Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0103550 | OGI:11000350 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:141421-142729 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCCCATGCGTTATACGGAGGGACCTATCCCAAGATATGCTCGCCCCGACGATGCCTTGCAGATCCTCTCTCTCCAAGTGATAGAAGCAAAAGATGGTCTTAACTGGCCGCTACATGTCTATGGCTTGGTTGCCACCAGGGATTCTGTAGATCAAAAGCGCAACCTTCTTTTCAAGCGCACAAGGGATAATTGTTAACTTCTGACTCCACAGGTTAGATATCTTGTAATTTCCTCTTAACTTTATTGTTTCTCATTTTTCTTGGAGCTTGAAGTCCTCAACCTACTACAATTTCTACTAGTAGATTACTACTGTTATATACACTAGTTTGTATAAATGTGTTCTCTTTTTGGAGATTTAGTGCATTCACAGGCTGGTTGCACCTAAACTGTCAATTGGAGGCATGTTTACAACTCTTCTTTGCACATAACTCATTGGTACAAACTGAATTGATAGAATCGGCACCACTGGTATACCTATACTTCTTTTAAAAGAAGGCAATTGTGGTGTTCGCAGTGAATCTTCCTATTGCAGCTTTATATAAATTGATAATGTTACCAACAAACAAATATAATAGGATTGCCACATATATAACCAAGATGGGCACTCCCTGTTGAAAATAAATGAATAACATATTGCGTGCAAAACATAGATTAATTTTGTTTATGTTAGGCAATATTTTGTCATTCTTTCTTCCTTTGGTAGCAAAGTCAGGCATTTACCTAGTCTATGGAAATAAAAGATTGTGATGGACACTATATGCTCTTCAACTGAACTTAATATGGATTGGTTGCATACTGGTTCCTTTTTATGCGGAAGGAACTAACAAATCAACTGATCAATTGGTTGTGATGCCTGCAGGATTCATATTTGCAGTTAACAGGTCCATCTCGTGCAGTTTTGTTAATTGATCCAGTTACTTTTGAAGTTGACCTAAAAGTAAAGGGCAAAACAGAGACCGGTGACAAAGTGTTGAGCTTGAGGGTCTTTACGCACCACATGGCTCCCTCATATGTAAAGTATTCTCCCATGATCCGCAGATGTTTGTCCAGCAAGCATAGTGAGCTTGAGTTGGCATATGTTGTACTCGCTGATACAGTTGAAGCCACTATGGTTAGTGTCCAAGTTATTGAGGGGTCATGGCCAGATCATATGCGAGGACTAGTCGTTTGCCGTACCGCCAGCGTAGAGGGAGGGGATTCCGTGTTGCTTGATTCTCGAGATGGAAGAATGCCTATCAATTGAGCTTTCAAGGCATGTGGTTTCTGTGGAATCAAGGGGAAAGCTGGCTGTTGACGTGGTGGCCTCGC
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| CDS seq | CTTCTGACTCCACAGGATTCATATTTGCAGTTAACAGGTCCATCTCGTGCAGTTTTGTTAATTGATCCAGTTACTTTTGAAGTTGACCTAAAAGTAAAGGGCAAAACAGAGACCGGTGACAAAGTGTTGAGCTTGAGGGTCTTTACGCACCACATGGCTCCCTCATATGTAAAGTATTCTCCCATGATCCGCAGATGTTTGTCCAGCAAGCATAGTGAGCTTGAGTTGGCATATGTTGTACTCGCTGATACAGTTGAAGCCACTATGGTTAGTGTCCAAGTTATTGAGGGGTCATGGCCAGATCATATGCGAGGACTAGTCGTTTGCCGTACCGCCAGCGTAGAGGGAGGGGATTCCGTGTTGCTTGATTCTCGAGATGGAAGAATGCCTATCAATTGA |
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| Protein seq | LLTPQDSYLQLTGPSRAVLLIDPVTFEVDLKVKGKTETGDKVLSLRVFTHHMAPSYVKYSPMIRRCLSSKHSELELAYVVLADTVEATMVSVQVIEGSWPDHMRGLVVCRTASVEGGDSVLLDSRDGRMPIN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0103550 | OsNip_11t0103550-00 | Chr11 | 141421 | 142729 | + | RAP2018-11-26 | ||
| CDS seq | CTTCTGACTCCACAGGATTCATATTTGCAGTTAACAGGTCCATCTCGTGCAGTTTTGTTAATTGATCCAGTTACTTTTGAAGTTGACCTAAAAGTAAAGGGCAAAACAGAGACCGGTGACAAAGTGTTGAGCTTGAGGGTCTTTACGCACCACATGGCTCCCTCATATGTAAAGTATTCTCCCATGATCCGCAGATGTTTGTCCAGCAAGCATAGTGAGCTTGAGTTGGCATATGTTGTACTCGCTGATACAGTTGAAGCCACTATGGTTAGTGTCCAAGTTATTGAGGGGTCATGGCCAGATCATATGCGAGGACTAGTCGTTTGCCGTACCGCCAGCGTAGAGGGAGGGGATTCCGTGTTGCTTGATTCTCGAGATGGAAGAATGCCTATCAATTGA
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| Protein seq | LLTPQDSYLQLTGPSRAVLLIDPVTFEVDLKVKGKTETGDKVLSLRVFTHHMAPSYVKYSPMIRRCLSSKHSELELAYVVLADTVEATMVSVQVIEGSWPDHMRGLVVCRTASVEGGDSVLLDSRDGRMPIN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0104200 | SBH | 0.000000 | 0.193849 | 1.999788 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0103550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000260 | SBH | 0.871636 | 1.715124 | 1.949044 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000260 | SBH | 0.586082 | 1.889862 | 1.575666 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000280 | SBH | 1.338925 | 12.993856 | 5.747467 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000270 | SBH | 0.276803 | 0.096067 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000250 | SBH | 8.471019 | 3.542328 | 10.424809 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0002600 | RBH | 0 | 0 | 0.165063 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000270 | SBH | 0.458378 | 0.570691 | 0.744708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0002500 | RBH | 0.02646 | 0.022829 | 0.0644665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000100 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000220 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000140 | SBH | 0.0 | 0.0 | 0.795612 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000220 | RBH | 0.0 | 0.0 | 0.0 |
