Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0000260 | OGI:11000380 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:174758-178129 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTAAGTAATAAAAGGGGGAAGGTGCGGATTGGGATTTTTGGGAGGGGAGGAGAGGAACCCTAATCCTGTGGCGGCAAGCGGGCGGCGGAGGTGGAAAAGAATTAGGAGTCGGAGAGGAAGATGGCCAGCAACATCAAGCTTCCTTTGGCCGATGGGGAGGAGCGCTTGTCCTGTTGCGGCGAGCTGTTGGCCATGGGGAAAAAGTTGGAGGAAGCGGTGACGATCAGCGGCAAGCTTCCTTTGGAGGAGGGGATGGGGAAGGGGAAGCGGCGTCCAGTGGTGGCGGAGCTTGAAGATGAAGAGGAGTTTAAAGATGAGGAGTTGACTGAGCAGATAATTGCGCGAGACTTCCGTGTCAGCTGGGAACATCGCTTTAGCCCTCGCTATTCCTTCCACGACACCAGTAAGCCCTTTAATTTCCTTTCTAGTTTCTTTCAACTTCTTCCTCCGCAATCAACAAGTACTAGGGATTGTTTCTGCAAATCTATCTATCTATGCCCTTTAATCATGTTCCGTATCGCCATTATATTTTACACACACACACACACACCCCATTAGCTCGGATTCTGGCCGGTTCGTGTTCTATTAACATCTTGTTTTCTTTTATTTTGGGGTCAACAGATTGGCATTTAGTATGTGAAACAAGTGTTAGCGTTTCCTAATTACACTCAATAAACCCATTACAGCACAAATCCTGTCAACCACATCATGATACTAGGGAAAAAAAAAAAATTTGGACCAGACCCGATAGATTATCTGGCTATGTGCCCTCTTGATGGGGTATAGATTGTCCAGGCGGCATAAAGCCAGTGCTTGGCAACGACAAGGTGGACTAGTTTTGCCCCCTTCCTTTGCTCATGACGGAGGGAGGAGCTTTTGCGGTTGCTAGTGTCAATGAGAGGGCTTGGAGGTGGAAAGGCGGGCAATCTCTGCATCCCCCGATGTTTCAAGCAACGAGGAAAAACTTGAAGCTAGTCTTCTAATATTTTCTTTTTGGTTGTTTGTTTTTCTGTGTATCTCGGTTATGAGATGTGGAGTGTATGGACTTGTTTATCCTTTGGCCGTATGTCTGAGCAATTAGAGTCTGGATTGCTGCTATCCATTAGACCATTATCTAAAAAAAGTGCCCTCTTGATAATATCGACCAATTCTATTTCTTATATATGTTGGCACAAAAGCGTGTCAAATAATCCGTATCAGTAGGAACCAATTTGTTTTTTCTTCACTTAGCACCATGAATGAACTCTGGCAGAATTAAAGTGGATTATCAACTTAACGGTCTTTTCTTTTTCTTTATTTCTTGCTTTTCTTTTCTTGCCACTACTTGTCTGAGCAATAACCTAATTTCATGTCTGTTTATCTTACTCCTCATTCTCAGCAAGATTAATGTCTATATGTGTGTTTAACTAAAATTGGATTTGAGTCGAACATGGGACATAACAGTATATAACGGACATGGTGCAATCAGCATCCACACTGCTATTATTTGATAACAAATATTTCTACTACTTGACTGCAGCAACCGTATCTCCCATGCGCTATACAGAGGGACCTATCCCAAGATATGCTTGCTGCTGTGATGCTTTGCAGATCTTCTCTCTCCAAGTGAAAGAAGCAAAAGATGGTCTTGACTGGCCGCTACATGTGTATGGCTTGGTTGCCACCAGGGACTCTGTAGATCAAAGGCATAACCTTCTTTTCAAGCGCACAAGGGATAATTGTCAGATTCTCACTCCACAGGTATGTCTTGTAATTTCTTTGTACCTTTTGCTGTTTTCTCATTTTTCTTGGAGCTTGAAGTGCTCAACCTATTCTACTAGTAGTAGATTACTACTGTTCTGTACACTTGTTTGTATAAATGTGTTGTCTTTTTGGAGTTATTAGTGCATTCGTAGGCTGGTTGCACCTAAACTGTCAATTGAAGGCATGTTTGCAGTTCTTTTTCCTTATCACTCTTATTTGCACAGAATTAATTGGTACAAACTGAGTTGATAGAACTGGCACCACTATGACCTATACCTATACTCCTTTTGAAATAATCCATTCGTGGTGTTGGCAGTGAATCTGCTATGTCACCTCTTCCTAACGCAGTTTTCTATAAATTGACCTCTGATGTTAGTTAATATTACCAACAGCCAAACATAACAGGATTGCCACATATATAACCAAGATGAGTACTCCCTGTTGCAAATAAACGAATAGCATATTGTATGCAAAACATAAATTAGGTTTGTTTATTCTAGTCAATATCATGGCATACTTTCTTTTATTGGTAGCAAAGCTCTTGCATTTACCTAGTCGATGGAAATAGAAGTTTGTGATGGACATTGTATGCTCTTCAACTGACCTTAATATGGCCTCGTAGGAAATACCTGTTTCTTTAATATGGATTGGTTGCATACTGGTTCCTTGTTATGCGGGAGGAACCAAGTTTCAGTAATAATCAATTGGTTGTGATGCCTGCAGGATTCACACCTGCTGTTAACAGGCCCATCTCGTGCAGTTGTGGTAATTGATCCAGTAACGTTTGAAGTTGAACTAAAAGTAAGGGGAAAAACAGAGGCTGAGGATAAAGTGTTGAGCCTGACGGTCTTTATGCACCACACGGCTTACCCATAAACGAAGCATACTTACATGATCCGTAGATGTTTGTCCAGCAAACATGGCGAGCTTGAGTTGACATATGCTGCACTTGTTGGAACAGTTGAAGCCACTATGGTGAGTTTCCAAGTTACCGAGGGGTCATGGCCAGATCATCTGCGAGGAGTAGTCGTTTGCAAAACTGCCAGCGTAGAGGGAGGGGATATTGTGCTGCTTGATTCTCGGGATGGAAAAATGCCTATCAATTGCAATGGTGCCATTGAGCTTTCAAGGCGTGTGGTTTCTGCGGAATTAGGGGGAGAGCTGAGTGTTGATTTGGTGGCCTTGCAAGCCAACAATAGTTCAGAAATCGTCTCAAGAGGCAGGGTTGTTTTCACACCTGACGAGGCTGGGAGGAGCAGTGGTGTATTCGATCTTGTGTTTTGTAAGGTGGAAGCTACTGTTTGTTGGTCGCTCCTCGCAACCCTTGGGCAAATGCTCTCGGGCAACCCTTGGGCATAATGCTCCTGGCAGCAGACGTTGAACAATGCTGTCATGATCTATTTGCCTATAATTTCTGCCTAATTGTATTAAGACGGTGAATCTGTGTAGTCGAGTTGCAGCTAGTGTGTTAATCTGTCTGAATATTTCCAAGGGTGTTTCCTTCCTTTTGGTTGGTATTTAGCATCATGTTATGAGGGATCTGATCAATGTTATTCTGTCTGTCCTTGCTTGAGATGTTAATGCGATACTCGTTTGTAAATGATGATGGTTGATCTTATATGGAGTAG
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| CDS seq | ATGGCCAGCAACATCAAGCTTCCTTTGGCCGATGGGGAGGAGCGCTTGTCCTGTTGCGGCGAGCTGTTGGCCATGGGGAAAAAGTTGGAGGAAGCGGTGACGATCAGCGGCAAGCTTCCTTTGGAGGAGGGGATGGGGAAGGGGAAGCGGCGTCCAGTGGTGGCGGAGCTTGAAGATGAAGAGGAGTTTAAAGATGAGGAGTTGACTGAGCAGATAATTGCGCGAGACTTCCGTGTCAGCTGGGAACATCGCTTTAGCCCTCGCTATTCCTTCCACGACACCACAACCGTATCTCCCATGCGCTATACAGAGGGACCTATCCCAAGATATGCTTGCTGCTGTGATGCTTTGCAGATCTTCTCTCTCCAAGTGAAAGAAGCAAAAGATGGTCTTGACTGGCCGCTACATGTGTATGGCTTGGTTGCCACCAGGGACTCTGTAGATCAAAGGCATAACCTTCTTTTCAAGCGCACAAGGGATAATTGTCAGATTCTCACTCCACAGGATTCACACCTGCTGTTAACAGGCCCATCTCGTGCAGTTGTGGTAATTGATCCAGTAACGTTTGAAGTTGAACTAAAAGTAAGGGGAAAAACAGAGGCTGAGGATAAAGTGTTGAGCCTGACGGTCTTTATGCACCACACGGCTTACCCATAA
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| Protein seq | MASNIKLPLADGEERLSCCGELLAMGKKLEEAVTISGKLPLEEGMGKGKRRPVVAELEDEEEFKDEELTEQIIARDFRVSWEHRFSPRYSFHDTTTVSPMRYTEGPIPRYACCCDALQIFSLQVKEAKDGLDWPLHVYGLVATRDSVDQRHNLLFKRTRDNCQILTPQDSHLLLTGPSRAVVVIDPVTFEVELKVRGKTEAEDKVLSLTVFMHHTAYP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0000260 | OsKeNa_11g0000260.01 | Chr11 | 174758 | 178129 | + | NAM | ||
