Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_11g0226700 OGI:11020570 | 11/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr11:6621671-6629238
Gene Symbol -
DNA seq

GCACAAGGGGATCGAATAGGAGGATAAGCCCGTCGAGTAGCCAGAAATCGCAGATGGAGGCAGCTATTTTGAGCGGTTTGTTGAAAATACTCGCGTCGAGGATGCTCTCTCTGGTAGATCAGAAGTACAATCTGTACAAGGGATTCAAAGGCGACGCAGAATTTCTGTTGAAGGAGCTCCGCATGATCGCCGGAGCCATTGACGAGCAGCTCTTGCGGACGGTGAGCCGTGGAAGCGTGCTGCTGCTGTCCATCGAAGAGCTTCGCGACCTGGCTCGCGACATAGAGGACTGCGTAGATCGCATCATGTATCAGAAAACTCGGGATCAGCAAGCTTCTCTTTTCAGTATCAATTCCGTCACGGGAACGTCGAAGCTTCAGTTGGCCAAAGAGATGAAGAAGCTGAGGAAGAGAGCAGACGAAGCGAAAGAGCGGCGAGAAAGATACACGGTGGTCGTCGGTCATCAGTCCTCCCCTGTCAGCTCGGATGAGCAACGCTGCTCCGGTGCATCTGACGGGAGAAACCTCCAGGCTGATCTCGTCGGCATCGACCTGCCCCGAGAAGAACTTCTGGAGCATCTGAAAGAAGCCGAGCCGAAGAAGCTTAAGGTGATATCGATTGTTGGGTTCTGCGGCTTGGGGAAGACTGCACTTGCAAGGGAGTTGTACAACAACAGCGGTCTCGGCCGGAGTTTCAGTAAACAGGCCTGGGTTTCTGCGGCACATGGTGATCCGAGCAAGGTGTTGAGGGAGATAATCGGACAACTGGTATCTAACCCGCCATCGGATGCCTCCGTTGTCGACCTGGACCAGCTTATTGTAAATCTCACTGATCAGCTGACCAACTTGAGGTATCAACAATTCTTCTTCTAATTAGGCTGATTTAAGTTCCACATGCTCTGCTCCATTTTTTCATACCCGTGATTCGATTTATGTTTCCCTTATGGAGAAATTTTATAGTCCTTAAGAAAGTAACTGAAGATACTAAGATTTTACACTAAAATTTTTGGTATTTCAAGGTACCAAATTTTACACTAGAAAAATATGATACCTCCTGGTATTTTCTCAAGGATTGTAAAATTACCCTTCCCTTATGCTATTCAGGTTTCTTCAGATTGTTGATATGCTTTAGAGTGGTTATAGAGAGCAGAGTTTCTTTTTATGTTTTTTAGAAACTACAGTACTGTAATACTGCTGCCTACCTTGGACGGTATAGTGTTATCACCTTCACAATATCTCCAACTATGATGGAGATATATCATGATGTATGAAGATATATATGTCCAGTCCTCAGTCCTATATCCGTCTCTGTCTCCCTCTCAAGAAAGCAGGTGGCTAGGCTTATGGTAGCTGTGCTGAGGTGAGGTAATGGTTGTATAGCCGTATCACGATGGTATTATCGAGTTTCAGGGTGCTATCATAGAGATAGCATCATGCTCGTTTATAGAGGTATTATTGCGTTTTACATTGCTATCATGGTACATTGGTTTTATCACCATATAACCTGATATTGTGATACTACAGTGTGTCATATAACTCCACTCCGGTGTGTCATGGTAACTTGGCTTTCAGTTCTAGATTTGGAACTCTCTACTTTTCTGTGTGTTTAGTTGATTACAGTGTAATAGCGGTGTATAGTTTCCATGAGTTATATACTCATGTTATCTTCCAAACAAACAACAAACTATAGACTATGCAGACAACTAAATTAACGCAGTAAAATAATTCAGTGTGAGGCCTACGGATTGGACAATTACAGTACAGTGAAAACAGAGGCTGTGCTTGCTTGGCCCATGGTTGTTATTTGTTCATACGGAGTGGATTTTTACTAATGTCCATTCCCTTTTGTTGTTTCATGTTATTAGGTATTTCATTGTAATAGATGACATGCGAAAAGATTTGTGGAGTACTATTGAATCTGCCTTCCCGAAGGATGGTTTCAGCAGTAGAATAGTGGTGACCACAACAGTGCAATCAGTAGCTAAAGCCTGCAGTTCAGCCAATGGCTATGTATATAAAATTAGAAGGCTAGATAAGATACACTCAAAAAAATTGTTCTTGAAGAATGCTTGTCCGGTGGAATATCAAGATTACATTCAGCCTGATTCAGTACGGATTTTGAAGAAATGTGATGGTCAAGCACTCGCCCTTCTTACAGTAGGTCAATTCTTGCGAAAAATGGGCTGGCCAAGAGAACCCAAGTGTGAAGATGCTTGCAACCAGCTATGCAATCATCTGGAGGATGACGACACCTTGGAGAGAATGCGACAGGTGCTGATTCATGAGTACTCTACACTATCTTGCCATGCTCTCAAAGCCTGCTTGCTATATTTTGGCATGTTCCCCAGTGGTCATTCAATCAGGAGAAAAAGACTACTCAGGCGATGGTCAGCTGAAGGATTTGTAGAAGCACTACCTTCAGGTTCTTTTCCTGATCCAGCAGTTGAGAATTTCAATAAGCTCATGGACAGAAATATCATTCAACCCATTGATCTAAGCAGCAACGAGGAGGTGAAGACATGTCAAACTTATGGCATGATGCGCGAGTTCATTTTGCTCAAATCTATTTCTCAGGATTTTATTGCTGTCTTTGGTGACAAGAAGCTCCAATACCAACATGTCCGTCGCCTTTGTCTCCAAAACAATAGTGCTGTAGATAGCAGCAATCTTGACATCGATTTGACTCTTGTCCGATCTCTGGTAGTCTTTGGGAAAGCAGGTAAAGCTATTTTGGATTTCAAGAAGTATCAACTGCTTCGAGTCTTAGATCTTGAAGAATGTACTGACTTGGACGATGATCATCTCATTCAAGTGTGCAACCTTTTTCTTCTAAGATATTTGAGCCTTGGGGGCAAAGTCACCAAACTTCCAGAAGAGATAACTAAACTGAAACTTTTGGAGACACTTGATCTTAGGAGAAGAAAGGAGGTGACTATCAACCTGTCAACAGAAGTCATCAAGCTACCATATTTAATTAATCTGCTTGGAAAGTTTAAGCTCCTAAATAAAGCCAAGAGATTGAACGAACTGCAGAAGTTTTTGTCCGAAAACTGTAGATTGCAGACACTAGCAGGATTTAGCACAGACGGAAGTGAAGGATTTCCAGAACTTATGGGCCACATGAAGCAATTGAGAAAGGTGAAAGTTTGGTGTACTGAACTATCAGCAAGTAGTTCTGGGTTTACTAATCTTCAAAATGCCATTCAAAAATTTATACATGACGAACAGAATGGATTCAACGATCCTCGCTCTTTGTCGCTTAACTTTGATAATTGCCCTGAAGACTTCCTCTACGAGATAAAAGCCCCATGCTACCTTCGATCGTTGAAATTACATGCTAAATTACTGGAATCGCCCAAATTTGTGGTACTATTGCGTGGCCTCCAGGAGTTGTGCATTTCATCATCAGCTACAAAATTGACCACAGGTCTTCTTTCAGCTTTGAGTAACCTGAGGAAATTGAAGTATCTCAAGCTGATTGCAGATCAACTTGAGGAGTTCATTATTAAGGATAATGCATTGCCAAGCCTGCTAAGCCTATGTTTTGTGCTGAACCGTCCTACATTCCCGGTAATCAAAGGAAATGCTTTGAGGTTTCTCAAATCACTCCAGCTTCTCTGTAAAAATCTAGTTGGCCTTTCAGAGATCAACATTAATTGTCTCAAACGCCTTGAGGAAGTCGTTCTTCATCCATGTGTGAACAAAGCAACTAAAGTTACATGGGAAAGGGCAGCTAAGGAACATCCCAATAGGCCAAAAGTTTTGGTGCTTGAAAAGGTTGATCTAGCAGATGGCCATGAAGAAGATTCAGATTCGACCCCAACTGAAATTGTGACAAATAAGGAATCTACTGTTGCAGGAAATGGAGCAGATATTGACAAACAGAACTATATTGACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTTTCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAATGGTGTGGAGTCCTCTTGTGCCTGACGACACGGTCAGTTTTGTGGAATAATTCCCTTCTCTGTTCTTATTGCAACAAAGTGAAACAAAATTTGCGAAAGAATTCTACTGAATTGAATATGGAATAAATTTGCAAAAAAAATTCTTCTTTATTAAATCTGTACAGTATTTTTTTCTGTAAAGTTCAAGTTTACAGGTTATCAAAAGATAAAAGTAAGAAAATTTTGGACAACAATACAAATGGATTTGTATTCCCCAAAATTTCAAGTGCTTATATTTGTTAGTTTCCATCAATCAGCACTTTAGGCTGACTCTATGTTTCCAACTTGACATATTCATGCTATCGTAATTGGAACCTACAAATTTGATACGCCTTCTGATTTCAAATATAATTTGTTTTTGATGAGCACATGAATAGAAAATTTATCTTCAAATTACTTTGTTACATCTATTTATACTAGATCGGAAAATATGCCATCTCTTTGAGAGTGATAGGATTTATTTTATTTGGTGTGGCTAAATATGGAAGAAAAAGGATGAAAAAGTGTCCATGTTATAAAATTACTTAGTAAAGATTTTTTTACTTAGTAAAGAGTTGAGAGTGCTAAAACAACTTGTATTTACATTAGAAATCAGAAAGAGTAATAATCTAGTTAGTTGCAGTTTCTTTAAACCAATAGTTGCATTTACGATCAACTGAAATTAATCTTGCCATGTAAATTGCAAGCTGCTTATGCTGTCGCTGATGATTAATCCGTATGGCTTCTGTTTTCTTTTATTTTTAAACAAATGCTTAGCCGGATTATGTGTATGTGTACCTTTTTCTTTATATTTCTCTATCCAATTTTGTCCAATACTGCTACAGTTGGGCCTTGCTTTAGTACTCCTCCCAGGAAAAACTTAGCAGATCTTACAGCTCCTAAGAAAAGGTTTTCGCACCCATATCCCAACTGAACACCAACGCGCTATTTGCATCTAAAGTTGTAAGCATTTCATGTCTTAGAAGTAGTTGGACGACTCAGCCACCAACCTAGCATTGATGACTAGAAAACAGCTTTGACCTTAAGTAGCTACTAGTTCAAATCTTTTGTTTTTTCAAAACCTGTTTTCATGCTCAGTTTGGCTCTTCTTTCTCAAGAGAAATAACCCTGTTTCTATATCAGTGACTATAAAAATCAGGGTTTGTGTGAATACAAAGCGGTTAGAAAACATATTGGAGGAGTGGTTTTGCAGTGCTCTTACTCTCTAACTGATCAACTGTGAAACTTTGTTCATTGAGATCTTTTACAGTACTTGGAAGGTACCTCCTTAACCAATTGATACCCATCATTAATTCATTTTTTTCGATAACTTCTAACTGGGCTCACTCCTGGCCTCTGCATGAAATGCACACAGCTACAAAACAGGATCTAACTAGACTCTCAACACAAAACTAAGAAATTAGTGACTATCAAGCCGAAGACTAGATCGCCACCCATGCTCTAGGGTAAAAAACTCATGTACCACCTGATCCAAACAACGCGATACCACCACAATACCTGAAGACCCGGTTTGTGGAGGATAGACCTGGTGCGTAGCCACCTGGTGACTAAAGCAATAACCTGCAAAGGAGAAGATACCATCTTATTATCAAAAATTGCCCCGTTTCAGCTTAGCCAAATGGACCAACAAATAGCTGTTGCACCCATCAAAAGCAGATTTCTCATATCCTTAGGAACACATGTAAACCAACGCCCAAACATATGATTAAAATTTTGAGGATGTTGTAAGTTATAAGCCATATGAATCACGGATCAAACCAAACGAGTAACATGACATTGGAAGAACAAATGTTGGATGGTTTCGTCCTTATGACAGAAGCAACGTTTCTTATTACCTTTCCACTTTCGCTTAGCTAGATTATCCTTGGTTAGAATTATGCCCCGACGTAAGTACCAAAAGAAAATCTTTACTTTGAGCAATACTTTTACCTTCCAAATACATCTATTTATATTCGGGATGCCCGTATGGACAAGAGCTAAGTAATGAGAATTGACCGAAAAGATCCCATTGGGGGTGAGATTCCATCGAAATTCATCTTGCTCCTGTGCCAACACCAAATCAGCTATGCGAGGCCATAAATTGTGCCATGCGGCTAATTTTGCTCCGATTAAATCTCGTCTCCATGAAAAGCTTGGAGGATTGTTTTGAAAGATTTATGAGATAGTCGATTGTTTATGCCTTGCTATGTTATAGAGACAAGGATATTAATCTCTCAACGAGGCATTACCCAACCATTTATCCTCCCAAAACCTTATTTGAGAGCTTTCCCTAATACGAAAGGACCTAAACCTAAGAAAATCTTGTTTGGCTTTCATAAGGCTAGCCCAAAAATATGAGTCCCCCGCTTTTCAAAAAGCCTGAGATAAAGGTTGCGATCCCAAATATTTATTACGTAGCATATCTTGCCATAATTTTGGAACAGAAAATAGTATTAATAAGGGTAGCTTAGTAATTGCTCAATCCCAGTTCCCCATTCCCTGCCTAGCGGCATCATGCCAAAGTGGTGAAGTCCTAAGTAGACTTACTATGTTTTCAACCACACACAACCCACCTAAGGCACGTTGTGTCATGTTATATGGAATACCATTTGTTGATTGGTAAGTGTTGTATACTTGTGTTTCATGGTGAGATTAATACAAGAACTACTAGGGAAAAGTTTCATTTGTAGTCATGTGTGCAACATTGCTAGAAAAATAGTAACTGTACTGTAATTGCGAAGCCAAAAGGAAATCGAAGCAAGTTATACATGCTGCAGGGCACTTTAGTTAATATATGTACCTTAATTAGCTGAAAATCTCTTTATCCAAATATAGTATCATGACGGCCATTTTGATTTTGCAGTACATTGGAAGAGTTGTTTGTGGATTGTCATTGCTCTGAGCTGATTTACTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTTCAACGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTACTTCAATTGCAATTTGCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAATTTGCAAGGTTTGTCTTTCTTCAATTCAAATCACTGGACATCTGTCTGGTCAAAATGAAGTTCACCATGTTGTTCTTTGTTGTTAGTGCTTGTAATTGTTGTAACATATTCAGAAACACATTGTTGTACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTACCTTGGTGCGGTGCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTATGTTTTTTAATTAATAAAAAAACTGTTTTTAATAATATGGGAATAAACCTTTCAATAGATTGTTTTTCTCTTGCAAATCTTAACCTTTTAACTTTTAGGCACACCTAGCTACCTACATCCTGCCATTGCGAATAAATTTGTGGTTTGACACCACCATGCTCATTACTATGTGCAACTCTTCACAAGAGCCGAGTAGGCAACCACAGAGCGTATGCTGATCACACTATGCATAGTAGTGAGTGGTTCAATGAGGGAATG

