Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0211650 | OGI:11017430 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:5799558-5802020 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGATAGGTTCAAATTGATGCAGTTCCGTTAGAAACCCCAGGCACTGTGATAAACTTCGGGTACAAGAGCAATTTGAGAAATCGAGATGCACCAGTTTATTAAGCTTGCCAAACGACTCGGGCAGTTCTCGTATTCCTGAACAATTTGACTCTGGCAGTGCCACGATTTCATAAGACCCACGAAGGCTGAGGTACATTAATTTTATGAGCTTGCTGATGCAATTAAGGATCGTTTGATATTGGATCCCAGGGGCATTAAGATACCTCAGCTGCTTCAATTGACCAATATAATCTGGTAACTTTTGTATAGAGCAATCACTCAAATCCAAGACACGCAAAGACTTGCCAGAAGAAAATGCACCATCACTAAGACGGAATTCCCTACAGTTCGTAAAGCACAAAGCCCGTATCTTTGCTAGGTAACCTGTGGATGACTCCAATGGCTTGAAGCAATTACTGAGCAGTGCATAATGGTAACTGATTCCACCAGAGTTGTCTTGTTTGTTATCTAGTAAAATTTCATCGACCATTACCAATCTTGCTATATCATGCACTAAGTCATGCATGGTGAATAGAGTGACATCTTCATGATACAGTCCAGCAGTCTGCAAGAAACATCAGTTAGCAGCATGAAGATTTTATATTGGAATAAATAAATTGATTCCCCACCCCCTTAACTGATGGAAAGGGAGGGTGTGGGCAAGCTCATCAAATGTACTCACCAGAGGTGATTTTGAGAGTTGAAGGAAGGACAGTCCCAAGAGCTGCTTGATGTATCTCTCACTGAGCTGCCTAGTCGAGAATATGTTTGATTCCTCAATGAAACCCAAAGAAACCCATTGGTGGATCAGAGCATTTTTTACTATGTTATGACCTTTCGGAAAAATTAAAGTATATAGTTTAGAACTAATTAAAATTCGGAATTAAAAATTAGGAAAATTAAAAATAGAAGTCAGAGTCCACATCAAAATATAATTTACAATAACTAAAATTCAAATTAAGAAAAGCAAGATTGGGAGAAGAGTCTAGAGTCCATATAGGAATAAAATTTATAAATAACTAAAATTCAGAATTAAAAAATAAGAAATATTAGACAAAAAAAAAATCTAGAGTCCATATAGGAATACAATTTATAAATAACTAAAATTCAAAATTAAAAAAAAATACAAAGTATTGAAAAATGAAGTTAGAGTCCATATATAAATACAATTAGAAATAATGTATTGGGAATTAGAAAAATAGAAATATTGAAATAAGAGTCTAGAGTACATATAGGAATATAGAACTAACTTAAAGTCAGAATTAAAAAATAAGAAAAATTAAAAATAGAGTTAAGATTCCATATATAAATACAATATAGAACAACAAAATACAAAATTTAAAAAATAAGCAAGATTGGGAGAAGAGTCTAGCGTCCATATAGAAATGCAATTTATAAATATCTGAAATTAGGAATTAACAAATAAGGAATATTGAAAAAATAATCTAGAGTCCATATAGAATAAAATTTATAAATAACTAAAATTTAAAAAATTAGAAATATTGGAAACAAATCTAGAGTCCATATAGGAATCCAATTTAACAATAACGGAAATTCAAAATTATAAAATAAGGAATGTTGAAAGAAGAGTTTAAAGTACATATAGAAACACAATTTACAAATAACTAAAATTCGGAATTAAGAAAATTGAATATGTGAAGAAGTGTCCAGAGTTCATATAGGAATAAAATTTATCAATAATAAAATTCGGAATTAAATAATTAAAAATATTGAAAGATGAGTCTAAAGTCCATATAGAAATACAATCTATAAATAACTAAAATTTGAAATTAAAATAATTAATAACTATTACGTATATACAATACAATATGAATATCACACAGTTGTTAGTTTGATCAAGAATTTAAATTATGTTGCCATTTTAATGTATTTAAGAAAATGTGAATATATTTAAGCTATTATATGAGAAAAATATAACGGTGCTAGCCGCGCAATTTGCGCGGGCCACCATGCTAGTTTAATCTAAAGTAAAGTAAAGCAAGCGAGTGGCACCCCTCTCCATTACGTTTTCATTTGGGTACTGTAGTAATGTAGTTCACCTGAGTACGGACTACGGAGTACCTATCTGTGAGAAAATCTGCTTTCCCAGATCTGCCGCCATGGCCGACGGACGGCGTCGAAGGCTTCGAGTAGGAAACGTTGGATGTGGCCTAGAAGGAGCACCTGGAGGCTGGAGGAGCGACACCAAGCACACCATCCACCTCGAGGGGCGGCGTCCATTGACCGCCGGGAGGAGGGTAAGGCCGAAGACCTGCGTCCTACGATGAGGAACCCGACACCGGCGACCACCACCGGTGGCAACCCAGACCCAGAGCCAGAGGTAGGATATGGGAGGAACAGGGGATGGGGAGACCGGGAGAGGGGCTGGATCAGCGGCTCTCGCTTCACCCCCGAGGCCCAT