| CDS seq | ATGGCCAGCAACATCAAGCTTCCTTTGGCCGATGGGGAGGAGCGCTTGTCCTGTTGCGGCGAGCTGTTGGCCATGGGGAAAAAGTTGGAGGAAGCGGTGACGATCAGCGGCAAGCTTCCTTTGGAGGAGGGGATGGGGAAGGGGAAGCGGCGTCCAGTGGTGGCGGAGCTTGAAGATGAAGAGGAGTTTAAAGATGAGGAGTTGACTGAGCAGATAATTGCGCGAGACTTCCGTGTCAGCTGGGAACATCGCTTTAGCCCTCGCTATTCCTTCCACGACACCACAACCGTATCTCCCATGCGCTATACAGAGGGACCTATCCCAAGATATGCTTGCTGCTGTGATGCTTTGCAGATCTTCTCTCTCCAAGTGAAAGAAGCAAAAGATGGTCTTGACTGGCCGCTACATGTGTATGGCTTGGTTGCCACCAGGGACTCTGTAGATCAAAGGCATAACCTTCTTTTCAAGCGCACAAGGGATAATTGTCAGATTCTCACTCCACAGGATTCACACCTGCTGTTAACAGGCCCATCTCGTGCAGTTGTGGTAATTGATCCAGTAACGTTTGAAGTTGAACTAAAAGTAAGGGGAAAAACAGAGGCTGAGGATAAAGTGTTGAGCCTGACGGTCTTTATGCACCACACGGCTTACCCATAA
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| Protein seq | MASNIKLPLADGEERLSCCGELLAMGKKLEEAVTISGKLPLEEGMGKGKRRPVVAELEDEEEFKDEELTEQIIARDFRVSWEHRFSPRYSFHDTTTVSPMRYTEGPIPRYACCCDALQIFSLQVKEAKDGLDWPLHVYGLVATRDSVDQRHNLLFKRTRDNCQILTPQDSHLLLTGPSRAVVVIDPVTFEVELKVRGKTEAEDKVLSLTVFMHHTAYP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.586082 | 1.889862 | 1.575666 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0103800 | RBH | 2.195717 | 0.764139 | 2.040791 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01320 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0103800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000260 | RBH | 0.871636 | 1.715124 | 1.949044 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000250 | RBH | 0.0 | 0.000000 | 0.494638 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000280 | RBH | 1.338925 | 12.993856 | 5.747467 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000270 | RBH | 0.276803 | 0.096067 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000250 | RBH | 8.471019 | 3.542328 | 10.424809 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0002800 | RBH | 4.1134125 | 5.8618825 | 4.2491165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000270 | RBH | 0.458378 | 0.570691 | 0.744708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0002700 | RBH | 2.7554605 | 0.7957155 | 3.502628 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000120 | RBH | 0.057270 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000240 | RBH | 0.519531 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000240 | RBH | 1.311463 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000240 | RBH | 0.596748 | 0.0 | 0.971210 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000240 | RBH | 0.332196 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000270 | RBH | 0.501846 | 1.450618 | 1.664167 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000240 | RBH | 1.000108 | 0.0 | 3.680707 |