More
CDS seq

TCTGGGTTTACTAATCTTCAAAATGCCATTCAAAAATTTATACATGACGAACAGAATGGATTCAACGATCCTCGCTCTTTGTCGCTTAACTTTGATAATTGCCCTGAAGACTTCCTCTACGAGATAAAAGCCCCATGCTACCTTCGATCGTTGAAATTACATGCTAAATTACTGGAATCGCCCAAATTTGTGGTACTATTGCGTGGCCTCCAGGAGTTGTGCATTTCATCATCAGCTACAAAATTGACCACAGGTCTTCTTTCAGCTTTGAGTAACCTGAGGAAATTGAAGTATCTCAAGCTGATTGCAGATCAACTTGAGGAGTTCATTATTAAGGATAATGCATTGCCAAGCCTGCTAAGCCTATGTTTTGTGCTGAACCGTCCTACATTCCCGGTAATCAAAGGAAATGCTTTGAGGTTTCTCAAATCACTCCAGCTTCTCTGTAAAAATCTAGTTGGCCTTTCAGAGATCAACATTAATTGTCTCAAACGCCTTGAGGAAGTCGTTCTTCATCCATGTGTGAACAAAGCAACTAAAGTTACATGGGAAAGGGCAGCTAAGGAACATCCCAATAGGCCAAAAGTTTTGGTGCTTGAAAAGGTTGATCTAGCAGATGGCCATGAAGAAGATTCAGATTCGACCCCAACTGAAATTGTGACAAATAAGGAATCTACTGTTGCAGGAAATGGAGCAGATATTGACAAACAGAACTATATTGACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTTTCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAATGGTGTGGAGTCCTCTTGTGCCTGA