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| CDS seq | ATGGGCCTCGGGGGTGAAGCGAGAGCCGCTGATCCAGCCCCTCTCCCGGTCTCCCCATCCCCTGTTCCTCCCATATCCTACCTCTGGCTCTGGGTCTGGGTTGCCACCGGTGGTGGTCGCCGGTGTCGGGTTCCTCATCGTAGGACGCAGGTCTTCGGCCTTACCCTCCTCCCGGCGGTCAATGGACGCCGCCCCTCGAGGTGGATGGTGTGCTTGGTGTCGCTCCTCCAGCCTCCAGGTGCTCCTTCTAGGCCACATCCAACGTTTCCTACTCGAAGCCTTCGACGCCGTCCGTCGGCCATGGCGGCAGATCTGGGAAAGCAGATTTTCTCACAGATAGGTCATAACATAGTAAAAAATGCTCTGATCCACCAATGGGTTTCTTTGGGTTTCATTGAGGAATCAAACATATTCTCGACTAGGCAGCTCAGTGAGAGATACATCAAGCAGCTCTTGGGACTGTCCTTCCTTCAACTCTCAAAATCACCTCTGACTGCTGGACTGTATCATGAAGATGTCACTCTATTCACCATGCATGACTTAGTGCATGATATAGCAAGATTGGTAATGGTCGATGAAATTTTACTAGATAACAAACAAGACAACTCTGGTGGAATCAGTTACCATTATGCACTGCTCAGTAATTGCTTCAAGCCATTGGAGTCATCCACAGGTTACCTAGCAAAGATACGGGCTTTGTGCTTTACGAACTGTAGGGAATTCCGTCTTAGTGATGGTGCATTTTCTTCTGGCAAGTCTTTGCGTGTCTTGGATTTGAGTGATTGCTCTATACAAAAGTTACCAGATTATATTGGTCAATTGAAGCAGCTGAGGTATCTTAATGCCCCTGGGATCCAATATCAAACGATCCTTAATTGCATCAGCAAGCTCATAAAATTAATGTACCTCAGCCTTCGTGGGTCTTATGAAATCGTGGCACTGCCAGAGTCAAATTGTTCAGGAATACGAGAACTGCCCGAGTCGTTTGGCAAGCTTAATAAACTGGTGCATCTCGATTTCTCAAATTGCTCTTGTACCCGAAGTTTATCACAGTGCCTGGGGTTTCTAACGGAACTGCATCAATTTGAACCTATCTAG
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| Protein seq | MGLGGEARAADPAPLPVSPSPVPPISYLWLWVWVATGGGRRCRVPHRRTQVFGLTLLPAVNGRRPSRWMVCLVSLLQPPGAPSRPHPTFPTRSLRRRPSAMAADLGKQIFSQIGHNIVKNALIHQWVSLGFIEESNIFSTRQLSERYIKQLLGLSFLQLSKSPLTAGLYHEDVTLFTMHDLVHDIARLVMVDEILLDNKQDNSGGISYHYALLSNCFKPLESSTGYLAKIRALCFTNCREFRLSDGAFSSGKSLRVLDLSDCSIQKLPDYIGQLKQLRYLNAPGIQYQTILNCISKLIKLMYLSLRGSYEIVALPESNCSGIRELPESFGKLNKLVHLDFSNCSCTRSLSQCLGFLTELHQFEPI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0211650 | OsNip_11t0211650-00 | Chr11 | 5799558 | 5802020 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGCCTCGGGGGTGAAGCGAGAGCCGCTGATCCAGCCCCTCTCCCGGTCTCCCCATCCCCTGTTCCTCCCATATCCTACCTCTGGCTCTGGGTCTGGGTTGCCACCGGTGGTGGTCGCCGGTGTCGGGTTCCTCATCGTAGGACGCAGGTCTTCGGCCTTACCCTCCTCCCGGCGGTCAATGGACGCCGCCCCTCGAGGTGGATGGTGTGCTTGGTGTCGCTCCTCCAGCCTCCAGGTGCTCCTTCTAGGCCACATCCAACGTTTCCTACTCGAAGCCTTCGACGCCGTCCGTCGGCCATGGCGGCAGATCTGGGAAAGCAGATTTTCTCACAGATAGGTCATAACATAGTAAAAAATGCTCTGATCCACCAATGGGTTTCTTTGGGTTTCATTGAGGAATCAAACATATTCTCGACTAGGCAGCTCAGTGAGAGATACATCAAGCAGCTCTTGGGACTGTCCTTCCTTCAACTCTCAAAATCACCTCTGACTGCTGGACTGTATCATGAAGATGTCACTCTATTCACCATGCATGACTTAGTGCATGATATAGCAAGATTGGTAATGGTCGATGAAATTTTACTAGATAACAAACAAGACAACTCTGGTGGAATCAGTTACCATTATGCACTGCTCAGTAATTGCTTCAAGCCATTGGAGTCATCCACAGGTTACCTAGCAAAGATACGGGCTTTGTGCTTTACGAACTGTAGGGAATTCCGTCTTAGTGATGGTGCATTTTCTTCTGGCAAGTCTTTGCGTGTCTTGGATTTGAGTGATTGCTCTATACAAAAGTTACCAGATTATATTGGTCAATTGAAGCAGCTGAGGTATCTTAATGCCCCTGGGATCCAATATCAAACGATCCTTAATTGCATCAGCAAGCTCATAAAATTAATGTACCTCAGCCTTCGTGGGTCTTATGAAATCGTGGCACTGCCAGAGTCAAATTGTTCAGGAATACGAGAACTGCCCGAGTCGTTTGGCAAGCTTAATAAACTGGTGCATCTCGATTTCTCAAATTGCTCTTGTACCCGAAGTTTATCACAGTGCCTGGGGTTTCTAACGGAACTGCATCAATTTGAACCTATCTAG
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| Protein seq | MGLGGEARAADPAPLPVSPSPVPPISYLWLWVWVATGGGRRCRVPHRRTQVFGLTLLPAVNGRRPSRWMVCLVSLLQPPGAPSRPHPTFPTRSLRRRPSAMAADLGKQIFSQIGHNIVKNALIHQWVSLGFIEESNIFSTRQLSERYIKQLLGLSFLQLSKSPLTAGLYHEDVTLFTMHDLVHDIARLVMVDEILLDNKQDNSGGISYHYALLSNCFKPLESSTGYLAKIRALCFTNCREFRLSDGAFSSGKSLRVLDLSDCSIQKLPDYIGQLKQLRYLNAPGIQYQTILNCISKLIKLMYLSLRGSYEIVALPESNCSGIRELPESFGKLNKLVHLDFSNCSCTRSLSQCLGFLTELHQFEPI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0211300 | SBH | 0.155660 | 0.167033 | 0.395528 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10570 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0211650 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007060 | SBH | 0.0 | 0.993930 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007080 | SBH | 0.030859 | 0.135391 | 0.760307 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006950 | SBH | 0.0 | 0.0 | 0.376646 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006970 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007120 | SBH | 5.265685 | 12.773895 | 6.666517 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0092700 | SBH | 0.535219 | 12.828787 | 12.050672 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007110 | SBH | 0.170104 | 0.251311 | 0.873241 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0097600 | SBH | 5.716607 | 4.247566 | 0.013242 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007000 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007130 | SBH | 0.560330 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006970 | SBH | 1.186617 | 7.702504 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007010 | SBH | 0.210385 | 0.0 | 0.077995 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007110 | SBH | 0.280194 | 5.345597 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007100 | SBH | 0.460362 | 1.547215 | 1.200840 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006960 | SBH | 8.103274 | 3.715226 | 0.147946 |
