Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0004980 | OGI:11011850 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:3801072-3808513 | ||||||||
| Gene Symbol | NIN6, OsNIN6, INV6, OsINV6 | ||||||||||
| DNA seq | ctatggggtgtagtggaaagctccgtgggagggcggcgtaggcgtcgagggactaagctcggcggcgtcgatcatggcgtccatggtccacgccatgtcgtcgtcgccgtcgccgtcgatcctcagtgtccaggttctgatgacgaaggcgcggctcgaacggtcgcaggtggtgtgcttgcccaggctgccgcagcagcagcgggaggagatgtcgacgaatttgagcgcggcgccgccgccgtcgatggcgcagacgacggttcgagtgttgagcagacaacgccgatagttgtcgccctggcggtcgaagtgctcctcgtcgaacgcgccggcgggggcctccacggggagcgacacgtactgcagccgcgggggaatttcgtcgaacaggtcgtcgccgcagaggatgacgccgcggtacaggtcgacgtagcacagcagccggtcgccgacgggaacggccatgtcggtctcccagtaggagagctcctcgcccttgccgtcgtcgtggacgatcggcgcgatcggcgtggcgctccactcgccggagcggagcacgacgagctcggcgccctccagcgtgtcgcgcctgcggtactcctcggtgaggagcgccgccaccacgagctcgtcgtcgtcgtcgtcgccgcagcggcgcacgaggaggccggtgctacctccacgcagccggggcggcttggtattggtaccctgataagtcgggagagcgacaacgacggcggccgccgtggtgggtcctcgtcgccgtcgccggcattgtagaagaagtaatcgatcccgtattgttggtaccctttgtagaaaaatctaaattgttgtattatggtattttctgatctattacatcgaccctctcatggggtatatataggagtacataggagatagagacttggagtacaatacAaaATAAGAGTAGATTTATCTCTAGGATTCTATCTCTAGGACTATATCTTATCTCTAGGATTCTATCTCTAGGATATATCTTATCTCTATATTTGTATTTGATTCttatctctaactaacatatttatacttctaacattccccctcagtcgtaacgggagcgaagcgaacgattgcgactggatttgaaatcttctatttcttcatctttctttgactcaccatcatcaattgcatctctgatggacggtcctccacctggtgcctgcgtccccttctgtgtcgtcccttgactctcccgtcgatgtagccaatcatggagtagccgtggtcatggtaatcatggtagttgatgtagccgcaaatagccgaaggcgaaaaaaatatttacgccatggtgtgaagacaaaaaactgtaattgttagcatcttacatcttgtagatgtcagaggatgccattggggacgtcttgcatatgtcagaggacgtcgttggcgatgaggccaccacatcggttggtccttccgcgccatgtagcggtcatcacaatggtgatgccagattgatgcagtcgttgtcgtcgtagatgacgtgatcgatgccgtcgtcggtgtcgcggtcgttgccgtcgtagaggacgcggtcgatgtcgtcgaataagcgtcttgcagattaatctgtcagaggacgcgaggtgtccatctatgtggacgagtcggcggcggcatgttactacgttgatgaagaccatcggatcggagtcgatgtagtcgtacaactgatgatgagtgttgtccgtgtagatccgaagacatgtgttggtggagggagtcgatctcggcgaccaccggtcgccggccgccacaaattcatgcgtgtgaattctcctcgggctcgattcaccgcgctgctgcttgccctcgggctcggtttctctgattcttgctgcttgatctgatgcttgaatagttgctgcttgatctgaggctggtcgtttgctgcttccgctcacgaggatcgcttttatgtggctaatgaagaaactaatctaatctaatgctaattaataaaattggcggctgattaggcacttgcttcttcggctaatgattgaagaggctagctaatggcgttgccccagggagagcttatggattcctctcgtctccctggggcagcgcgaaggatcggtcgacgctaggctatgactctgataccatgtagaaaaatctaaattgttgtattatggtatttttttatctattacatcgatcctcttatcgggtatatataggagtacataggagatagagacttggagtacaatacaaataagagtagatttatctctaggattctatctctaggactatatcttatctctaggattctatctctagaatatatcttatctctttatttatttgtatttgattcttatctctaactaacatatttatacttctaacacccttccttctggtaatgcatctcgaggagcacggagtcgccgtgggcagcgacgacgtacatcgagggccggtaatgatgagctccgtatccggagccgccgcacggtgagcagtggaagcttagccccgacgccgccggtggcgcctcgaggcggagggagacgcggacgagatgaccggacgaggagcgggaggccgccccggtgatcttggctccaccggagttggaggtggagtactccgagtcgtcgacctcgcgttcggccgtggcgtagggcatgagcatcacccaccctgggtagcgctctggccgccgccgccggcggaacgccggaaggcagcgtcgccgtcgccgtcgcaaccggccgtagggtttccatgagcggcgccgcgagccgatcgatcggagttttggagatcacgtgtttatttacgtatgggtacaaaaacctagatgagtttatttggaatacttaccgcctcaccggcaagccccccccccccccctccccgcgggagataggaaattagttcggctaaaaattttggatttttttctttttttgaatttagcaaaattattcaaattgaaccatattttatttaaatttcaaattatttcggaccgaatttttccgtcgtatcggtgccctccgatagaaagtgccggtgcgatatatcgaaccctgctccccggccggttcctctagtcctgtcctatcagaaatctgatatatatccttgattttaaatttcaagaagttttgaaaccttccgtttgtttagactataaaatattttggatttttttactgtttgccaccagtatattaccctatttcccaaccgacgatcttgtcgttgttttttttttctttttactgaattactgaatgccgtaatgccacttatttcttattgtatttctcaatctgcaactaaaagtgtaataatattgaaagtaaatgcacagatttttttttctaaaattttcaatggtatttgttaattggtgtgtgcacaaaagacttatgttcacaggatatcgtaaacgtcaatggcgccacaatcatacaaaagtccttggtgtttccttccacaatgaaaatatgtgaggagtatattaacagaaagtcctacaaagtactacaaagaattatccatcacagaaacatatgctagtacatatgtcaagacaaaactgtttaattattgcaaaaatgtttcaccaacaaaaaCTTcttctctgttggattgatgaagccagatacgaaaagttggacaaaattgctctgaaacgacttggatctatcgtatacacttctgtcctaactgacagtacagttacagtaaattttgaaccccattttcatgtttggacaaaactcctataagtttccacattgaacctctctttgggAaaaaaaaaattctatcaaaacatttcaggcattccatgatgccgaccgtcgcatggtcggcttcaccggccggtcttcctccatggagatcatcatcagcgtcgacgggtcctccagcatcatacgggctacgaggtagccagcgatggaccatgtctggaacttcctggcctgcttgccgatgaaccgtcccagcttgccatcgtagtactctggccagccgtccttcagaagcctggactcggcgagctcaatggcgcgcttcgccatctgcggacgcccagtcttgatgcaggctgctgtcagcagccacaggagaactgcagatgggagaacacacacataaacgttaagatcttggaatgaggattcaggtgactttggttgtgaacatcagaatcacatttcgccaactatctagggaacacgaagatcggatcaactttaggaaaaaaaaaagtgccacactcaaccctcaaagggatctgtcggttctgttcaaTttgatgaaaacagatgaagtcaaaatttcatagccataagcaccttagctacccccaaaaagttagtttttacagcttctgtatgacattaaggatcttacagtataagacttgattaataaaaattattagatcaacaaagtcattatcagaagaggtgaatgttgaatagtattatgtgatcgatttcagaataaactttagtttacctatttattattgtgtgtgatgaattgacatctaagctatcagccataatattggacatgactaatttttatgaagagtaatgcatagtaaggatcagcaacagaatcatctcaagttagcacagtgcaaaaggaaaactttaacctggccatgatcctccattgtgATaactccaCcgggtgttcttcgggtcgcagccagtgattattctccattcatggttctcaattgcagggtaacatatcttcagaggcatctcaccaactagctcttcccaccgctcctcaatcagatccattattgccactgattgctctggagtagccagagatgATataatggcaatgcaatttccaagggcaaaccaccgaaagtccatcatagctgggctcacgttgccaaggaagtagcctccccggcatggcatgaaatcaaacacccaatcagggattgaatccgggatgacattgaatttgttcacagcagtgtgtgaatactcttctgttttatatctgtatatgttattcaggtgtgggaaatctagccagaagtaattcctcatgtggtaggttagagcatgtagccgttgccctatcttttctatgaaatccttcccttcaccatctggcttaagcatctgcagagcacatctcaacgccatgtagaatagagcttggatctcaataggATaaccatatataccctggaaataatagtagatttaacatttgagccaaacagtcatgtaatgataaggatctcaatcaccaattataaaattgtagttcaaaaagtagaacttctaggaatgagATTatagtatTAtactactacaaatgcctgttagcactattatccatttttaagtaaattcaaattacgtagtatctctttcagagaaggttaagaagacaacgcttatacttgaaacttggaataacaatgcagtgctcccggacattgtgctttgaatatcagatttctgcccgttttattaaaaaaatgttttgaaaaaacagaacttgcttggttctaagaagaaaaagcagaaacattcagcttctttgttgccacatcaactgaactgtactgtttttaatgatacatgtcaagaaataaatcaaatcaaggtgaaagctcataccattcgacgatctatcattgagcagccatctgtgcagagcagagttgggaaggtatcaaatccctcagataagcataggttcagtatcagcctcatgcagttctgacactctggtgattctgccaaactagtatctgccgtatactttgtatatgcccggagtagaataatccaccaaaatccagagtccactggagccaccctcccaattgcactctcaccaaaatctgcaactaaagtttcagtgtttctgttccgattacgatccaccttgaaacttgcaggcatcgctcctgctccaagcttgaaacggtctaccattttctccgagctttgcaggtggagtgttttcaagaggaagtttttcactatatcagtctcattattcattagaaaggccaatgcacttggaaaaaaatctcgcacaaaaacctgccattgtaaggataacatcaggaaagaggtgaagcataattgaactattcatttgattcagggggaaaaaaacattgaaaaaacaagcatgcagaagaatcctagctagaaagcaagcaaagttttcaaagccatactgcttagataatcaaactgaacaggtcatcataagtgctagtaaaacaaacgaatttgctctgcaggactccatgccagtgatgatggatatagttaccatttaacagcctacataatatattcagtaaagctattatattgctcgataatcgacataatcataTatatcaacatcaaacaaaggctaagcatcaaacactacaaagatcctaaacacaccagattactcaggtactgatttcaacatgtataaaccaaacattcaatacatcatacaacaagaacataaaaacgagattcagttttcagaaaccatatgaacaagcagaggattccgatttcacctgatcataattgagcacctcctcggacgcatggtcgacggcggcaatcgtcccaaccggctgcccccggaagtacaccacggacttcctgagagcctcccacgcctcgttcacgagcgggtggggatcaccgagcgtccccagcgagaagggcgagtcgaagcccgaggggaacgccggggagtgcatgatgctgtcgaagccgtcgttctggcggtgggagagctcgctccacgactgctcgtcgaaggacctcttcctctccagcgtcagcctcggcttgtcgatgaggagccgcgagagatcgaggttgatctccgcctccgaggcgatggagacgtgggacgacaccctcttcatcctgctgatgacctcctcttcttttcttggtcaaatttgtttcagcacgaatcagttcgagtaaatccaatgtgaaattggaaagacaggcaatgcaagatcctgagaagaaatcaagaaagaatatattcggatttgacaccggcgaggagagaagaataccttgaatccgaagcggcggcggcggcgtgttcgccggagaagaatcgacgaggagagagaaaccagccaactaataaaccaaccaatgagagcgtcgccgttcaccgatcttgcggtctagatccaagcgcaagaacggcaagatctcctccggcggcggatgggatcaagagggggagggatcgtggaaggaGGTggtggtggtggagggaggagactatccgcatttctggctccggtgagcttacTAtttatagacagcattaattctCccccatttcctggcgccttcggaTTTTCtttcttcttcccggcgaacttc
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| CDS seq | atgaagagggtgtcgtcccacgtctccatcgcctcggaggcggagatcaacctcgatctctcgcggctcctcatcgacaagccgaggctgacgctggagaggaagaggtccttcgacgagcagtcgtggagcgagctctcccaccgccagaacgacggcttcgacagcatcatgcactccccggcgttcccctcgggcttcgactcgcccttctcgctggggacgctcggtgatccccacccgctcgtgaacgaggcgtgggaggctctcaggaagtccgtggtgtacttccgggggcagccggttgggacgattgccgccgtcgaccatgcgtccgaggaggtgctcaattatgatcaggtttttgtgcgagatttttttccaagtgcattggcctttctaatgaataatgagactgatatagtgaaaaacttcctcttgaaaacactccacctgcaaagctcggagaaaatggtagaccgtttcaagcttggagcaggagcgatgcctgcaagtttcaaggtggatcgtaatcggaacagaaacactgaaactttagttgcagattttggtgagagtgcaattgggagggtggctccagtggactctggattttggtggattattctactccgggcatatacaaagtatacggcagatactagtttggcagaatcaccagagtgtcagaactgcatgaggctgatactgaacctatgcttatctgagggatttgataccttcccaactctgctctgcacagatggctgctcaatgatagatcgtcgaatgggtatatatggttATcctattgagatccaagctctattctacatggcgttgagatgtgctctgcagatgcttaagccagatggtgaagggaaggatttcatagaaaagatagggcaacggctacatgctctaacctaccacatgaggaattacttctggctagatttcccacacctgaataacatatacagatataaaacagaagagtattcacacactgctgtgaacaaattcaatgtcatcccggattcaatccctgattgggtgtttgatttcatgccatgccggggaggctacttccttggcaacgtgagcccagctatgatggactttcggtggtttgcccttggaaattgcattgccattatATcatctctggctactccagagcaatcagtggcaataatggatctgattgaggagcggtgggaagagctagttggtgagatgcctctgaagatatgttaccctgcaattgagaaccatgaatggagaataatcactggctgcgacccgaagaacacccgGtggagttATcacaatggaggatcatggccagttctcctgtggctgctgacagcagcctgcatcaagactgggcgtccgcagatggcgaagcgcgccattgagctcgccgagtccaggcttctgaaggacggctggccagagtactacgatggcaagctgggacggttcatcggcaagcaggccaggaagttccagacatggtccatcgctggctacctcgtagcccgtatgatgctggaggacccgtcgacgctgatgatgatctccatggaggaagaccggccgggtaccaataccaagccgccccggctgcgtggaggtagcaccggcctcctcgtgcgccgctgcggcgacgacgacgacgacgagctcgtggtggcggcgctcctcaccgaggagtaccgcaggcgcgacacgctggagggcgccgagctcgtcgtgctccgctccggcgagtggagcgccacgccgatcgcgccgatcgtccacgacgacggcaagggcgaggagctctcctactgggagaccgacatggccgttcccgtcggcgaccggctgctgtgctacgtcgacctgtaccgcggcgtcatcctctgcggcgacgacctgttcgacgaaattcccccgcggctgcagtacgtgtcgctccccgtggaggcccccgccggcgcgttcgacgaggagcacttcgaccgccagggcgacaactatcggcgttgtctgctcaacactcgaaccgtcgtctgcgccatcgacggcggcggcgccgcgctcaaattcgtcgacatctcctcccgctgctgctgcggcagcctgggcaagcacaccacctgcgaccgttcgagccgcgccttcgtcatcagaacctggacactgaggatcgacggcgacggcgacgacgacatggcgtggaccatggacgccatgatcgacgccgccgagcttagtccctcgacgcctacgccgccctcccacggagctttccactacaccccatag
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| Protein seq | MKRVSSHVSIASEAEINLDLSRLLIDKPRLTLERKRSFDEQSWSELSHRQNDGFDSIMHSPAFPSGFDSPFSLGTLGDPHPLVNEAWEALRKSVVYFRGQPVGTIAAVDHASEEVLNYDQVFVRDFFPSALAFLMNNETDIVKNFLLKTLHLQSSEKMVDRFKLGAGAMPASFKVDRNRNRNTETLVADFGESAIGRVAPVDSGFWWIILLRAYTKYTADTSLAESPECQNCMRLILNLCLSEGFDTFPTLLCTDGCSMIDRRMGIYGYPIEIQALFYMALRCALQMLKPDGEGKDFIEKIGQRLHALTYHMRNYFWLDFPHLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPCRGGYFLGNVSPAMMDFRWFALGNCIAIISSLATPEQSVAIMDLIEERWEELVGEMPLKICYPAIENHEWRIITGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQMAKRAIELAESRLLKDGWPEYYDGKLGRFIGKQARKFQTWSIAGYLVARMMLEDPSTLMMISMEEDRPGTNTKPPRLRGGSTGLLVRRCGDDDDDELVVAALLTEEYRRRDTLEGAELVVLRSGEWSATPIAPIVHDDGKGEELSYWETDMAVPVGDRLLCYVDLYRGVILCGDDLFDEIPPRLQYVSLPVEAPAGAFDEEHFDRQGDNYRRCLLNTRTVVCAIDGGGAALKFVDISSRCCCGSLGKHTTCDRSSRAFVIRTWTLRIDGDGDDDMAWTMDAMIDAAELSPSTPTPPSHGAFHYTP |
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| Function | Alkaline/neutral invertase CINV2 [UniProtKB/Swiss-Prot:Q67XD9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0004980 | OsLaMu_11g0004980.01 | Chr11 | 3801072 | 3808513 | - | NAM | ||