More
Protein seq

SGFTNLQNAIQKFIHDEQNGFNDPRSLSLNFDNCPEDFLYEIKAPCYLRSLKLHAKLLESPKFVVLLRGLQELCISSSATKLTTGLLSALSNLRKLKYLKLIADQLEEFIIKDNALPSLLSLCFVLNRPTFPVIKGNALRFLKSLQLLCKNLVGLSEININCLKRLEEVVLHPCVNKATKVTWERAAKEHPNRPKVLVLEKVDLADGHEEDSDSTPTEIVTNKESTVAGNGADIDKQNYIDKQNYPTSNMSRAMVSPALTEPCSAGNGVESSCA

Function Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_11g0226700 OsNip_11t0226700-01 Chr11 6624842 6629238 + RAP2018-11-26
CDS seq

TCTGGGTTTACTAATCTTCAAAATGCCATTCAAAAATTTATACATGACGAACAGAATGGATTCAACGATCCTCGCTCTTTGTCGCTTAACTTTGATAATTGCCCTGAAGACTTCCTCTACGAGATAAAAGCCCCATGCTACCTTCGATCGTTGAAATTACATGCTAAATTACTGGAATCGCCCAAATTTGTGGTACTATTGCGTGGCCTCCAGGAGTTGTGCATTTCATCATCAGCTACAAAATTGACCACAGGTCTTCTTTCAGCTTTGAGTAACCTGAGGAAATTGAAGTATCTCAAGCTGATTGCAGATCAACTTGAGGAGTTCATTATTAAGGATAATGCATTGCCAAGCCTGCTAAGCCTATGTTTTGTGCTGAACCGTCCTACATTCCCGGTAATCAAAGGAAATGCTTTGAGGTTTCTCAAATCACTCCAGCTTCTCTGTAAAAATCTAGTTGGCCTTTCAGAGATCAACATTAATTGTCTCAAACGCCTTGAGGAAGTCGTTCTTCATCCATGTGTGAACAAAGCAACTAAAGTTACATGGGAAAGGGCAGCTAAGGAACATCCCAATAGGCCAAAAGTTTTGGTGCTTGAAAAGGTTGATCTAGCAGATGGCCATGAAGAAGATTCAGATTCGACCCCAACTGAAATTGTGACAAATAAGGAATCTACTGTTGCAGGAAATGGAGCAGATATTGACAAACAGAACTATATTGACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTTTCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAATGGTGTGGAGTCCTCTTGTGCCTGA

More
Protein seq

SGFTNLQNAIQKFIHDEQNGFNDPRSLSLNFDNCPEDFLYEIKAPCYLRSLKLHAKLLESPKFVVLLRGLQELCISSSATKLTTGLLSALSNLRKLKYLKLIADQLEEFIIKDNALPSLLSLCFVLNRPTFPVIKGNALRFLKSLQLLCKNLVGLSEININCLKRLEEVVLHPCVNKATKVTWERAAKEHPNRPKVLVLEKVDLADGHEEDSDSTPTEIVTNKESTVAGNGADIDKQNYIDKQNYPTSNMSRAMVSPALTEPCSAGNGVESSCA

More
Gene Transcript Chromosome Start End Strand Source
OsNip_11g0226700 OsNip_11t0226700-02 Chr11 6621671 6629011 + IsoSeq
CDS seq

ATGAGTACTCTACACTATCTTGCCATGCTCTCAAAGCCTGCTTGCTATATTTTGGCATGTTCCCCAGTGGTCATTCAATCAGGAGAAAAAGACTACTCAGGCGATGGTCAGCTGAAGGAT

Protein seq

MSTLHYLAMLSKPACYILACSPVVIQSGEKDYSGDGQLKD

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.462033 0.806252 1.285518

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0225100 RBH 0.515996 0.357768 1.940268
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g11940 RBH 0.282307 0.555068 0.426664
Nipponbare | IRGSP 1.0 | RAP-db Os11g0226700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0008020 RBH 0.275110 12.469207 1.879411
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0008030 RBH 0.222725 1.244013 0.830465
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0007900 RBH 0.928213 4.725027 1.894474
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0007740 SBH 0.194044 0.375342 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0007850 RBH 9.957027 27.262516 22.811005
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0105700 RBH 13.2849685 34.4607395 19.813781
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0007890 RBH 0.479542 1.781460 1.025165
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0110900 SBH 8.599647 14.278709 6.833309
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0007920 SBH 0.096497 0.112980 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0007970 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0007820 SBH 8.138488 5.528563 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0007830 SBH 0.214812 0.0 0.522603
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0007970 RBH 1.748841 14.907711 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G007990 RBH 0.278656 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0007800 RBH 0.159548 11.635334 0.659193
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.