Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0266500 | OGI:11026340 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:9144218-9150975 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTCGTCAGCCACTTCCGGTGTCCATCCAATTCCCCAGCAACCGCGGCGCCGATCGAGTTCTTGGGCTCCGGCGGCAGCCGGCCGGTGTTGGGCGCGCGACGGAGCCCCGGCCACCTGCAGCTAGCCGTACAGCCGCCGGCGGCCGGTGTATACAGGTATCTCTCTGGATTCTGTTTTTTTTTCTTTTTTTCTTTTTCTTTTGGATCGAATCGGCCCCATCGCTCGCTCCGAGAAGGCGGCGTTGATCCGCGCCAGCGCCACGGTTTCGAGGGGCTGTGTGTGCCCCCGATTTAGCGGAGGAGGGCACGGTGGTTTCGAGGGGTCCCGAGAAATTCGTGAGTTTTTCATCCTGCACTTCACTTTGTTTTCTTGCTTATCGCCGTGTTTGGTGTTGCTAATAGCAGTTATTACTTATTCTTATTACTATTACTATTATTATTATTACTCACTCCGTTTTATAATGTATGTGTTTAGATTTATTAGTATCTAAATTAATGTAGGCAATGTTAGAAAGTCTTACATTGTGAAACGGAGCAGGTATTATTTTTGGAGTAAATTTCAGAAATGGGACAAAGTTATGAAAAACCACGGGTATTAATGACGAGTGGCACATAACCACATATGACATATTTATGGTCTCATTGTTTTCTAAAACCCAACCTTTATTGGAATTTTGATAAATTCCAGCATATCTATGGTTTAGAACTTTAAGTAAATTCACGCTTAAAGTGCATAAGGGTGATATTTTGTGAAACTTTAAAATCATAATACCTGACAGCGGCGGAGCCAAGGCCCGGCCAGCACAGGCAGGCGCCTAGGCTCCGCCACATGCATCCATGCATTAGAGCTAAATATAGCGTTTAGCCATTAGCCTAGCTTCACATACACCATTAGATTAGCACTAATTATCATACTTGGTTATTAGCCAGCGGCCTAATTTCGCTTCTTATTCATGATAAAATGCTATATGTATTTTTGTTTACTTGTTAATTTGTTATCTATCGTTAGGTTTGCCCATGCCTAAAAAAAATTCTAGATCTGCCACTGATACCTGAGGTTGTGTCATGTTATAAAACCTGTGGTTATTTACAACTTCACCAAAAAACACAATGTTTTCTGAAATTTGTTCTTATTTTTATTATAAAGATGCATAGCCACCACTACGGGGTTTCCCAAACCACCGGGGCCGGGGTTACCGCGACCCAGCGGTAAGCACGGTTACCGCGCAGTAACCACGGTAACCGTGAAAAACCGTACAAAACCGTGCAAAATTTATCAAAAATTCAAATTATATTTTAAATTTATTTCAATTTAAGGAGGTTACCGTGGTATTTATATTACCGTACCCCGCGGTAAGCCCGGTAACCGTGGTAACCGCGCGGTTACAGTCGGTAAGTCGAACCCTGCCACTACCCACTGTTCTATATGCACACACCTGTAAGCAAGTCCACTTAATAAACACAAAGTGACGGATGTCAGAAGCAAATTTCCAACCTCACTATAAAATAGTATTAAAAGGGTACTTGTGTGCTTGCAATATTGTAGGTATAAGTATTGATCCCTGGTGTGTGAAGTCATGTATGAAATATTTTGTTATATGCCATTTTCGAAGATGGCATTCAGATGTGCAAGTGCACAAACAAACTATAGTTGTGGTATATTAACCTGTCAAGCTATTAGCTAAACTTGAGGGGAGGGACCTAATGTTTTTCTTTGAACCAAGTGATGGGACCTAACCTTTACAGCCTGTTTGGCAACAATTGGGAGGAGGAATGAGAGTTCAGTTAACCAGTAAAATACTCTCTGTGTATCTTACACTGGTTTTGGGCCAAAATAAAAAGAAAAGAAAAGAAAAGCTTCCAAGCAGGTCCTAGTATGTTTCCGACATTTTCTAGCTTATGTGAGCTAGAAAGTAGACATGTTCAAACGTTATTCTCCTTGTGATCTGAAACTTAAAGACTCTGTGTACTCAATCAAGTAGGATTATAGGAAGCTACTTAGTTTGCTTCACCTTGAGGTCTTGTGAAAATGTTGTTCATCATTTTCTTTTTGTTCACATACATGATGGATGTCCACTATTACTGTTTTCGCATTTTGGATTGAGTTAGCAATTATTCTGAATATTTTGCAAAAAACTCAACATGAATAGAATTCCCCTTACATGGTGAGTGATTAAACAGCTAGATGATGGTGGGAGCAACGGTTTCAGCTTCAGCGGGGGTGATGAACTCTCTGCTTGGGAAGCTCTCCACCTTGCTGGACAAAGAGTATACAAAGCACAAAAATGTGGAAAAGGATGTGATGTTCCTGCAAAGGGAGCTACCCAGCATGGAGGCTGTGCTGCAGAAACATGCAATGCAGGACGAGCTTGATGTTCAATTGAAGGCCTGGGTGAGTGAGTTGAGAGAGCTGGCATATGACATTGAGGACTCCATTGATGCTTTCATGGTGCGCATTGAGCACTATAGTGATGAGTCTGCTGGAATTAAGGGGTTTATGAGTAAGAAAATCCACAAGCTCAAGAAGCTCCGTTGTCACCATAAATTTTCGGCGGTGTTTCTTGAACTAAAAGAGCGTGTCGTTGAAGCAAACGAGCGGCGAAGAAGATATGAGGTTGATGGGTCCACATCTGGAACCACAACCAGTGATTGCTTGTTGATTCCCGGTTGCCAGCACTCTATTCTGGTTTAGATGAGCTTGTAGGAATCAAGGGTCCAAGGGATTGTATAATCAAGTTGCTAACTTATGAAGCTGATAGTGGCCCATCAAGACAGCAACTCAAAGTAGTGTCCATTGTGGGATGTGGAGGTCTGGGCAAGACAACACTTGCCAATCAAGTCTATAAGGAAATCAATGGCCAATTTGATTGTAAGGCTTTTGTGTCTATGTCCCAGAAACCAGACATGAGGAAGATCTTAATGGATCTACTATCTCAAATACTGGGGAATGGTAGCCCCATGTGCTTTGATGAACAGCGACTCATTGACAAGCTTCGGGAGTTCCTAAAAGATAAGAGGTATTAAAACTGAACTTTATTGTTTCATAATTGCAAGATAATAATAAAATTATTGAAAAAAAACTGCAATTTTTAAAAGTATCAGGTGTTAACATTCTGTAAAAAAGTCCAAGTCAAGACAAACAGAGAGAGATATTAAATGTGAACTATACACAATACACATATGTGTATACATCCCTTACATGGTAGAAGAGTCCTTAAAATCTTCATTTGTGCCTTAATCTTTGGACATGTCTGAGACATATTAGATCTGTCTGGTCTATGTAATTTCACCTTATCAATACTTAATTTTCCTTCTTTTTTAAATGACCTATTGGATTAGTGTTAACCATGCCATTTTGTAGTTTCGTATTTTTATACTCTTGTTTCTTCTTTCGATCTTTAAATTTTTTTTTCCGTAGATTCAACTGGATTGTAGTTTTTATTTATAAGCAAGTGACATTGTGACATGGGGATACTGTGAAATAGCTATTGACAATAAATCAAATATTAAAGTCCCTACAAGAGATGATAACAGGAAATTAGGAGTGAACTTTGAACAGTTTTTGAAAATGACTTGGTTTTGCGCCTTATCTAAAGCAATATGAAATATGGTTTTCAACGGAAACGTACACAGCTAGTTGTCATGTGCCATGGAATATTAGGTACAGAGCTTATTTGTATTCCAGTTAAGTATAGGCCCTATACTTTTAGAGTAAGGCGTCTAGTGAAAACGATGGCATCTGCGGAGTCATGTGAAGGAGATTGACTTGAGTTTTTAGCAATTACATTGTTAAGTTCACTATGACAGCCCGGCCAAAAAAAGTTCACTATGACCATTGTATTTGTTTTAAAGCTCCATGGAAGCCCCAATTGATGCAAAAGACAAGGCATTGTGTTCAGTTAGCTGTTTGGGAGGGCAATGTGTGCTTTATTTTGTGTAGAAGGACTGCTATATTTTTTTGTGTTGTCTGCATACTGCTTATTCCCAATTTCAAACAGATGCATCAATAACAATTTTGCGTCTTAAGTCACCTTAGAGAATTTGGTCAGGGCTTCCCCTCATATACAAGTTTCGGTAAACCTTGGGACATTTTGTATGCCATTCAGATATGTCATGAGAAAATCAGACCTACATAAAACAAGTACACACACAGATGCAGTATTATTTTAGTAAAAATATATACATGTAATAAAAACAGTTCTTATAAACTGTTCACAAATTTATGCAAATAGGTTGTGATGTTTATATCATAAGAATAATAATATAGTTTTTAATATTTCAGAAACACCATTGGCACCTTGTAACTGCTGATATATCTCTCAATTCTGCTAAGTTCTACCTAACGCTTGATAAAATGTCACCAAAATCTGTACAGGTACCTGATCGTTATTGATGATATTTGGAGCACATCAGCATGGGAGATTGTGAAGTCTGCATTTCCTGATAATAATCTTCGCAGCAGAATAATTACAACAACGCGCATCATGGATGTAGCTAAATCATGTTCTGCTAATCTCCAGGAATATGTTTACACCATCAAACCACTTAATCATCAAGACTCTAGCAAGCTGTTTGTTAAAAAAATTTTCCCTTCTGGGTGTGGTGTTCCTCAACATCTGAAAGAAGTTTCGAATGCAATACTGAAAAAATGTGGTGGTTTGCCACTGGCTATACTTATTATAGCTGGTTTGTTGGCTAGTAAGTATGATAGGAAGGATGAGTGGGAGGCAGTGCATAATTCTATTGGCTCTGAACTTGGCAAAAATCATACTTTGGAAGGATTCAGAAGGATTTTGATGCTTAGTTTTTATGACCTGCCTCATGATTTGAAAACCTGCTTCTTATATCTAAGTATATTCCCGGAGGATGACCTGATTGTAAGAAAACAATTGGTGTGGAAATGGGTTGCGGAAGGGTTTATTAGAAAAGTGCGTGGTAAAAGACCAGATCAAGTTGCAGAGAGCTACTTTTACGATCTTATCAATAGAAACATGATCCAAGCAGTGGGTGTTCAGTACAAAGGTAACATATATGGTTGTCGAGTTCATGATTTAGTGCTTGACCTTATCAGATCTCTATCAGCACAAATCAACTTTGTTATCGCGATTGATGATAAAGGGTATGAATCTTCTCCTAGGAAGATTCGTCGGCTGTCCTTGCAAGCTAGTAATTTGGAAGATCAAGAAATGCAGAAACTTGTGAGTAATCAATCCCATATCCGCTCACTCATTATGTTCAGGGCCTTTAAGAAAGCACCTGATCTTTTCAAGTTCCATGCTCTGCGTATTTTGGATTTATCCGAGTGCAATTGTTTGGAGGACCACCACATTACATGTATAGTGAATATGTTTCAGCTGAGGTATCTGAGCCTCCCTTGCAGAATCACTGAACTCCCCGAGCAAACCGGGAACTTGCAACATCTAGAGGTACTGAACATCAGGCGTTGCATGATCAAAACATTGCCAGAACCCATTGTTAAACTTGGGAAACTCATGTGCCTACACGTGAAGTCTGGGGTGAAACTGCCGGATGAGATTGGGAGAATGCAAGCTCTCCAGGAGCTGGAGAGTATCTCCATCCCATGTAACTCTGTGAGGTTAATTGAGGAGATTGGTAGGCTGACAAGATTGCGAAGACTTACTGTTGAAACAACAAGCACTACTGAGAAAATGGGAGACCAAGAAGTGAGGTTCAGGGAAATGTTGGTCAGTTCCCTCACCGAGTTGGGCAGAAATGGCCTTGAGTCACTCTGTATCAGCTACCCTCATGGACAGAACTTCATCCTGGATTCATTGTTTGGCTCTGGCTGCTCTCTTCCAAAGTTTCATGAGCTTGACATAAAGAATTACCTTTGTTGGGTTCCAAGGTGGATAACTATGCTTAGTAGCCTTGTGCACTTATGCCTATCCATGTATGATATTGACGAGGAAGATATGCGAGTTCTGAATGGCATCTCCACCCTGCTATTTCTCCATTTAGAATTAAGGAATCCACCTGAAGAGAGGCTAGTCATTGGTTGCGATGGACTCAGACATCTGAACGAGCTACATGTGTTCTGCCAACATTCCACAATGCCATTGACGTTCGCGCCTGGAGCAATGCCAGAGCTCCACCGTTTACGCCTCGAATTCGGGGCGAGGGAGACGTTGCGCATGTATGGTGATTTTGATTTCGGCATCGAGCATCTTTCGGGACTCCGGGATATCAGAGTTGACATTAACTACTACTCTGGTGGCACTGACATGGATGCAGAAGCAGTGGCTGCCAAGGATGCTATCACCACTGCTTCCATCATCCATCCAAACCGCCCCTTACATGATGTCCGAATGCATGTCACCATGATGTTTACCCTGAAGGAGGCTGCTCAGTCGGTTGGGCTCCAAAGCGCCACGAAAGAATTGAATTTAGGGACGGATTTTCAGCGCACTTTCGTCCAAATTGGTAATGAAACCTCTTTGCCAACTTACTACCAATATATGTCTTTCCTGCTTGTTCAGTTTAGTTACAATTCCTTTTGTTTTTAAATCCATCAGAAGACCTTGATAATCCAGAAGTTCTGCGAAAACTACAGCAGCTATTATCACCTGAGTCTTCGACACGGAACCAGTAGCTTGGGACTTGAAGAAACAACGTATGTATCTTCTGGAAATCTGGCCATCAAGATCAGGTGCGAGTATGGCAAATTGATTGAAATTCGTATAAAAATCCAGGAGATTCGCAATGTTAATGTGAGGTATCTAAGAATCTGGCTTGGAAAT
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| CDS seq | ATGATGGTGGGAGCAACGGTTTCAGCTTCAGCGGGGGTGATGAACTCTCTGCTTGGGAAGCTCTCCACCTTGCTGGACAAAGAGTATACAAAGCACAAAAATGTGGAAAAGGATGTGATGTTCCTGCAAAGGGAGCTACCCAGCATGGAGGCTGTGCTGCAGAAACATGCAATGCAGGACGAGCTTGATGTTCAATTGAAGGCCTGGGTGAGTGAGTTGAGAGAGCTGGCATATGACATTGAGGACTCCATTGATGCTTTCATGGTGCGCATTGAGCACTATAGTGATGAGTCTGCTGGAATTAAGGGGTTTATGAGTAAGAAAATCCACAAGCTCAAGAAGCTCCGTTGTCACCATAAATTTTCGGCGGTGTTTCTTGAACTAAAAGAGCGTGTCGTTGAAGCAAACGAGCGGCGAAGAAGATATGAGGTTGATGGGTCCACATCTGGAACCACAACCAGTGATTGCTTGTTGATTCCCGGTTGCCAGCACTCTATTCTGGTTTAG
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| Protein seq | MMVGATVSASAGVMNSLLGKLSTLLDKEYTKHKNVEKDVMFLQRELPSMEAVLQKHAMQDELDVQLKAWVSELRELAYDIEDSIDAFMVRIEHYSDESAGIKGFMSKKIHKLKKLRCHHKFSAVFLELKERVVEANERRRRYEVDGSTSGTTTSDCLLIPGCQHSILV |
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| Function | Disease resistance protein PIK6-NP [UniProtKB/Swiss-Prot:Q2QZF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0266500 | OsNip_11t0266500-01 | Chr11 | 9144218 | 9150975 | + | RAP2018-11-26 | ||
| CDS seq | ATGATGGTGGGAGCAACGGTTTCAGCTTCAGCGGGGGTGATGAACTCTCTGCTTGGGAAGCTCTCCACCTTGCTGGACAAAGAGTATACAAAGCACAAAAATGTGGAAAAGGATGTGATGTTCCTGCAAAGGGAGCTACCCAGCATGGAGGCTGTGCTGCAGAAACATGCAATGCAGGACGAGCTTGATGTTCAATTGAAGGCCTGGGTGAGTGAGTTGAGAGAGCTGGCATATGACATTGAGGACTCCATTGATGCTTTCATGGTGCGCATTGAGCACTATAGTGATGAGTCTGCTGGAATTAAGGGGTTTATGAGTAAGAAAATCCACAAGCTCAAGAAGCTCCGTTGTCACCATAAATTTTCGGCGGTGTTTCTTGAACTAAAAGAGCGTGTCGTTGAAGCAAACGAGCGGCGAAGAAGATATGAGGTTGATGGGTCCACATCTGGAACCACAACCAGTGATTGCTTGTTGATTCCCGGTTGCCAGCACTCTATTCTGGTTTAG
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| Protein seq | MMVGATVSASAGVMNSLLGKLSTLLDKEYTKHKNVEKDVMFLQRELPSMEAVLQKHAMQDELDVQLKAWVSELRELAYDIEDSIDAFMVRIEHYSDESAGIKGFMSKKIHKLKKLRCHHKFSAVFLELKERVVEANERRRRYEVDGSTSGTTTSDCLLIPGCQHSILV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0266500 | OsNip_11t0266500-02 | Chr11 | 9144225 | 9146048 | + | RAP2018-11-26 | ||
