Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0223400 | OGI:11020290 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:6448155-6449526 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGACGGAAAGCTCTTCACTTTCGTTGTTATTGGGAGTAAGAAACCCCGGAAAGTGCGTAGTTGATACAGAATCCAACCAGTTCCCAGGATGTATAGATGTGTCGGATCAGAAAGAAAGCTCTTCACTTTCGTTGTTATTGGGAGTAAGAAACCCTGAAAAGTGCGCAGTTGATGCAGAATCCAGTCAGTTTCCAAGATGTGTAGATGGGTCGGATCAGAAGGAAAGCTCCTCGCATTCCCTGTGCGCTTCGGTAGTAAGCGATGCTTCAGAAATGCTCGCAGCTAACACTGTAAAATCCAGTGGTGGAAGTGTGGCGGGTGCAAGTGGTAGCGGGAAATGCAAGAAACAAGGCTGCGAGGAGAAAGCCGGAGGAAAAACCATCTTCTGCAGGGCCCATGGCGGAGGCAAGAGGTGCTACTATCCTGGCTGTACAAAGAGCGCCGAAGAGCACACAGACTTCTGCTTAGCTCATATTAGTCGCCGCTGCATGCACGAGGGTTGTTTCCGGTTTGCACGCCGGAAAACTGACTTCTGCAGCAAGCATGGAGGCGGCAAAAAGGGTGAGACTGAGACCCATAAGAAGTCGTCCAGGAGTGCAGAATCTCGCTCTGGAGCCACCATCACTCACGTGAGTTCAGGTAAAAATTGCAAGTCTCCAGGATGCACAGGAACCGCAGACGGAGTCACCATGCTCTGCGAGAAGCATCGCATGAAAATGGCCTGCTCATTTCCAGGCTGCACCAAGATGGCATGGGGGCCGAGTGCACACTGTGTACGCCACGGAGCCGGCAAGAGATGTAAGTTTCTGGGCTGCACCAAGAGCACAAGGCGAAGCACCGATTTCTGCAAGACGCACGGTGGATCAGGAGGTGCAGATGATACTCTGTGCTCATGGCGAGGAGGGGAATCAAGCGTTGGTGGTGGCGAGGACAAGTGTGATAGAATTGCTCGGGGAAGGTCTGGTCTATGTGCAGCTCACAGCGCTCTTGTCCTGGACGACCGTGCTTCCTGCGATGGCACAATAGCCCCAGCAGCCGCCCAGCTGGTCCAGGCAGATGAACTCATCAAACCCGATGTGATAGAACACCCTGCCGTGGAGGCAGGTCGCGATGACAAAGCTGATGGTGGTGTTGGAGGATCAGGATCAGCAGCGGCTGTGGCTGACCAAAGACTAGATTTGAATGCCGAGGCGATTATTACACAACATTTCTTTGTTTGAGGGGAAAAAAAAAACAGGAAAGCTAGTCCTGTGTTGATTTATTTGTTGTAAGCGCCAATGTAGTTCATTACTTAGTACTGCTGGTAATTAATTCATGTACTTTTGTATATATAAGAGAGTAGTGCAATTGGGACTGGGGGCGGTTGGGTTG
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| CDS seq | CAGACGGAAAGCTCTTCACTTTCGTTGTTATTGGGAGTAAGAAACCCCGGAAAGTGCGTAGTTGATACAGAATCCAACCAGTTCCCAGGATGTATAGATGTGTCGGATCAGAAAGAAAGCTCTTCACTTTCGTTGTTATTGGGAGTAAGAAACCCTGAAAAGTGCGCAGTTGATGCAGAATCCAGTCAGTTTCCAAGATGTGTAGATGGGTCGGATCAGAAGGAAAGCTCCTCGCATTCCCTGTGCGCTTCGGTAGTAAGCGATGCTTCAGAAATGCTCGCAGCTAACACTGTAAAATCCAGTGGTGGAAGTGTGGCGGGTGCAAGTGGTAGCGGGAAATGCAAGAAACAAGGCTGCGAGGAGAAAGCCGGAGGAAAAACCATCTTCTGCAGGGCCCATGGCGGAGGCAAGAGGTGCTACTATCCTGGCTGTACAAAGAGCGCCGAAGAGCACACAGACTTCTGCTTAGCTCATATTAGTCGCCGCTGCATGCACGAGGGTTGTTTCCGGTTTGCACGCCGGAAAACTGACTTCTGCAGCAAGCATGGAGGCGGCAAAAAGGGTGAGACTGAGACCCATAAGAAGTCGTCCAGGAGTGCAGAATCTCGCTCTGGAGCCACCATCACTCACGTGAGTTCAGGTAAAAATTGCAAGTCTCCAGGATGCACAGGAACCGCAGACGGAGTCACCATGCTCTGCGAGAAGCATCGCATGAAAATGGCCTGCTCATTTCCAGGCTGCACCAAGATGGCATGGGGGCCGAGTGCACACTGTGTACGCCACGGAGCCGGCAAGAGATGTAAGTTTCTGGGCTGCACCAAGAGCACAAGGCGAAGCACCGATTTCTGCAAGACGCACGGTGGATCAGGAGGTGCAGATGATACTCTGTGCTCATGGCGAGGAGGGGAATCAAGCGTTGGTGGTGGCGAGGACAAGTGTGATAGAATTGCTCGGGGAAGGTCTGGTCTATGTGCAGCTCACAGCGCTCTTGTCCTGGACGACCGTGCTTCCTGCGATGGCACAATAGCCCCAGCAGCCGCCCAGCTGGTCCAGGCAGATGAACTCATCAAACCCGATGTGATAGAACACCCTGCCGTGGAGGCAGGTCGCGATGACAAAGCTGATGGTGGTGTTGGAGGATCAGGATCAGCAGCGGCTGTGGCTGACCAAAGACTAGATTTGAATGCCGAGGCGATTATTACACAACATTTCTTTGTTTGA
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| Protein seq | QTESSSLSLLLGVRNPGKCVVDTESNQFPGCIDVSDQKESSSLSLLLGVRNPEKCAVDAESSQFPRCVDGSDQKESSSHSLCASVVSDASEMLAANTVKSSGGSVAGASGSGKCKKQGCEEKAGGKTIFCRAHGGGKRCYYPGCTKSAEEHTDFCLAHISRRCMHEGCFRFARRKTDFCSKHGGGKKGETETHKKSSRSAESRSGATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKMACSFPGCTKMAWGPSAHCVRHGAGKRCKFLGCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGESSVGGGEDKCDRIARGRSGLCAAHSALVLDDRASCDGTIAPAAAQLVQADELIKPDVIEHPAVEAGRDDKADGGVGGSGSAAAVADQRLDLNAEAIITQHFFV |
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| Function | Probable WRKY transcription factor 19 [UniProtKB/Swiss-Prot:Q9SZ67] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0223400 | OsNip_11t0223400-01 | Chr11 | 6448155 | 6449526 | + | RAP2018-11-26 | ||
| CDS seq | CAGACGGAAAGCTCTTCACTTTCGTTGTTATTGGGAGTAAGAAACCCCGGAAAGTGCGTAGTTGATACAGAATCCAACCAGTTCCCAGGATGTATAGATGTGTCGGATCAGAAAGAAAGCTCTTCACTTTCGTTGTTATTGGGAGTAAGAAACCCTGAAAAGTGCGCAGTTGATGCAGAATCCAGTCAGTTTCCAAGATGTGTAGATGGGTCGGATCAGAAGGAAAGCTCCTCGCATTCCCTGTGCGCTTCGGTAGTAAGCGATGCTTCAGAAATGCTCGCAGCTAACACTGTAAAATCCAGTGGTGGAAGTGTGGCGGGTGCAAGTGGTAGCGGGAAATGCAAGAAACAAGGCTGCGAGGAGAAAGCCGGAGGAAAAACCATCTTCTGCAGGGCCCATGGCGGAGGCAAGAGGTGCTACTATCCTGGCTGTACAAAGAGCGCCGAAGAGCACACAGACTTCTGCTTAGCTCATATTAGTCGCCGCTGCATGCACGAGGGTTGTTTCCGGTTTGCACGCCGGAAAACTGACTTCTGCAGCAAGCATGGAGGCGGCAAAAAGGGTGAGACTGAGACCCATAAGAAGTCGTCCAGGAGTGCAGAATCTCGCTCTGGAGCCACCATCACTCACGTGAGTTCAGGTAAAAATTGCAAGTCTCCAGGATGCACAGGAACCGCAGACGGAGTCACCATGCTCTGCGAGAAGCATCGCATGAAAATGGCCTGCTCATTTCCAGGCTGCACCAAGATGGCATGGGGGCCGAGTGCACACTGTGTACGCCACGGAGCCGGCAAGAGATGTAAGTTTCTGGGCTGCACCAAGAGCACAAGGCGAAGCACCGATTTCTGCAAGACGCACGGTGGATCAGGAGGTGCAGATGATACTCTGTGCTCATGGCGAGGAGGGGAATCAAGCGTTGGTGGTGGCGAGGACAAGTGTGATAGAATTGCTCGGGGAAGGTCTGGTCTATGTGCAGCTCACAGCGCTCTTGTCCTGGACGACCGTGCTTCCTGCGATGGCACAATAGCCCCAGCAGCCGCCCAGCTGGTCCAGGCAGATGAACTCATCAAACCCGATGTGATAGAACACCCTGCCGTGGAGGCAGGTCGCGATGACAAAGCTGATGGTGGTGTTGGAGGATCAGGATCAGCAGCGGCTGTGGCTGACCAAAGACTAGATTTGAATGCCGAGGCGATTATTACACAACATTTCTTTGTTTGA
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| Protein seq | QTESSSLSLLLGVRNPGKCVVDTESNQFPGCIDVSDQKESSSLSLLLGVRNPEKCAVDAESSQFPRCVDGSDQKESSSHSLCASVVSDASEMLAANTVKSSGGSVAGASGSGKCKKQGCEEKAGGKTIFCRAHGGGKRCYYPGCTKSAEEHTDFCLAHISRRCMHEGCFRFARRKTDFCSKHGGGKKGETETHKKSSRSAESRSGATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKMACSFPGCTKMAWGPSAHCVRHGAGKRCKFLGCTKSTRRSTDFCKTHGGSGGADDTLCSWRGGESSVGGGEDKCDRIARGRSGLCAAHSALVLDDRASCDGTIAPAAAQLVQADELIKPDVIEHPAVEAGRDDKADGGVGGSGSAAAVADQRLDLNAEAIITQHFFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.889736 | 2.959713 | 1.084432 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11580 | RBH | 1.219142 | 1.126729 | 0.523316 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0223400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007780 | SBH | 0.586193 | 4.042774 | 1.698145 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007680 | RBH | 0.728379 | 4.617134 | 2.073140 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0000170 | RBH | 0.478864 | 0.148254 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007670 | RBH | 4.611819 | 5.378192 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