| CDS seq | atgaagagggtgtcgtcccacgtctccatcgcctcggaggcggagatcaacctcgatctctcgcggctcctcatcgacaagccgaggctgacgctggagaggaagaggtccttcgacgagcagtcgtggagcgagctctcccaccgccagaacgacggcttcgacagcatcatgcactccccggcgttcccctcgggcttcgactcgcccttctcgctggggacgctcggtgatccccacccgctcgtgaacgaggcgtgggaggctctcaggaagtccgtggtgtacttccgggggcagccggttgggacgattgccgccgtcgaccatgcgtccgaggaggtgctcaattatgatcaggtttttgtgcgagatttttttccaagtgcattggcctttctaatgaataatgagactgatatagtgaaaaacttcctcttgaaaacactccacctgcaaagctcggagaaaatggtagaccgtttcaagcttggagcaggagcgatgcctgcaagtttcaaggtggatcgtaatcggaacagaaacactgaaactttagttgcagattttggtgagagtgcaattgggagggtggctccagtggactctggattttggtggattattctactccgggcatatacaaagtatacggcagatactagtttggcagaatcaccagagtgtcagaactgcatgaggctgatactgaacctatgcttatctgagggatttgataccttcccaactctgctctgcacagatggctgctcaatgatagatcgtcgaatgggtatatatggttATcctattgagatccaagctctattctacatggcgttgagatgtgctctgcagatgcttaagccagatggtgaagggaaggatttcatagaaaagatagggcaacggctacatgctctaacctaccacatgaggaattacttctggctagatttcccacacctgaataacatatacagatataaaacagaagagtattcacacactgctgtgaacaaattcaatgtcatcccggattcaatccctgattgggtgtttgatttcatgccatgccggggaggctacttccttggcaacgtgagcccagctatgatggactttcggtggtttgcccttggaaattgcattgccattatATcatctctggctactccagagcaatcagtggcaataatggatctgattgaggagcggtgggaagagctagttggtgagatgcctctgaagatatgttaccctgcaattgagaaccatgaatggagaataatcactggctgcgacccgaagaacacccgGtggagttATcacaatggaggatcatggccagttctcctgtggctgctgacagcagcctgcatcaagactgggcgtccgcagatggcgaagcgcgccattgagctcgccgagtccaggcttctgaaggacggctggccagagtactacgatggcaagctgggacggttcatcggcaagcaggccaggaagttccagacatggtccatcgctggctacctcgtagcccgtatgatgctggaggacccgtcgacgctgatgatgatctccatggaggaagaccggccgggtaccaataccaagccgccccggctgcgtggaggtagcaccggcctcctcgtgcgccgctgcggcgacgacgacgacgacgagctcgtggtggcggcgctcctcaccgaggagtaccgcaggcgcgacacgctggagggcgccgagctcgtcgtgctccgctccggcgagtggagcgccacgccgatcgcgccgatcgtccacgacgacggcaagggcgaggagctctcctactgggagaccgacatggccgttcccgtcggcgaccggctgctgtgctacgtcgacctgtaccgcggcgtcatcctctgcggcgacgacctgttcgacgaaattcccccgcggctgcagtacgtgtcgctccccgtggaggcccccgccggcgcgttcgacgaggagcacttcgaccgccagggcgacaactatcggcgttgtctgctcaacactcgaaccgtcgtctgcgccatcgacggcggcggcgccgcgctcaaattcgtcgacatctcctcccgctgctgctgcggcagcctgggcaagcacaccacctgcgaccgttcgagccgcgccttcgtcatcagaacctggacactgaggatcgacggcgacggcgacgacgacatggcgtggaccatggacgccatgatcgacgccgccgagcttagtccctcgacgcctacgccgccctcccacggagctttccactacaccccatag