| CDS seq | GGAGGTTACCGTGGTATTTATATTACCGTACCCCGCGGTAAGCCCGGTAACCGTGGTAACCGCGCGGTTACAGTCGGTAAGTCGAACCCTGCCACTACCCACTGTTCTATATGCACACACCTGTAA |
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| Protein seq | GGYRGIYITVPRGKPGNRGNRAVTVGKSNPATTHCSICTHL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.605401 | 2.375007 | 2.089475 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0265900 | RBH | 1.210552 | 0.971954 | 0.596717 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g16470 | SBH | 0.795889 | 0.647576 | 0.148484 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0266500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0010030 | RBH | 0.526450 | 9.907660 | 2.917598 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0009920 | RBH | 0.808779 | 1.519399 | 1.861646 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0009940 | RBH | 1.428960 | 3.468363 | 6.269007 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009750 | RBH | 0.264485 | 0.056267 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009880 | RBH | 6.067657 | 4.959561 | 9.229426 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0140000 | RBH | 3.0084565 | 20.921252 | 3.5429855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009860 | RBH | 0.480690 | 0.046411 | 0.319770 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0141100 | RBH | 2.282643 | 51.407671 | 4.088903 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009990 | RBH | 0.364934 | 0.186711 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0010100 | RBH | 0.409760 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009860 | RBH | 5.890926 | 13.195563 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0009700 | RBH | 0.447906 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009880 | RBH | 0.386127 | 4.477249 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G010030 | RBH | 0.546820 | 0.634227 | 0.690761 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009790 | RBH | 1.320475 | 23.868324 | 1.988293 |
