTGACGTGCGCCAACACGTCGTCGTCGGGGCCACGCGTCGTCGGCGTCGCCGTCGCCGGGAAGAACCTGTCCGGGTACGTGCCGTCCGTGCTCGGCTCGCTCGCGCTCCTCCGCCGCCTCAACCTGCACGGCAACCGCCTCTCCGGCACCGTCCCACCGGCGCTGGCGAACGCCACCTCGCTCCACTCGCTCTTCCTCTACGGCAACAGCCTCACCGGCGGCCTCCCGCCGGAGCTCTGCGACCTGCCGCGCCTGCAGAACCTTGACCTGTCGGATAACTCGCTCACCGGCAGCCTCCCGCCGGAGCTCCGGCGGTGCAAGCAGCTGCAGCGGCTGATGCTCTCCGGGAACGGATTCTCCGGCGAGATACCGGCCGGCGTCTGGCCGGAGATGGTGAGTTTGCAGCTGCTCGACCTGTCGGATAACTCGCTCACCGGCGCCATCCCGCCGGAGCTCGGGAAGCTGGCCGCGCTCGCCGGCACGCTGAATCTCTCGCGGAACCACCTCTCCGGCGGGGTGCCACCGGAGCTCGGGCATCTCCCGGCGACCGTCACCCTCGACCTCCGCTTCAACAACCTCTCCGGCGAGATCCCGCAGTCCGGGTCGCTCGCCAGCCAGGGCCCCACCGCCTTCCTCAACAACCCGGGCCTCTGCGGCTTCCCGCTCCAGGTCCCCTGCCGCGCGGCGCCGCCGTCGTCGTCCACCCCGCCGCCGCCGTCCGCCGCCGGCTCCATCAGCGGCGCCGGCGGGCCGCGCCAGCCGGTCAAGACCAGCCTCATCGTGCTCATCTCGGTCGCCGACGCCGCCGGAGTAGCGCTCATCGGCGTCATCGTGGTCTACATCTACTGGAAGCTCCGCGACCGCCGCGGCGACGGCTGCGGCGGCGACGGCGACGACGACGAGGAAAGGAAGCGAGGCCTCTTCCCCTTCCCGTGCATGCGCGCCGACGACTCGTCGGACGACGGGTCGGACGCCGGCGACGACGTCAAGCGCAACAACACCACCACCACCACCACCGCCAGCGGCGGCGGCGGCGGCGGCGAGGAGGGGCAGCTGGTGGCGATCGACAAGGGGTTCAAGATGGAGCTGGACGAGCTGCTGCGTTCGTCGGCGTACGTGCTGGGGAAGGGCGGGAAGGGGATCGTGTACAAGGTGGTGGTCGGCAACGGCACGACGCCGGTGGCCGTGCGGCGGCTGGGCGGCGGCGCGGCGGCGGCGGAGAGGTACAAGGAGTTCGCGGCGGAGGCGGGGGCCATCGGCCGCGTCCGCCACCCCAACGTGGTGCGCCTGCGCGCCTACTACTGGTCCGCCGACGAGAAGCTCGTCGTCACCGACTTCGTCAACAACGGCAACCTCGCCACGGCGCTGCGGGGTGAGCACACACCTTCCCCTTCCCCTTCCCCTTCACAATTCGTGAATTTGTTTGGAAAGCGGGAAACGTATTTTCTCAAAAAATGGAGCAAACTTTGGCTGGATTATAACAAACTTTGGTAAAAC
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| CDS seq | ATGAGGAACCTACTGCTGCTGCCGCTGCTCGTGGCGGTGGCGGCGACGGTGCCCTTGGCGGCGGCGCTGTCGGCCGACGGGGTGGCGCTGCTGGCGTTCAAGACGGCGGTGACCGACGACCCGTCGGGGGCGCTGTCGTCGTGGTCGGACGCCGACGACGACCCGTGCCGGTGGGCCGGCGTGACGTGCGCCAACACGTCGTCGTCGGGGCCACGCGTCGTCGGCGTCGCCGTCGCCGGGAAGAACCTGTCCGGGTACGTGCCGTCCGTGCTCGGCTCGCTCGCGCTCCTCCGCCGCCTCAACCTGCACGGCAACCGCCTCTCCGGCACCGTCCCACCGGCGCTGGCGAACGCCACCTCGCTCCACTCGCTCTTCCTCTACGGCAACAGCCTCACCGGCGGCCTCCCGCCGGAGCTCTGCGACCTGCCGCGCCTGCAGAACCTTGACCTGTCGGATAACTCGCTCACCGGCAGCCTCCCGCCGGAGCTCCGGCGGTGCAAGCAGCTGCAGCGGCTGATGCTCTCCGGGAACGGATTCTCCGGCGAGATACCGGCCGGCGTCTGGCCGGAGATGGTGAGTTTGCAGCTGCTCGACCTGTCGGATAACTCGCTCACCGGCGCCATCCCGCCGGAGCTCGGGAAGCTGGCCGCGCTCGCCGGCACGCTGAATCTCTCGCGGAACCACCTCTCCGGCGGGGTGCCACCGGAGCTCGGGCATCTCCCGGCGACCGTCACCCTCGACCTCCGCTTCAACAACCTCTCCGGCGAGATCCCGCAGTCCGGGTCGCTCGCCAGCCAGGGCCCCACCGCCTTCCTCAACAACCCGGGCCTCTGCGGCTTCCCGCTCCAGGTCCCCTGCCGCGCGGCGCCGCCGTCGTCGTCCACCCCGCCGCCGCCGTCCGCCGCCGGCTCCATCAGCGGCGCCGGCGGGCCGCGCCAGCCGGTCAAGACCAGCCTCATCGTGCTCATCTCGGTCGCCGACGCCGCCGGAGTAGCGCTCATCGGCGTCATCGTGGTCTACATCTACTGGAAGCTCCGCGACCGCCGCGGCGACGGCTGCGGCGGCGACGGCGACGACGACGAGGAAAGGAAGCGAGGCCTCTTCCCCTTCCCGTGCATGCGCGCCGACGACTCGTCGGACGACGGGTCGGACGCCGGCGACGACGTCAAGCGCAACAACACCACCACCACCACCACCGCCAGCGGCGGCGGCGGCGGCGGCGAGGAGGGGCAGCTGGTGGCGATCGACAAGGGGTTCAAGATGGAGCTGGACGAGCTGCTGCGTTCGTCGGCGTACGTGCTGGGGAAGGGCGGGAAGGGGATCGTGTACAAGGTGGTGGTCGGCAACGGCACGACGCCGGTGGCCGTGCGGCGGCTGGGCGGCGGCGCGGCGGCGGCGGAGAGGTACAAGGAGTTCGCGGCGGAGGCGGGGGCCATCGGCCGCGTCCGCCACCCCAACGTGGTGCGCCTGCGCGCCTACTACTGGTCCGCCGACGAGAAGCTCGTCGTCACCGACTTCGTCAACAACGGCAACCTCGCCACGGCGCTGCGGGGTGAGCACACACCTTCCCCTTCCCCTTCCCCTTCACAATTCGTGAATTTGTTTGGAAAGCGGGAAACGTATTTTCTCAAAAAATGGAGCAAACTTTGGCTGGATTATAACAAACTTTGGTAA
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| Protein seq | MRNLLLLPLLVAVAATVPLAAALSADGVALLAFKTAVTDDPSGALSSWSDADDDPCRWAGVTCANTSSSGPRVVGVAVAGKNLSGYVPSVLGSLALLRRLNLHGNRLSGTVPPALANATSLHSLFLYGNSLTGGLPPELCDLPRLQNLDLSDNSLTGSLPPELRRCKQLQRLMLSGNGFSGEIPAGVWPEMVSLQLLDLSDNSLTGAIPPELGKLAALAGTLNLSRNHLSGGVPPELGHLPATVTLDLRFNNLSGEIPQSGSLASQGPTAFLNNPGLCGFPLQVPCRAAPPSSSTPPPPSAAGSISGAGGPRQPVKTSLIVLISVADAAGVALIGVIVVYIYWKLRDRRGDGCGGDGDDDEERKRGLFPFPCMRADDSSDDGSDAGDDVKRNNTTTTTTASGGGGGGEEGQLVAIDKGFKMELDELLRSSAYVLGKGGKGIVYKVVVGNGTTPVAVRRLGGGAAAAERYKEFAAEAGAIGRVRHPNVVRLRAYYWSADEKLVVTDFVNNGNLATALRGEHTPSPSPSPSQFVNLFGKRETYFLKKWSKLWLDYNKLW |
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| Function | Receptor protein kinase-like protein ZAR1 [UniProtKB/Swiss-Prot:Q9ZU46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0300600 | OsNip_11t0300600-01 | Chr11 | 11212708 | 11214426 | + | RAP2018-11-26 | ||
| CDS seq | ATGAGGAACCTACTGCTGCTGCCGCTGCTCGTGGCGGTGGCGGCGACGGTGCCCTTGGCGGCGGCGCTGTCGGCCGACGGGGTGGCGCTGCTGGCGTTCAAGACGGCGGTGACCGACGACCCGTCGGGGGCGCTGTCGTCGTGGTCGGACGCCGACGACGACCCGTGCCGGTGGGCCGGCGTGACGTGCGCCAACACGTCGTCGTCGGGGCCACGCGTCGTCGGCGTCGCCGTCGCCGGGAAGAACCTGTCCGGGTACGTGCCGTCCGTGCTCGGCTCGCTCGCGCTCCTCCGCCGCCTCAACCTGCACGGCAACCGCCTCTCCGGCACCGTCCCACCGGCGCTGGCGAACGCCACCTCGCTCCACTCGCTCTTCCTCTACGGCAACAGCCTCACCGGCGGCCTCCCGCCGGAGCTCTGCGACCTGCCGCGCCTGCAGAACCTTGACCTGTCGGATAACTCGCTCACCGGCAGCCTCCCGCCGGAGCTCCGGCGGTGCAAGCAGCTGCAGCGGCTGATGCTCTCCGGGAACGGATTCTCCGGCGAGATACCGGCCGGCGTCTGGCCGGAGATGGTGAGTTTGCAGCTGCTCGACCTGTCGGATAACTCGCTCACCGGCGCCATCCCGCCGGAGCTCGGGAAGCTGGCCGCGCTCGCCGGCACGCTGAATCTCTCGCGGAACCACCTCTCCGGCGGGGTGCCACCGGAGCTCGGGCATCTCCCGGCGACCGTCACCCTCGACCTCCGCTTCAACAACCTCTCCGGCGAGATCCCGCAGTCCGGGTCGCTCGCCAGCCAGGGCCCCACCGCCTTCCTCAACAACCCGGGCCTCTGCGGCTTCCCGCTCCAGGTCCCCTGCCGCGCGGCGCCGCCGTCGTCGTCCACCCCGCCGCCGCCGTCCGCCGCCGGCTCCATCAGCGGCGCCGGCGGGCCGCGCCAGCCGGTCAAGACCAGCCTCATCGTGCTCATCTCGGTCGCCGACGCCGCCGGAGTAGCGCTCATCGGCGTCATCGTGGTCTACATCTACTGGAAGCTCCGCGACCGCCGCGGCGACGGCTGCGGCGGCGACGGCGACGACGACGAGGAAAGGAAGCGAGGCCTCTTCCCCTTCCCGTGCATGCGCGCCGACGACTCGTCGGACGACGGGTCGGACGCCGGCGACGACGTCAAGCGCAACAACACCACCACCACCACCACCGCCAGCGGCGGCGGCGGCGGCGGCGAGGAGGGGCAGCTGGTGGCGATCGACAAGGGGTTCAAGATGGAGCTGGACGAGCTGCTGCGTTCGTCGGCGTACGTGCTGGGGAAGGGCGGGAAGGGGATCGTGTACAAGGTGGTGGTCGGCAACGGCACGACGCCGGTGGCCGTGCGGCGGCTGGGCGGCGGCGCGGCGGCGGCGGAGAGGTACAAGGAGTTCGCGGCGGAGGCGGGGGCCATCGGCCGCGTCCGCCACCCCAACGTGGTGCGCCTGCGCGCCTACTACTGGTCCGCCGACGAGAAGCTCGTCGTCACCGACTTCGTCAACAACGGCAACCTCGCCACGGCGCTGCGGGGTGAGCACACACCTTCCCCTTCCCCTTCCCCTTCACAATTCGTGAATTTGTTTGGAAAGCGGGAAACGTATTTTCTCAAAAAATGGAGCAAACTTTGGCTGGATTATAACAAACTTTGGTAA
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| Protein seq | MRNLLLLPLLVAVAATVPLAAALSADGVALLAFKTAVTDDPSGALSSWSDADDDPCRWAGVTCANTSSSGPRVVGVAVAGKNLSGYVPSVLGSLALLRRLNLHGNRLSGTVPPALANATSLHSLFLYGNSLTGGLPPELCDLPRLQNLDLSDNSLTGSLPPELRRCKQLQRLMLSGNGFSGEIPAGVWPEMVSLQLLDLSDNSLTGAIPPELGKLAALAGTLNLSRNHLSGGVPPELGHLPATVTLDLRFNNLSGEIPQSGSLASQGPTAFLNNPGLCGFPLQVPCRAAPPSSSTPPPPSAAGSISGAGGPRQPVKTSLIVLISVADAAGVALIGVIVVYIYWKLRDRRGDGCGGDGDDDEERKRGLFPFPCMRADDSSDDGSDAGDDVKRNNTTTTTTASGGGGGGEEGQLVAIDKGFKMELDELLRSSAYVLGKGGKGIVYKVVVGNGTTPVAVRRLGGGAAAAERYKEFAAEAGAIGRVRHPNVVRLRAYYWSADEKLVVTDFVNNGNLATALRGEHTPSPSPSPSQFVNLFGKRETYFLKKWSKLWLDYNKLW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.249428 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g19480 | RBH | 0.0 | 0.0 | 0.063984 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0300600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017830 | SBH | 0.128877 | 6.788608 | 1.696541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0011060 | SBH | 0.0 | 0.0 | 0.114150 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0011020 | SBH | 0.0 | 0.712032 | 0.501574 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0010770 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0011140 | SBH | 0.0 | 3.642296 | 0.428497 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0169500 | SBH | 1.7307075 | 3.2619065 | 0.2937285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0011040 | SBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0172700 | SBH | 2.150857 | 1.1140605 | 1.7474825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0011150 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0011310 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0010960 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0010750 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0011040 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G011080 | SBH | 0.0 | 0.000000 | 0.758036 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0011420 | RBH | 0.0 | 3.387162 | 4.892168 |