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| Protein seq | MKRVSSHVSIASEAEINLDLSRLLIDKPRLTLERKRSFDEQSWSELSHRQNDGFDSIMHSPAFPSGFDSPFSLGTLGDPHPLVNEAWEALRKSVVYFRGQPVGTIAAVDHASEEVLNYDQVFVRDFFPSALAFLMNNETDIVKNFLLKTLHLQSSEKMVDRFKLGAGAMPASFKVDRNRNRNTETLVADFGESAIGRVAPVDSGFWWIILLRAYTKYTADTSLAESPECQNCMRLILNLCLSEGFDTFPTLLCTDGCSMIDRRMGIYGYPIEIQALFYMALRCALQMLKPDGEGKDFIEKIGQRLHALTYHMRNYFWLDFPHLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPCRGGYFLGNVSPAMMDFRWFALGNCIAIISSLATPEQSVAIMDLIEERWEELVGEMPLKICYPAIENHEWRIITGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQMAKRAIELAESRLLKDGWPEYYDGKLGRFIGKQARKFQTWSIAGYLVARMMLEDPSTLMMISMEEDRPGTNTKPPRLRGGSTGLLVRRCGDDDDDELVVAALLTEEYRRRDTLEGAELVVLRSGEWSATPIAPIVHDDGKGEELSYWETDMAVPVGDRLLCYVDLYRGVILCGDDLFDEIPPRLQYVSLPVEAPAGAFDEEHFDRQGDNYRRCLLNTRTVVCAIDGGGAALKFVDISSRCCCGSLGKHTTCDRSSRAFVIRTWTLRIDGDGDDDMAWTMDAMIDAAELSPSTPTPPSHGAFHYTP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0004980 | OsLaMu_11g0004980.03 | Chr11 | 3804572 | 3808513 | - | NAM | ||
| CDS seq | atgaagagggtgtcgtcccacgtctccatcgcctcggaggcggagatcaacctcgatctctcgcggctcctcatcgacaagccgaggctgacgctggagaggaagaggtccttcgacgagcagtcgtggagcgagctctcccaccgccagaacgacggcttcgacagcatcatgcactccccggcgttcccctcgggcttcgactcgcccttctcgctggggacgctcggtgatccccacccgctcgtgaacgaggcgtgggaggctctcaggaagtccgtggtgtacttccgggggcagccggttgggacgattgccgccgtcgaccatgcgtccgaggaggtgctcaattatgatcaggtttttgtgcgagatttttttccaagtgcattggcctttctaatgaataatgagactgatatagtgaaaaacttcctcttgaaaacactccacctgcaaagctcggagaaaatggtagaccgtttcaagcttggagcaggagcgatgcctgcaagtttcaaggtggatcgtaatcggaacagaaacactgaaactttagttgcagattttggtgagagtgcaattgggagggtggctccagtggactctggattttggtggattattctactccgggcatatacaaagtatacggcagatactagtttggcagaatcaccagagtgtcagaactgcatgaggctgatactgaacctatgcttatctgagggatttgataccttcccaactctgctctgcacagatggctgctcaatgatagatcgtcgaatgggtatatatggttATcctattgagatccaagctctattctacatggcgttgagatgtgctctgcagatgcttaagccagatggtgaagggaaggatttcatagaaaagatagggcaacggctacatgctctaacctaccacatgaggaattacttctggctagatttcccacacctgaataacatatacagatataaaacagaagagtattcacacactgctgtgaacaaattcaatgtcatcccggattcaatccctgattgggtgtttgatttcatgccatgccggggaggctacttccttggcaacgtgagcccagctatgatggactttcggtggtttgcccttggaaattgcattgccattatATcatctctggctactccagagcaatcagtggcaataatggatctgattgaggagcggtgggaagagctagttggtgagatgcctctgaagatatgttaccctgcaattgagaaccatgaatggagaataatcactggctgcgacccgaagaacacccgGtggagttATcacaatggaggatcatggccagttctcctgtggctgctgacagcagcctgcatcaagactgggcgtccgcagatggcgaagcgcgccattgagctcgccgagtccaggcttctgaaggacggctggccagagtactacgatggcaagctgggacggttcatcggcaagcaggccaggaagttccagacatggtccatcgctggctacctcgtagcccgtatgatgctggaggacccgtcgacgctgatgatgatctccatggaggaagaccggccggtgaagccgaccatgcgacggtcggcatcatggaatgcctga
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| Protein seq | MKRVSSHVSIASEAEINLDLSRLLIDKPRLTLERKRSFDEQSWSELSHRQNDGFDSIMHSPAFPSGFDSPFSLGTLGDPHPLVNEAWEALRKSVVYFRGQPVGTIAAVDHASEEVLNYDQVFVRDFFPSALAFLMNNETDIVKNFLLKTLHLQSSEKMVDRFKLGAGAMPASFKVDRNRNRNTETLVADFGESAIGRVAPVDSGFWWIILLRAYTKYTADTSLAESPECQNCMRLILNLCLSEGFDTFPTLLCTDGCSMIDRRMGIYGYPIEIQALFYMALRCALQMLKPDGEGKDFIEKIGQRLHALTYHMRNYFWLDFPHLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPCRGGYFLGNVSPAMMDFRWFALGNCIAIISSLATPEQSVAIMDLIEERWEELVGEMPLKICYPAIENHEWRIITGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQMAKRAIELAESRLLKDGWPEYYDGKLGRFIGKQARKFQTWSIAGYLVARMMLEDPSTLMMISMEEDRPVKPTMRRSASWNA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0004980 | OsLaMu_11g0004980.02 | Chr11 | 3801072 | 3808513 | - | NAM | ||
