Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0175300 | OGI:11011770 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:3737109-3739034 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAAAAGACATTCCAATATATCATGATCATGTTGTACATGTAGAGCAGACATGACAGTTTAGATAAGCCTTAATTTCTATCAGCAACAATTTCTTCCTCATACTCATTGGGAGCCCCATAAGGGCTTTGAATAGACGGCCATTGTCACGACAAAGAATGCTATAAGCTGTTAGCAAATCATCACAATCCAACCCAGGTATCTCTTCAAGTGCTACCAAGATCTCCCCAGGAGAAGCCATTAACACATACAGACTTTGGGGAGATGACTCGGATGGCAAAGATTGCGACAAATTAGTGCCAGTTCCGGTTGCAGTTGGTGTTGCAATTGGTATCTTGTCGACCATCGCTGGCAACATTGTCGTGGCTTTGCTATAACTCACATAGGTAGCAAAGCAGTCAGGGATTTTGACAGGAATACAAGTGTATCCATGTGGCTGTCGCCAATGGCACCGACCGTCGCCGCGCCAAACCGACACTAGTGCCTTGCTCCTTGTATCCATCATGATCTTCCATACCACCTCTTCGGCGACGTAATGTGCACCCCGTTTGCGTTCTTCGTCCACAATGAGGCAGACGAGATTTGGATCATCCATGCTCACTATGGGGTGTAGTGGAAAGCTCCGTGGGAGGGCGGAGTAGGCGTCGAGGGACCAAGCTCGGCGGCGTCGATCATGGCGTCCATGGTCCACGCCATGTCGTCGTCGCCGTCGCCGTCGATCCTCAGTGTCCAGGTTCTGATGACGAAGGCGCGGCTCGAACGGTCGCAGGTGGTGTGCTTGCCCAGGCTGCCGCAGCAGCAGCGGGAGGAGATGTCGACGAATTTGAGCGCGGCGCCGCCGCCGTCGATGGCGCAGACGACGGTTCGAGTGTTGAGCAGACAACGCCGATAGTTGTCGCCCTGGCGGTCGAAGTGCTCCTCGTCGAACGCGCCGGCGGGGGCCTCCACGGGGAGCGACACGTACTGCAGCCGCGGGGGAATTTCGTCGAACAGGTCGTCGCCGCAGAGGATGACGCCGCGGTACAGGTCGACGTAGCACAGCAGCCGGTCGCCGACGGGGACGGCCATGTCGGTCTCCCAGTAGGAGAGCTCCTCGCCCTTGCCGTCGTCGTGGACGATCGGCGCGATCGGCGTGGCGCTCCACTCGCCGGAGCGGAGCACGACGAGCTCGGCGCCCTCCAGCGTGTCGCGCCTGCGGTACTCCTCGGTGAGGAGCGCCGCCACCACGAGCTCGTCGTCGTCGTCGTCGCCGCAGCGGCGCACGAGGAGGCCGGTGCTACCTCCACGCAGCCGGGGCGGCTTGGTATTGGTACCCTGATAAGTCGGGAGAGCGACAACGACGGCGGCCGCCGTGGTGGGTCCTCGTCGCCGTCGCCGGCATTGTAGAAGAAGTAATCGATCCCGTATTGTTGGTACCCTTCCTTCTGGTAATGCATCTCGAGGAGCACGGAGTCGCCGTGGGCAGCGACGACGTACATCGAGGGCCGGTAATGATGAGCTCCGTATCCGGAGCCGCCGCACGGTGAGCAGTGGAAGCTTAGCCCCGACGCCGCCGGTGGCGACTCGAGGCGGAGGGAGACGCGGACGAGATGGCCGGACGAGGAGCGGGAGGCCGCCCCGGTGATCTTGGCTCCACCGGAGTTGGAGGTGGAGTACTCCGAGTCGTCGACCTCGCGTTCGGCCGTGGCGTAGGGCATGAGCATCACCCACCCTGGGTAGCCTCTGGCCGCCGCCGCCGCCGCCGGCGGCGGAACGCCGGAAGGCAGCGTCGCCGTCGCCGTCGCAACCGGCCGTAGGGTTTCCATGAGCGGCGCCGCGAGCCGATCGATCGGAGTTTTGGAGATCACGTGTTTATTTACGTATGGGTACAAAAACCTAGATGAGTTTATTTGGAATACTTACCGCCTCACCGGCAAGCCACCCCCCCCC
