Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0226700 | OGI:11020570 | 11/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:6624842-6629238 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTCTGGGTTTACTAATCTTCAAAATGCCATTCAAAAATTTATACATGACGAACAGAATGGATTCAACGATCCTCGCTCTTTGTCGCTTAACTTTGATAATTGCCCTGAAGACTTCCTCTACGAGATAAAAGCCCCATGCTACCTTCGATCGTTGAAATTACATGCTAAATTACTGGAATCGCCCAAATTTGTGGTACTATTGCGTGGCCTCCAGGAGTTGTGCATTTCATCATCAGCTACAAAATTGACCACAGGTCTTCTTTCAGCTTTGAGTAACCTGAGGAAATTGAAGTATCTCAAGCTGATTGCAGATCAACTTGAGGAGTTCATTATTAAGGATAATGCATTGCCAAGCCTGCTAAGCCTATGTTTTGTGCTGAACCGTCCTACATTCCCGGTAATCAAAGGAAATGCTTTGAGGTTTCTCAAATCACTCCAGCTTCTCTGTAAAAATCTAGTTGGCCTTTCAGAGATCAACATTAATTGTCTCAAACGCCTTGAGGAAGTCGTTCTTCATCCATGTGTGAACAAAGCAACTAAAGTTACATGGGAAAGGGCAGCTAAGGAACATCCCAATAGGCCAAAAGTTTTGGTGCTTGAAAAGGTTGATCTAGCAGATGGCCATGAAGAAGATTCAGATTCGACCCCAACTGAAATTGTGACAAATAAGGAATCTACTGTTGCAGGAAATGGAGCAGATATTGACAAACAGAACTATATTGACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTTTCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAATGGTGTGGAGTCCTCTTGTGCCTGACGACACGGTCAGTTTTGTGGAATAATTCCCTTCTCTGTTCTTATTGCAACAAAGTGAAACAAAATTTGCGAAAGAATTCTACTGAATTGAATATGGAATAAATTTGCAAAAAAAATTCTTCTTTATTAAATCTGTACAGTATTTTTTTCTGTAAAGTTCAAGTTTACAGGTTATCAAAAGATAAAAGTAAGAAAATTTTGGACAACAATACAAATGGATTTGTATTCCCCAAAATTTCAAGTGCTTATATTTGTTAGTTTCCATCAATCAGCACTTTAGGCTGACTCTATGTTTCCAACTTGACATATTCATGCTATCGTAATTGGAACCTACAAATTTGATACGCCTTCTGATTTCAAATATAATTTGTTTTTGATGAGCACATGAATAGAAAATTTATCTTCAAATTACTTTGTTACATCTATTTATACTAGATCGGAAAATATGCCATCTCTTTGAGAGTGATAGGATTTATTTTATTTGGTGTGGCTAAATATGGAAGAAAAAGGATGAAAAAGTGTCCATGTTATAAAATTACTTAGTAAAGATTTTTTTACTTAGTAAAGAGTTGAGAGTGCTAAAACAACTTGTATTTACATTAGAAATCAGAAAGAGTAATAATCTAGTTAGTTGCAGTTTCTTTAAACCAATAGTTGCATTTACGATCAACTGAAATTAATCTTGCCATGTAAATTGCAAGCTGCTTATGCTGTCGCTGATGATTAATCCGTATGGCTTCTGTTTTCTTTTATTTTTAAACAAATGCTTAGCCGGATTATGTGTATGTGTACCTTTTTCTTTATATTTCTCTATCCAATTTTGTCCAATACTGCTACAGTTGGGCCTTGCTTTAGTACTCCTCCCAGGAAAAACTTAGCAGATCTTACAGCTCCTAAGAAAAGGTTTTCGCACCCATATCCCAACTGAACACCAACGCGCTATTTGCATCTAAAGTTGTAAGCATTTCATGTCTTAGAAGTAGTTGGACGACTCAGCCACCAACCTAGCATTGATGACTAGAAAACAGCTTTGACCTTAAGTAGCTACTAGTTCAAATCTTTTGTTTTTTCAAAACCTGTTTTCATGCTCAGTTTGGCTCTTCTTTCTCAAGAGAAATAACCCTGTTTCTATATCAGTGACTATAAAAATCAGGGTTTGTGTGAATACAAAGCGGTTAGAAAACATATTGGAGGAGTGGTTTTGCAGTGCTCTTACTCTCTAACTGATCAACTGTGAAACTTTGTTCATTGAGATCTTTTACAGTACTTGGAAGGTACCTCCTTAACCAATTGATACCCATCATTAATTCATTTTTTTCGATAACTTCTAACTGGGCTCACTCCTGGCCTCTGCATGAAATGCACACAGCTACAAAACAGGATCTAACTAGACTCTCAACACAAAACTAAGAAATTAGTGACTATCAAGCCGAAGACTAGATCGCCACCCATGCTCTAGGGTAAAAAACTCATGTACCACCTGATCCAAACAACGCGATACCACCACAATACCTGAAGACCCGGTTTGTGGAGGATAGACCTGGTGCGTAGCCACCTGGTGACTAAAGCAATAACCTGCAAAGGAGAAGATACCATCTTATTATCAAAAATTGCCCCGTTTCAGCTTAGCCAAATGGACCAACAAATAGCTGTTGCACCCATCAAAAGCAGATTTCTCATATCCTTAGGAACACATGTAAACCAACGCCCAAACATATGATTAAAATTTTGAGGATGTTGTAAGTTATAAGCCATATGAATCACGGATCAAACCAAACGAGTAACATGACATTGGAAGAACAAATGTTGGATGGTTTCGTCCTTATGACAGAAGCAACGTTTCTTATTACCTTTCCACTTTCGCTTAGCTAGATTATCCTTGGTTAGAATTATGCCCCGACGTAAGTACCAAAAGAAAATCTTTACTTTGAGCAATACTTTTACCTTCCAAATACATCTATTTATATTCGGGATGCCCGTATGGACAAGAGCTAAGTAATGAGAATTGACCGAAAAGATCCCATTGGGGGTGAGATTCCATCGAAATTCATCTTGCTCCTGTGCCAACACCAAATCAGCTATGCGAGGCCATAAATTGTGCCATGCGGCTAATTTTGCTCCGATTAAATCTCGTCTCCATGAAAAGCTTGGAGGATTGTTTTGAAAGATTTATGAGATAGTCGATTGTTTATGCCTTGCTATGTTATAGAGACAAGGATATTAATCTCTCAACGAGGCATTACCCAACCATTTATCCTCCCAAAACCTTATTTGAGAGCTTTCCCTAATACGAAAGGACCTAAACCTAAGAAAATCTTGTTTGGCTTTCATAAGGCTAGCCCAAAAATATGAGTCCCCCGCTTTTCAAAAAGCCTGAGATAAAGGTTGCGATCCCAAATATTTATTACGTAGCATATCTTGCCATAATTTTGGAACAGAAAATAGTATTAATAAGGGTAGCTTAGTAATTGCTCAATCCCAGTTCCCCATTCCCTGCCTAGCGGCATCATGCCAAAGTGGTGAAGTCCTAAGTAGACTTACTATGTTTTCAACCACACACAACCCACCTAAGGCACGTTGTGTCATGTTATATGGAATACCATTTGTTGATTGGTAAGTGTTGTATACTTGTGTTTCATGGTGAGATTAATACAAGAACTACTAGGGAAAAGTTTCATTTGTAGTCATGTGTGCAACATTGCTAGAAAAATAGTAACTGTACTGTAATTGCGAAGCCAAAAGGAAATCGAAGCAAGTTATACATGCTGCAGGGCACTTTAGTTAATATATGTACCTTAATTAGCTGAAAATCTCTTTATCCAAATATAGTATCATGACGGCCATTTTGATTTTGCAGTACATTGGAAGAGTTGTTTGTGGATTGTCATTGCTCTGAGCTGATTTACTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTTCAACGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTACTTCAATTGCAATTTGCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAATTTGCAAGGTTTGTCTTTCTTCAATTCAAATCACTGGACATCTGTCTGGTCAAAATGAAGTTCACCATGTTGTTCTTTGTTGTTAGTGCTTGTAATTGTTGTAACATATTCAGAAACACATTGTTGTACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTACCTTGGTGCGGTGCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTATGTTTTTTAATTAATAAAAAAACTGTTTTTAATAATATGGGAATAAACCTTTCAATAGATTGTTTTTCTCTTGCAAATCTTAACCTTTTAACTTTTAGGCACACCTAGCTACCTACATCCTGCCATTGCGAATAAATTTGTGGTTTGACACCACCATGCTCATTACTATGTGCAACTCTTCACAAGAGCCGAGTAGGCAACCACAGAGCGTATGCTGATCACACTATGCATAGTAGTGAGTGGTTCAATGAGGGAATG
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| CDS seq | TCTGGGTTTACTAATCTTCAAAATGCCATTCAAAAATTTATACATGACGAACAGAATGGATTCAACGATCCTCGCTCTTTGTCGCTTAACTTTGATAATTGCCCTGAAGACTTCCTCTACGAGATAAAAGCCCCATGCTACCTTCGATCGTTGAAATTACATGCTAAATTACTGGAATCGCCCAAATTTGTGGTACTATTGCGTGGCCTCCAGGAGTTGTGCATTTCATCATCAGCTACAAAATTGACCACAGGTCTTCTTTCAGCTTTGAGTAACCTGAGGAAATTGAAGTATCTCAAGCTGATTGCAGATCAACTTGAGGAGTTCATTATTAAGGATAATGCATTGCCAAGCCTGCTAAGCCTATGTTTTGTGCTGAACCGTCCTACATTCCCGGTAATCAAAGGAAATGCTTTGAGGTTTCTCAAATCACTCCAGCTTCTCTGTAAAAATCTAGTTGGCCTTTCAGAGATCAACATTAATTGTCTCAAACGCCTTGAGGAAGTCGTTCTTCATCCATGTGTGAACAAAGCAACTAAAGTTACATGGGAAAGGGCAGCTAAGGAACATCCCAATAGGCCAAAAGTTTTGGTGCTTGAAAAGGTTGATCTAGCAGATGGCCATGAAGAAGATTCAGATTCGACCCCAACTGAAATTGTGACAAATAAGGAATCTACTGTTGCAGGAAATGGAGCAGATATTGACAAACAGAACTATATTGACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTTTCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAATGGTGTGGAGTCCTCTTGTGCCTGA
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| Protein seq | SGFTNLQNAIQKFIHDEQNGFNDPRSLSLNFDNCPEDFLYEIKAPCYLRSLKLHAKLLESPKFVVLLRGLQELCISSSATKLTTGLLSALSNLRKLKYLKLIADQLEEFIIKDNALPSLLSLCFVLNRPTFPVIKGNALRFLKSLQLLCKNLVGLSEININCLKRLEEVVLHPCVNKATKVTWERAAKEHPNRPKVLVLEKVDLADGHEEDSDSTPTEIVTNKESTVAGNGADIDKQNYIDKQNYPTSNMSRAMVSPALTEPCSAGNGVESSCA |
