Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0511800 | OGI:10060810 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:19706488-19707138 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACTTTTATAGGTGACACACAATGGGCATCATCAGAGCTCTTGGAATTCATTGGGCACATGAGAAATGGTGATATTTCTTATATTTCCCAATTTGATGTTCAGATTCTTCTGCTTGAGTATGTAAAGCAAAAAAATCTTCGTGATCCTCGCAGAAAAAGTCAAATTATTTGTGATGCGAGGCTTGCCAATTTGTTTAGGAAACCACATGTTGGCCACTTTGAGATGTTAAAGCTTTTGGAAATGCATTTTCATGCGAAGGAGACGGTAAATGGTGATGGCCAAAAAGGCATTGACTCAGATTCAGCTCAAATAGACAGTGGAGGATATAGTGATATGCCAAGTAAATTATGCTCTGATAAGAGGAGGAAGATTCATAAGAAGATTGAGAGAGAATCACCAGCTAATCTAGAGGATTATGCAGCGATTGACATGCACAATATCAATTTGATTTACTTGCGCCGCAGCTTGCTAGAGGATCTTATTGATGATAATGGCACGTTCTCTGACAAAATTACTGGTGCTTTCGTGAGGATAAGGACTCCTTGTGTTGGCCAAAAGCAAGATATTTACCGCCTGGTGAAAGTTCTTGGTGAGATTTTTTTTACTATACTGACGGGAGCTACTAATTTCCATGAAACCAGAGTTTGA
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| CDS seq | ATGACTTTTATAGGTGACACACAATGGGCATCATCAGAGCTCTTGGAATTCATTGGGCACATGAGAAATGGTGATATTTCTTATATTTCCCAATTTGATGTTCAGATTCTTCTGCTTGAGTATGTAAAGCAAAAAAATCTTCGTGATCCTCGCAGAAAAAGTCAAATTATTTGTGATGCGAGGCTTGCCAATTTGTTTAGGAAACCACATGTTGGCCACTTTGAGATGTTAAAGCTTTTGGAAATGCATTTTCATGCGAAGGAGACGGTAAATGGTGATGGCCAAAAAGGCATTGACTCAGATTCAGCTCAAATAGACAGTGGAGGATATAGTGATATGCCAAGTAAATTATGCTCTGATAAGAGGAGGAAGATTCATAAGAAGATTGAGAGAGAATCACCAGCTAATCTAGAGGATTATGCAGCGATTGACATGCACAATATCAATTTGATTTACTTGCGCCGCAGCTTGCTAGAGGATCTTATTGATGATAATGGCACGTTCTCTGACAAAATTACTGGTGCTTTCGTGAGGATAAGGACTCCTTGTGTTGGCCAAAAGCAAGATATTTACCGCCTGGTGAAAGTTCTTGGTGAGATTTTTTTTACTATACTGACGGGAGCTACTAATTTCCATGAAACCAGAGTTTGA
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| Protein seq | MTFIGDTQWASSELLEFIGHMRNGDISYISQFDVQILLLEYVKQKNLRDPRRKSQIICDARLANLFRKPHVGHFEMLKLLEMHFHAKETVNGDGQKGIDSDSAQIDSGGYSDMPSKLCSDKRRKIHKKIERESPANLEDYAAIDMHNINLIYLRRSLLEDLIDDNGTFSDKITGAFVRIRTPCVGQKQDIYRLVKVLGEIFFTILTGATNFHETRV |
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| Function | Zinc finger CCCH domain-containing protein 19 [UniProtKB/Swiss-Prot:Q9SIV5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0511800 | OsNip_10t0511800-00 | Chr10 | 19706488 | 19707138 | + | RAP2018-11-26 | ||
| CDS seq | ATGACTTTTATAGGTGACACACAATGGGCATCATCAGAGCTCTTGGAATTCATTGGGCACATGAGAAATGGTGATATTTCTTATATTTCCCAATTTGATGTTCAGATTCTTCTGCTTGAGTATGTAAAGCAAAAAAATCTTCGTGATCCTCGCAGAAAAAGTCAAATTATTTGTGATGCGAGGCTTGCCAATTTGTTTAGGAAACCACATGTTGGCCACTTTGAGATGTTAAAGCTTTTGGAAATGCATTTTCATGCGAAGGAGACGGTAAATGGTGATGGCCAAAAAGGCATTGACTCAGATTCAGCTCAAATAGACAGTGGAGGATATAGTGATATGCCAAGTAAATTATGCTCTGATAAGAGGAGGAAGATTCATAAGAAGATTGAGAGAGAATCACCAGCTAATCTAGAGGATTATGCAGCGATTGACATGCACAATATCAATTTGATTTACTTGCGCCGCAGCTTGCTAGAGGATCTTATTGATGATAATGGCACGTTCTCTGACAAAATTACTGGTGCTTTCGTGAGGATAAGGACTCCTTGTGTTGGCCAAAAGCAAGATATTTACCGCCTGGTGAAAGTTCTTGGTGAGATTTTTTTTACTATACTGACGGGAGCTACTAATTTCCATGAAACCAGAGTTTGA
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| Protein seq | MTFIGDTQWASSELLEFIGHMRNGDISYISQFDVQILLLEYVKQKNLRDPRRKSQIICDARLANLFRKPHVGHFEMLKLLEMHFHAKETVNGDGQKGIDSDSAQIDSGGYSDMPSKLCSDKRRKIHKKIERESPANLEDYAAIDMHNINLIYLRRSLLEDLIDDNGTFSDKITGAFVRIRTPCVGQKQDIYRLVKVLGEIFFTILTGATNFHETRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.930121 | 1.153804 | 4.045454 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0112600 | RBH | 4.310908 | 3.263892 | 6.596437 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g36810 | RBH | 1.577413 | 1.283148 | 1.761917 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0511800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016970 | SBH | 0.416665 | 10.294712 | 11.285263 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0017260 | SBH | 0.300494 | 2.826652 | 4.744826 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0016710 | SBH | 0.931954 | 4.945839 | 14.692227 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0017190 | SBH | 0.182888 | 0.302496 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0325300 | SBH | 7.164956 | 18.7672575 | 40.0189785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0016870 | SBH | 0.333770 | 0.495784 | 2.183669 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0348300 | SBH | 12.8498945 | 27.5026645 | 47.523336 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0017030 | SBH | 4.745494 | 13.911478 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0016710 | SBH | 0.485342 | 0.0 | 2.091673 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G016760 | SBH | 0.473146 | 2.663270 | 4.397910 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016940 | RBH | 0.547104 | 11.515459 | 9.976866 |