| CDS seq | atgaagagggtgtcgtcccacgtctccatcgcctcggaggcggagatcaacctcgatctctcgcggctcctcatcgacaagccgaggctgacgctggagaggaagaggtccttcgacgagcagtcgtggagcgagctctcccaccgccagaacgacggcttcgacagcatcatgcactccccggcgttcccctcgggcttcgactcgcccttctcgctggggacgctcggtgatccccacccgctcgtgaacgaggcgtgggaggctctcaggaagtccgtggtgtacttccgggggcagccggttgggacgattgccgccgtcgaccatgcgtccgaggaggtgctcaattatgatcaggtttttgtgcgagatttttttccaagtgcattggcctttctaatgaataatgagactgatatagtgaaaaacttcctcttgaaaacactccacctgcaaagctcggagaaaatggtagaccgtttcaagcttggagcaggagcgatgcctgcaagtttcaaggtggatcgtaatcggaacagaaacactgaaactttagttgcagattttggtgagagtgcaattgggagggtggctccagtggactctggattttggtggattattctactccgggcatatacaaagtatacggcagatactagtttggcagaatcaccagagtgtcagaactgcatgaggctgatactgaacctatgcttatctgagggatttgataccttcccaactctgctctgcacagatggctgctcaatgatagatcgtcgaatgggtatatatggttATcctattgagatccaagctctattctacatggcgttgagatgtgctctgcagatgcttaagccagatggtgaagggaaggatttcatagaaaagatagggcaacggctacatgctctaacctaccacatgaggaattacttctggctagatttcccacacctgaataacatatacagatataaaacagaagagtattcacacactgctgtgaacaaattcaatgtcatcccggattcaatccctgattgggtgtttgatttcatgccatgccggggaggctacttccttggcaacgtgagcccagctatgatggactttcggtggtttgcccttggaaattgcattgccattatATcatctctggctactccagagcaatcagtggcaataatggatctgattgaggagcggtgggaagagctagttggtgagatgcctctgaagatatgttaccctgcaattgagaaccatgaatggagaataatcactggctgcgacccgaagaacacccgGtggagttATcacaatggaggatcatggccagttctcctgtggctgctgacagcagcctgcatcaagactgggcgtccgcagatggcgaagcgcgccattgagctcgccgagtccaggcttctgaaggacggctggccagagtactacgatggcaagctgggacggttcatcggcaagcaggccaggaagttccagacatggtccatcgctggctacctcgtagcccgtatgatgctggaggacccgtcgacgctgatgatgatctccatggaggaagaccggccgggtaccaataccaagccgccccggctgcgtggaggtagcaccggcctcctcgtgcgccgctgcggcgacgacgacgacgacgagctcgtggtggcggcgctcctcaccgaggagtaccgcaggcgcgacacgctggagggcgccgagctcgtcgtgctccgctccggcgagtggagcgccacgccgatcgcgccgatcgtccacgacgacggcaagggcgaggagctctcctactgggagaccgacatggccgttcccgtcggcgaccggctgctgtgctacgtcgacctgtaccgcggcgtcatcctctgcggcgacgacctgttcgacgaaattcccccgcggctgcagtacgtgtcgctccccgtggaggcccccgccggcgcgttcgacgaggagcacttcgaccgccagggcgacaactatcggcgttgtctgctcaacactcgaaccgtcgtctgcgccatcgacggcggcggcgccgcgctcaaattcgtcgacatctcctcccgctgctgctgcggcagcctgggcaagcacaccacctgcgaccgttcgagccgcgccttcgtcatcagaacctggacactgaggatcgacggcgacggcgacgacgacatggcgtggaccatggacgccatgatcgacgccgccgagcttagtccctcgacgcctacgccgccctcccacggagctttccactacaccccatag