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| CDS seq | ACACGTGATCTCCAAAACTCCGATCGATCGGCTCGCGGCGCCGCTCATGGAAACCCTACGGCCGGTTGCGACGGCGACGGCGACGCTGCCTTCCGGCGTTCCGCCGCCGGCGGCGGCGGCGGCGGCCAGAGGCTACCCAGGGTGGGTGATGCTCATGCCCTACGCCACGGCCGAACGCGAGGTCGACGACTCGGAGTACTCCACCTCCAACTCCGGTGGAGCCAAGATCACCGGGGCGGCCTCCCGCTCCTCGTCCGGCCATCTCGTCCGCGTCTCCCTCCGCCTCGAGTCGCCACCGGCGGCGTCGGGGCTAAGCTTCCACTGCTCACCGTGCGGCGGCTCCGGATACGGAGCTCATCATTACCGGCCCTCGATGTACGTCGTCGCTGCCCACGGCGACTCCGTGCTCCTCGAGATGCATTACCAGAAGGAAGGGTACCAACAATACGGGATCGATTACTTCTTCTACAATGCCGGCGACGGCGACGAGGACCCACCACGGCGGCCGCCGTCGTTGTCGCTCTCCCGACTTATCAGGGTACCAATACCAAGCCGCCCCGGCTGCGTGGAGGTAGCACCGGCCTCCTCGTGCGCCGCTGCGGCGACGACGACGACGACGAGCTCGTGGTGGCGGCGCTCCTCACCGAGGAGTACCGCAGGCGCGACACGCTGGAGGGCGCCGAGCTCGTCGTGCTCCGCTCCGGCGAGTGGAGCGCCACGCCGATCGCGCCGATCGTCCACGACGACGGCAAGGGCGAGGAGCTCTCCTACTGGGAGACCGACATGGCCGTCCCCGTCGGCGACCGGCTGCTGTGCTACGTCGACCTGTACCGCGGCGTCATCCTCTGCGGCGACGACCTGTTCGACGAAATTCCCCCGCGGCTGCAGTACGTGTCGCTCCCCGTGGAGGCCCCCGCCGGCGCGTTCGACGAGGAGCACTTCGACCGCCAGGGCGACAACTATCGGCGTTGTCTGCTCAACACTCGAACCGTCGTCTGCGCCATCGACGGCGGCGGCGCCGCGCTCAAATTCGTCGACATCTCCTCCCGCTGCTGCTGCGGCAGCCTGGGCAAGCACACCACCTGCGACCGTTCGAGCCGCGCCTTCGTCATCAGAACCTGGACACTGAGGATCGACGGCGACGGCGACGACGACATGGCGTGGACCATGGACGCCATGATCGACGCCGCCGAGCTTGGTCCCTCGACGCCTACTCCGCCCTCCCACGGAGCTTTCCACTACACCCCATAG
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| Protein seq | TRDLQNSDRSARGAAHGNPTAGCDGDGDAAFRRSAAGGGGGGQRLPRVGDAHALRHGRTRGRRLGVLHLQLRWSQDHRGGLPLLVRPSRPRLPPPRVATGGVGAKLPLLTVRRLRIRSSSLPALDVRRRCPRRLRAPRDALPEGRVPTIRDRLLLLQCRRRRRGPTTAAAVVVALPTYQGTNTKPPRLRGGSTGLLVRRCGDDDDDELVVAALLTEEYRRRDTLEGAELVVLRSGEWSATPIAPIVHDDGKGEELSYWETDMAVPVGDRLLCYVDLYRGVILCGDDLFDEIPPRLQYVSLPVEAPAGAFDEEHFDRQGDNYRRCLLNTRTVVCAIDGGGAALKFVDISSRCCCGSLGKHTTCDRSSRAFVIRTWTLRIDGDGDDDMAWTMDAMIDAAELGPSTPTPPSHGAFHYTP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0175300 | OsNip_11t0175300-01 | Chr11 | 3737109 | 3739034 | - | RAP2018-11-26 | ||
| CDS seq | ACACGTGATCTCCAAAACTCCGATCGATCGGCTCGCGGCGCCGCTCATGGAAACCCTACGGCCGGTTGCGACGGCGACGGCGACGCTGCCTTCCGGCGTTCCGCCGCCGGCGGCGGCGGCGGCGGCCAGAGGCTACCCAGGGTGGGTGATGCTCATGCCCTACGCCACGGCCGAACGCGAGGTCGACGACTCGGAGTACTCCACCTCCAACTCCGGTGGAGCCAAGATCACCGGGGCGGCCTCCCGCTCCTCGTCCGGCCATCTCGTCCGCGTCTCCCTCCGCCTCGAGTCGCCACCGGCGGCGTCGGGGCTAAGCTTCCACTGCTCACCGTGCGGCGGCTCCGGATACGGAGCTCATCATTACCGGCCCTCGATGTACGTCGTCGCTGCCCACGGCGACTCCGTGCTCCTCGAGATGCATTACCAGAAGGAAGGGTACCAACAATACGGGATCGATTACTTCTTCTACAATGCCGGCGACGGCGACGAGGACCCACCACGGCGGCCGCCGTCGTTGTCGCTCTCCCGACTTATCAGGGTACCAATACCAAGCCGCCCCGGCTGCGTGGAGGTAGCACCGGCCTCCTCGTGCGCCGCTGCGGCGACGACGACGACGACGAGCTCGTGGTGGCGGCGCTCCTCACCGAGGAGTACCGCAGGCGCGACACGCTGGAGGGCGCCGAGCTCGTCGTGCTCCGCTCCGGCGAGTGGAGCGCCACGCCGATCGCGCCGATCGTCCACGACGACGGCAAGGGCGAGGAGCTCTCCTACTGGGAGACCGACATGGCCGTCCCCGTCGGCGACCGGCTGCTGTGCTACGTCGACCTGTACCGCGGCGTCATCCTCTGCGGCGACGACCTGTTCGACGAAATTCCCCCGCGGCTGCAGTACGTGTCGCTCCCCGTGGAGGCCCCCGCCGGCGCGTTCGACGAGGAGCACTTCGACCGCCAGGGCGACAACTATCGGCGTTGTCTGCTCAACACTCGAACCGTCGTCTGCGCCATCGACGGCGGCGGCGCCGCGCTCAAATTCGTCGACATCTCCTCCCGCTGCTGCTGCGGCAGCCTGGGCAAGCACACCACCTGCGACCGTTCGAGCCGCGCCTTCGTCATCAGAACCTGGACACTGAGGATCGACGGCGACGGCGACGACGACATGGCGTGGACCATGGACGCCATGATCGACGCCGCCGAGCTTGGTCCCTCGACGCCTACTCCGCCCTCCCACGGAGCTTTCCACTACACCCCATAG
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| Protein seq | TRDLQNSDRSARGAAHGNPTAGCDGDGDAAFRRSAAGGGGGGQRLPRVGDAHALRHGRTRGRRLGVLHLQLRWSQDHRGGLPLLVRPSRPRLPPPRVATGGVGAKLPLLTVRRLRIRSSSLPALDVRRRCPRRLRAPRDALPEGRVPTIRDRLLLLQCRRRRRGPTTAAAVVVALPTYQGTNTKPPRLRGGSTGLLVRRCGDDDDDELVVAALLTEEYRRRDTLEGAELVVLRSGEWSATPIAPIVHDDGKGEELSYWETDMAVPVGDRLLCYVDLYRGVILCGDDLFDEIPPRLQYVSLPVEAPAGAFDEEHFDRQGDNYRRCLLNTRTVVCAIDGGGAALKFVDISSRCCCGSLGKHTTCDRSSRAFVIRTWTLRIDGDGDDDMAWTMDAMIDAAELGPSTPTPPSHGAFHYTP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g07420 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0175300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005040 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0005050 | SBH | 0.0 | 0.489210 | 1.074896 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005080 | SBH | 0.567073 | 5.334622 | 6.845130 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004960 | SBH | 0.076125 | 0.381330 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004860 | SBH | 1.525462 | 4.994469 | 4.876641 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0062500 | SBH | 0.0135205 | 0.006899 | 0.000687 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004940 | SBH | 0.359839 | 0.758768 | 1.000156 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0062800 | SBH | 0.042308 | 0 | 0.001579 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004890 | SBH | 0.053456 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004990 | SBH | 0.075547 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005000 | SBH | 0.000000 | 8.079351 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004970 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004980 | SBH | 0.100825 | 2.968347 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004970 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004890 | RBH | 0.0 | 0.0 | 0.0 |