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| Function | Disease resistance protein RGA4 [UniProtKB/Swiss-Prot:F7J0M6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0226700 | Os11t0226700-01 | Chr11 | 6624842 | 6629238 | + | irgsp1_rep | ||
| CDS seq | TCTGGGTTTACTAATCTTCAAAATGCCATTCAAAAATTTATACATGACGAACAGAATGGATTCAACGATCCTCGCTCTTTGTCGCTTAACTTTGATAATTGCCCTGAAGACTTCCTCTACGAGATAAAAGCCCCATGCTACCTTCGATCGTTGAAATTACATGCTAAATTACTGGAATCGCCCAAATTTGTGGTACTATTGCGTGGCCTCCAGGAGTTGTGCATTTCATCATCAGCTACAAAATTGACCACAGGTCTTCTTTCAGCTTTGAGTAACCTGAGGAAATTGAAGTATCTCAAGCTGATTGCAGATCAACTTGAGGAGTTCATTATTAAGGATAATGCATTGCCAAGCCTGCTAAGCCTATGTTTTGTGCTGAACCGTCCTACATTCCCGGTAATCAAAGGAAATGCTTTGAGGTTTCTCAAATCACTCCAGCTTCTCTGTAAAAATCTAGTTGGCCTTTCAGAGATCAACATTAATTGTCTCAAACGCCTTGAGGAAGTCGTTCTTCATCCATGTGTGAACAAAGCAACTAAAGTTACATGGGAAAGGGCAGCTAAGGAACATCCCAATAGGCCAAAAGTTTTGGTGCTTGAAAAGGTTGATCTAGCAGATGGCCATGAAGAAGATTCAGATTCGACCCCAACTGAAATTGTGACAAATAAGGAATCTACTGTTGCAGGAAATGGAGCAGATATTGACAAACAGAACTATATTGACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTTTCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAATGGTGTGGAGTCCTCTTGTGCCTGA
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| Protein seq | SGFTNLQNAIQKFIHDEQNGFNDPRSLSLNFDNCPEDFLYEIKAPCYLRSLKLHAKLLESPKFVVLLRGLQELCISSSATKLTTGLLSALSNLRKLKYLKLIADQLEEFIIKDNALPSLLSLCFVLNRPTFPVIKGNALRFLKSLQLLCKNLVGLSEININCLKRLEEVVLHPCVNKATKVTWERAAKEHPNRPKVLVLEKVDLADGHEEDSDSTPTEIVTNKESTVAGNGADIDKQNYIDKQNYPTSNMSRAMVSPALTEPCSAGNGVESSCA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0226700 | RBH | 0.462033 | 0.806252 | 1.285518 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11940 | RBH | 0.282307 | 0.555068 | 0.426664 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0225100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008020 | RBH | 0.275110 | 12.469207 | 1.879411 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008030 | RBH | 0.222725 | 1.244013 | 0.830465 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007900 | RBH | 0.928213 | 4.725027 | 1.894474 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007740 | SBH | 0.194044 | 0.375342 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007850 | RBH | 9.957027 | 27.262516 | 22.811005 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0105700 | RBH | 13.2849685 | 34.4607395 | 19.813781 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007890 | RBH | 0.479542 | 1.781460 | 1.025165 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0110900 | SBH | 8.599647 | 14.278709 | 6.833309 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007920 | SBH | 0.096497 | 0.112980 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007970 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007820 | SBH | 8.138488 | 5.528563 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007830 | SBH | 0.214812 | 0.0 | 0.522603 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007970 | RBH | 1.748841 | 14.907711 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007990 | RBH | 0.278656 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007800 | RBH | 0.159548 | 11.635334 | 0.659193 |