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| Protein seq | MKRVSSHVSIASEAEINLDLSRLLIDKPRLTLERKRSFDEQSWSELSHRQNDGFDSIMHSPAFPSGFDSPFSLGTLGDPHPLVNEAWEALRKSVVYFRGQPVGTIAAVDHASEEVLNYDQVFVRDFFPSALAFLMNNETDIVKNFLLKTLHLQSSEKMVDRFKLGAGAMPASFKVDRNRNRNTETLVADFGESAIGRVAPVDSGFWWIILLRAYTKYTADTSLAESPECQNCMRLILNLCLSEGFDTFPTLLCTDGCSMIDRRMGIYGYPIEIQALFYMALRCALQMLKPDGEGKDFIEKIGQRLHALTYHMRNYFWLDFPHLNNIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPCRGGYFLGNVSPAMMDFRWFALGNCIAIISSLATPEQSVAIMDLIEERWEELVGEMPLKICYPAIENHEWRIITGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQMAKRAIELAESRLLKDGWPEYYDGKLGRFIGKQARKFQTWSIAGYLVARMMLEDPSTLMMISMEEDRPGTNTKPPRLRGGSTGLLVRRCGDDDDDELVVAALLTEEYRRRDTLEGAELVVLRSGEWSATPIAPIVHDDGKGEELSYWETDMAVPVGDRLLCYVDLYRGVILCGDDLFDEIPPRLQYVSLPVEAPAGAFDEEHFDRQGDNYRRCLLNTRTVVCAIDGGGAALKFVDISSRCCCGSLGKHTTCDRSSRAFVIRTWTLRIDGDGDDDMAWTMDAMIDAAELSPSTPTPPSHGAFHYTP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 3808049 | 3808192 | - | OsLaMu_11g0004980.01 | OsLaMu_11g0004980.01,OsLaMu_11g0004980.02 | All |
| A3 | Chr11 | 3808054 | 3808192 | - | OsLaMu_11g0004980.01 | OsLaMu_11g0004980.01,OsLaMu_11g0004980.03 | All |
| A3 | Chr11 | 3808049 | 3808192 | - | OsLaMu_11g0004980.03 | OsLaMu_11g0004980.02,OsLaMu_11g0004980.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.100825 | 2.968347 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0175400 | RBH | 0.649874 | 0.429607 | 5.774349 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g07440 | RBH | 0.551218 | 0.277121 | 1.425596 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0175400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005080 | RBH | 0.377741 | 3.196265 | 2.592302 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0005050 | RBH | 0.0 | 0.489210 | 1.074896 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005080 | RBH | 0.567073 | 5.334622 | 6.845130 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004960 | RBH | 0.076125 | 0.381330 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004860 | RBH | 1.525462 | 4.994469 | 4.876641 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0062800 | RBH | 4.520746 | 10.994704 | 4.1895515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004940 | RBH | 0.359839 | 0.758768 | 1.000156 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0063100 | RBH | 4.0681175 | 10.023817 | 8.0131055 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004890 | RBH | 0.053456 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004990 | RBH | 0.075547 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005000 | RBH | 0.000000 | 8.079351 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005000 | RBH | 0.152398 | 0.0 | 1.263136 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004970 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G005040 | RBH | 0.132697 | 3.844810 | 1.392098 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004920 | RBH | 2.190804 | 12.603112 | 10.660778 |
