Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0112600 | OGI:03001880 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:713808-714995 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTTAGCACACTACATGATTTGTGCGGTTGCACTATTTGAAAGTGATTTTGATATCAGGTCCTGTTCAAGTTGCATCTTTGCTCAAGCTCTGCTATATGTTTCCTTCGATTTCATGTTCTTGCATCTCAGCTTTTTCACAGTTTATAGCTTTGCGCTTCAAATTCTAAAAGTTTCACGCCTTTTCATGTGTGTGTTGAGTTCATTGCAGATTGTTGTTGATTTTGATGATCAAAATAGTTGGGAATACCTGTTCAAGCTATATTGGGTGGATCTGAAAGGGAAGCTTTCATTAACATTGGAAGAACTAACTAGCGCCAAGGCTCGATGGAATGCACCTACTACTTACACTAGGAAAGAAAAGGATGAGTCATCTGATGACCTTTATGATGCTAATAATGACGATGATGCTGGTTCTGACTGCTCCTCAGGAAAGCGAAAGAGAAATTCTTCGAGAAAAAAGGGTCGAAAACGTCGGAAACCAAATTCTGATTGTAGCATTGCCACAAAAAAGGTTGAGACTGTTACTAGAGATGATGGAACCCTGCCCAACAAGGTACCAACTGAAGAGGCGTCCTTGCCGGTAGACACCAAATGGGCTTCGCCAGAGCTACTGGAGTTTGTAGGGCACATGAGAGATGGCGATCAATCTTTTATTTCCCAGTTTGATGTTCAGGCTCTTTTGCTTGACTATATAAAACAGAACAACCTCCGTGACCCTCAAAGAAAGAGTCAAATTATCTGTGACTCAAGGCTTCACCGTTTATTCAGGAAAACACGCGTCGCTCATTTTGAGATGTTGAAGCTTTTGGAGATGCACTTTATTGTAAGTGAGCCTTCTGCAGTAAATGATGGTAGCCAAGGGATTATCAATCCTGATTCAGCTCAAATAGATCATGCCAGTGGATATAATGACATGGCAGCAAAGTTCTCTCCTGATAGGAGACGAAGGATGCATAGAAAGATGGAAAGAGAACCACAGGCTAATCCTGAAGATTACGCAGCAATTGATATGCATAATATTAACCTAATTTACCTGCGCCGTAGCTTGATGGAGGATCTTATTGATGATCCCACATTGTCAGACAAAATTTCTGGTGCTTTTGTCAGGATAAGAATTTCGGGACTTGGTCAGAAGCAAGATATGTATCGTCTGGTGAAAGTTGTCGGTAAGATATTTAACCTCTAA
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| CDS seq | ATGTTAGCACACTACATGATTTGTGCGGTTGCACTATTTGAAAGTGATTTTGATATCAGGTCCTGTTCAAGTTGCATCTTTGCTCAAGCTCTGCTATATGTTTCCTTCGATTTCATGTTCTTGCATCTCAGCTTTTTCACAGTTTATAGCTTTGCGCTTCAAATTCTAAAAGTTTCACGCCTTTTCATGTGTGTGTTGAGTTCATTGCAGATTGTTGTTGATTTTGATGATCAAAATAGTTGGGAATACCTGTTCAAGCTATATTGGGTGGATCTGAAAGGGAAGCTTTCATTAACATTGGAAGAACTAACTAGCGCCAAGGCTCGATGGAATGCACCTACTACTTACACTAGGAAAGAAAAGGATGAGTCATCTGATGACCTTTATGATGCTAATAATGACGATGATGCTGGTTCTGACTGCTCCTCAGGAAAGCGAAAGAGAAATTCTTCGAGAAAAAAGGGTCGAAAACGTCGGAAACCAAATTCTGATTGTAGCATTGCCACAAAAAAGGTTGAGACTGTTACTAGAGATGATGGAACCCTGCCCAACAAGGTACCAACTGAAGAGGCGTCCTTGCCGGTAGACACCAAATGGGCTTCGCCAGAGCTACTGGAGTTTGTAGGGCACATGAGAGATGGCGATCAATCTTTTATTTCCCAGTTTGATGTTCAGGCTCTTTTGCTTGACTATATAAAACAGAACAACCTCCGTGACCCTCAAAGAAAGAGTCAAATTATCTGTGACTCAAGGCTTCACCGTTTATTCAGGAAAACACGCGTCGCTCATTTTGAGATGTTGAAGCTTTTGGAGATGCACTTTATTGTAAGTGAGCCTTCTGCAGTAAATGATGGTAGCCAAGGGATTATCAATCCTGATTCAGCTCAAATAGATCATGCCAGTGGATATAATGACATGGCAGCAAAGTTCTCTCCTGATAGGAGACGAAGGATGCATAGAAAGATGGAAAGAGAACCACAGGCTAATCCTGAAGATTACGCAGCAATTGATATGCATAATATTAACCTAATTTACCTGCGCCGTAGCTTGATGGAGGATCTTATTGATGATCCCACATTGTCAGACAAAATTTCTGGTGCTTTTGTCAGGATAAGAATTTCGGGACTTGGTCAGAAGCAAGATATGTATCGTCTGGTGAAAGTTGTCGGTAAGATATTTAACCTCTAA
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| Protein seq | MLAHYMICAVALFESDFDIRSCSSCIFAQALLYVSFDFMFLHLSFFTVYSFALQILKVSRLFMCVLSSLQIVVDFDDQNSWEYLFKLYWVDLKGKLSLTLEELTSAKARWNAPTTYTRKEKDESSDDLYDANNDDDAGSDCSSGKRKRNSSRKKGRKRRKPNSDCSIATKKVETVTRDDGTLPNKVPTEEASLPVDTKWASPELLEFVGHMRDGDQSFISQFDVQALLLDYIKQNNLRDPQRKSQIICDSRLHRLFRKTRVAHFEMLKLLEMHFIVSEPSAVNDGSQGIINPDSAQIDHASGYNDMAAKFSPDRRRRMHRKMEREPQANPEDYAAIDMHNINLIYLRRSLMEDLIDDPTLSDKISGAFVRIRISGLGQKQDMYRLVKVVGKIFNL |
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| Function | Zinc finger CCCH domain-containing protein 19 [UniProtKB/Swiss-Prot:Q9SIV5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0112600 | OsNip_03t0112600-00 | Chr03 | 713808 | 714995 | + | RAP2018-11-26 | ||
| CDS seq | ATGTTAGCACACTACATGATTTGTGCGGTTGCACTATTTGAAAGTGATTTTGATATCAGGTCCTGTTCAAGTTGCATCTTTGCTCAAGCTCTGCTATATGTTTCCTTCGATTTCATGTTCTTGCATCTCAGCTTTTTCACAGTTTATAGCTTTGCGCTTCAAATTCTAAAAGTTTCACGCCTTTTCATGTGTGTGTTGAGTTCATTGCAGATTGTTGTTGATTTTGATGATCAAAATAGTTGGGAATACCTGTTCAAGCTATATTGGGTGGATCTGAAAGGGAAGCTTTCATTAACATTGGAAGAACTAACTAGCGCCAAGGCTCGATGGAATGCACCTACTACTTACACTAGGAAAGAAAAGGATGAGTCATCTGATGACCTTTATGATGCTAATAATGACGATGATGCTGGTTCTGACTGCTCCTCAGGAAAGCGAAAGAGAAATTCTTCGAGAAAAAAGGGTCGAAAACGTCGGAAACCAAATTCTGATTGTAGCATTGCCACAAAAAAGGTTGAGACTGTTACTAGAGATGATGGAACCCTGCCCAACAAGGTACCAACTGAAGAGGCGTCCTTGCCGGTAGACACCAAATGGGCTTCGCCAGAGCTACTGGAGTTTGTAGGGCACATGAGAGATGGCGATCAATCTTTTATTTCCCAGTTTGATGTTCAGGCTCTTTTGCTTGACTATATAAAACAGAACAACCTCCGTGACCCTCAAAGAAAGAGTCAAATTATCTGTGACTCAAGGCTTCACCGTTTATTCAGGAAAACACGCGTCGCTCATTTTGAGATGTTGAAGCTTTTGGAGATGCACTTTATTGTAAGTGAGCCTTCTGCAGTAAATGATGGTAGCCAAGGGATTATCAATCCTGATTCAGCTCAAATAGATCATGCCAGTGGATATAATGACATGGCAGCAAAGTTCTCTCCTGATAGGAGACGAAGGATGCATAGAAAGATGGAAAGAGAACCACAGGCTAATCCTGAAGATTACGCAGCAATTGATATGCATAATATTAACCTAATTTACCTGCGCCGTAGCTTGATGGAGGATCTTATTGATGATCCCACATTGTCAGACAAAATTTCTGGTGCTTTTGTCAGGATAAGAATTTCGGGACTTGGTCAGAAGCAAGATATGTATCGTCTGGTGAAAGTTGTCGGTAAGATATTTAACCTCTAA
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| Protein seq | MLAHYMICAVALFESDFDIRSCSSCIFAQALLYVSFDFMFLHLSFFTVYSFALQILKVSRLFMCVLSSLQIVVDFDDQNSWEYLFKLYWVDLKGKLSLTLEELTSAKARWNAPTTYTRKEKDESSDDLYDANNDDDAGSDCSSGKRKRNSSRKKGRKRRKPNSDCSIATKKVETVTRDDGTLPNKVPTEEASLPVDTKWASPELLEFVGHMRDGDQSFISQFDVQALLLDYIKQNNLRDPQRKSQIICDSRLHRLFRKTRVAHFEMLKLLEMHFIVSEPSAVNDGSQGIINPDSAQIDHASGYNDMAAKFSPDRRRRMHRKMEREPQANPEDYAAIDMHNINLIYLRRSLMEDLIDDPTLSDKISGAFVRIRISGLGQKQDMYRLVKVVGKIFNL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.310908 | 3.263892 | 6.596437 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0511800 | RBH | 0.930121 | 1.153804 | 4.045454 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0112600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0001070 | SBH | 1.090552 | 22.248667 | 14.808888 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0001050 | SBH | 0.632317 | 11.090995 | 9.857386 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0001070 | SBH | 2.424623 | 19.033964 | 22.290518 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0001060 | SBH | 0.361565 | 0.626111 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0001080 | SBH | 14.892982 | 33.662037 | 60.561737 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0001060 | SBH | 0.486949 | 1.539804 | 3.055732 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0001110 | SBH | 0.374904 | 0.700263 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0001130 | SBH | 0.999484 | 27.868856 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0001080 | SBH | 8.440265 | 44.418285 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0001090 | SBH | 1.548335 | 2.713978 | 3.078440 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0001100 | SBH | 0.636816 | 15.419227 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G001100 | SBH | 0.730885 | 7.856176 | 6.784804 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0000970 | SBH | 3.602783 | 84.516785 | 23.309978 |
