Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0464500 | OGI:10054640 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:17140936-17145821 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACGAACGCCGCCCGGGGAACGACATGGCCGGCCTCACCGAGCGGCGCCGCAGCTGCGACGGCGGCGGCGGCGGCGACAGCGACAGGGACGGCGCCGGTAGCGGCGCCGAGCGGCTCATCGCCACGACGACCTCCGGCTGGAGCGTCTGCGAGCGCTGCAGCATGTCGACCATGAAGGGCGTCTGGTAGGTATGGATGACGCTGGTGAGCTCCGTCGAGTCGCCGCGCGCCGTGGCGCGCTGCCACGAGTGGGAGCTCAGGCCGGCGAGCATGTAGGCGCGGCCGGACTCCTCGTACCGCTGCCGCGTCTCCACCCTGTCCTGCATCTCCCTCAGCTCCGCCGCCAGCGCCACGGACTGCGGGTCGTCGTCCGCCCGCGACTCGAGCACGCCGCGGCGCTCGTCGAGGATGGCGGCGGCCAGCTCGAAGTCGCCCCGCTCCGCGGCGGCGCGCGCGGCGGCCATGTCCTCCGTGGCCTGGACGCGATGCAGCTCCCGCTCGACCTCCGGCGACATGCCGTCGTAGCCCACGGGGGCGTCCACCGTGCGAGGGACGGTCACCGTGTCGCCCCCGACGCGGACGGTCTCCATGGTGGCCGTGCTCCGGTAGGTGCAGCTCGGCGTGATCAGGGCGGACACCCCGCGCGCCGCCGGGACGCGCACGGTGACGAGGAAGTCCCTCTCCTCGTCGGCGTAGAGGTCGCCGACGTCGACGAAGCCGCCGCGGCCGTCGCCGTCCACGTGGCTCGCGTAGCCGCCCGACCTGACGGAGGTCAGCAGCACGCCGTCGTCGCCGCACTCGACGCTCAGCCGCAGCTCCTGCGCCACCACGCTGAGTAGGCCGCCGATGCACTGGGCGAACGCGTCCTGGATCGAGCCCGCCGCGTCGATGAACGAGAACGTGCCGCCGGACATCTCAGCGATGGAGTGCATCGCCGGCGAGTCGTGGTCGGCGCCGAAGCCGAAGGCGTGGACCTGCACGTGGCGCGCCGACCCGCCACCGGGAAGGAGCGAGCTCGGGACGAGCACGGCGTAGTCCGGCTGGTCGCCGCCGCCGCCGCCGCCGCGCGGCACCGGGACGGTGTAGGTGTCCCGGCCGTCGGAGAGGAGGACGATGCTGCACACGGGGTTCCTCTCCCTCCTGTCCTCCATCACCCTCGCCGCCTTCCTCAGCGCGTCGGCGATGTTGGTGCCGCCGTCGGCGACGAGCGAGCTCACCCTCTGCAACGCGCGCTGCCGCCCGGACTCCGTCATCTTCCTCAGCGGGAACAGCCTCCTCGCCGACGACGAGAACGTGACGACGGACAGCCGGTCGCCGGGGCCGAGCGCCTGGATCACGAAGCTCATGGCGCGCTTCAGCAGCGCCAGCTTCGTCCCGGCCATGCTCCAGCTCACGTCGAGCACGGTGACGAGGTCGATGGGCGCGCGGGAGGTCACCGTCGCCGGAGAAGACGGAGCCTTCAGGTGGATCAACACCGCAAACTCCTCAACCATCACAGACTCCTCCATCGCCGGGAACGCAGCGTACGTCGTGATCCCAACAGAAGCAGGCGCCATTTCATCAGCGACGATCGAATCAACATCCTGAGTTCCAACCACATCTTCAGCAGGATGAAGATCCAACTGTTCATCGTCATCGAAAATGCCGCCATCCAGCGTACGAAAGATCGGGAGCTGCCATTGCCGGGTCACGCTGTCTCCGCGAGACAGCCTGCGGACAACGGCCATTCGCTGATGCTGATGCCTGTCATCCAGTGGGTGAGGGTTCACTCGAGCTGTTCCAAGAAGACTAGCATCTGCTGCTGCTGCTGCAGGGAGAGGGCCCTGGAACGGCAGCTCCTTCCACACGGCGCGGCAAATCGGGCAGACGGTGTTGCCGTGGCGAACGCTGGAGGAGATGCAGTGGAAGTGGAACTTGTGGGAGCATTCCGCGGTGAACAAGGCTTGGCCATTGCCTGAACACATTCCTCCGAGGCAAATGGCACATATCTTCTGAAAAAAGTAACCAAGAAAAGCAACAGAAGATAGTTAGTAACTGCAGATCGATATAGCAATCGGCAGAGTGGAGTTTCTTTGAAAAAAAAACACCAATTGAAGTTAAATAAAAAATATGATCCAGATTCATGCTAACATGTAAAGCTTTGTTCCCTAGAATGAACTGTACTTATTTCACATTACAAAATGAAGGAATGAGTTGTTTTCAAGAGCATCAGATATTAGCAATGACTGAAAAGAGGGAAGGGAGCCTAAATAATAGCCAAATTGTATGCTCCTAGTGAGTCTTAGAGAAAACTATAGTAGTATCAACAATGTCAACTGTCATCAGCATCAGCACAAGAGGCTAATGTCCAGTCCAAGTCATGCAATCCAAGTATACAAGGCAGACTGTAAGTCGTAAACTACTACTATTATTAATTAAACATCAAGCAAAATAGTCAACTCATGCAGCCGGACCCTGATATTATCCAGATGCTGATAGAAGACACGAAATCGAATTAGATGCAGCTAGTAAAACATTACAAAAGCACATCAATCGATGACATTGATGTCAGCTATCTGTGTGTCTATCCTTTCATTATTCAGCTCACCCCTTTCTGGAAAAGTATGAAGCACACAGTATATGGGGCAGAGCACATATACTCTGAATTATACCATATGGGCCAATCTTTCAAGAAGCATCCACATATTCTCAAATACATGCTGTTTGCAGCAGAGGATCACTTGACCAATTATTGATAACCAGAAAAGGATGCTGGTCTCCCCCTCTGATCCTCTCCCTGTCTTTAGATCAATGTTGATATCTAAGTCAAACCAACCAAGATGCTTTGCAGATCAATTTTAACTATAGCATGATAAGGCACATAATTAGAGATGACATTCGTGCATGTGAAATCATGAAGTGGATTGATTTAATTGCCAATTGCTGAGGTAAATCTTATCCAGTAAACTATGTTGACCAAATGTCATTTTATTTCAAGTATATTTTAGAAGCTCCATTGGAATATTAGGACAACATGTTATATGATAAATATAACAGGCTACCTCATCACATACTACTACTTGGGAATATTTGTTTGTTAAAACGATCCAGTGTTTTGCTCATCAGAGTGATGTCAAGAGCTGAATTTCCTAAAAAAAAAAGGTTTCTGTAAGCCTTATCTCGTACATGGCATCACCCAACTGATCAAAGAAAAAACATGGGCTGGAAAGGGAAAGAAAACAGTAGGCTTCAAAAGATGAGGAGAGAGTTGGTGAACAAGAGAGGTGTCCTGCCCTTCCTCGGAATTGCACACATAATTATACAACAGAACAAGCAATCAAAATTTTCGTCCTTTTCTAGTCCTAAATAATTAAGAAACTATTGCATACTTCTCCGGTTGCTTACTAGCACACAACGCGCTACATTCATGATAATTTCAATGGATAAAAAAATAAAAAAAACAAACATAAAAGTATTAAACACGCGCAAGAAATTCAAATGCAAGAATCAACCCAAAGACCAAAAAAATACAGAGAAAAGGTCCATGCAAGCAACCGGGCAAGCAGAATTCCCTAGAAGTAAAAACAACTAATTCTTTTAGATGGCAATGTACCAATCAAAGCAGAAAGGTATTGCATGGTAGTACGATGTTAAGTAGCAACGACGTTTTCTCCAGGTTTTTGGCACAGTTTAACATCGTTGGCATGATATGGTGTTGATCTACAAGACGATCAACGAAATCAGGTACCCCGACAAAAACCCTGTCTCAGATGAAACACAAGTAGCACAAGCTTGGGTATCATAATGAAACAAAGGATCTGTTGATTTCGGTGAAAGATGGCAAAGGGAGCAAAATAATGCAGAACAACAATTGTATTCGGCATCATCTCTACTACTTTGGAAGTCATCCTTCTCCTTCACCACTACAATTCACCATCATAGTTCCTCATGTAAACAAACCAACTCTCTAAAAAAAATCTCCCCACCCAAAAACCATTGTTTTCACGCGAAGATTAACCTGAAAATCCAGATAGGACGTAGCACTATTCTTTTTTAAAAAAAGATCAGGCAAAAGTTTGGCCTTCAGGATCACTGCAGTTTTTCTTTTTGTGACAAAAGGCATATATCAGCATAAGATGGATATCCCTTTACAAAAAGAAATCTGACTAAGTTTCACAATGATTCCAAATTGCAGATATGATTAAAATCCCCGCTTACGTGCGGGGAACAAAAAGAACTAGCGAACACTGATTAAAGTGCCGTGTTTACCTTACCTAAACCCTACAAAGTTATGCTAATCTAAACGGATGCAGCCCTCTTGATCATGAATCATTCGAACAAAAATATCGTATCAACTTTCTTCAGGCGTGTCCTAGAACTACTATCAGATTTCAAACATCTCGGTTTTAAACAAGAGCAGTTTTACTTCTCACGAGATTAAAAAAATAAAAACCGATAAATCCCTATCAAAATCATATCATGAATCATTCGAATAAAATATCGTATCAACTTTCTTCATGTGTGTCCTAGAACCACTATCAGATTTCAACATAACTCATCTCGGTTTTAAACAAGAGCAGTTTTACTTCTCACGAGATTTTTTTAAAAAAAATAAAAACCGATAAATCCCTATCAAAATCATCGAGAGGATCACACGAGAGTGGGGAGAGCTGGATAAACTGGGCAAGGCGATCGATCTCACCGTGGAGCTCCTGCTCCCGCACCTCGACAGCCGCCGCGAGGAGGCCACATGCGCGGGCGGCGAGGCGGCCACCGACCTCCCCCTCCCTTCCCCCTCCTCCCCCTCCCCCTCCGCCTCCGCCGCCGCCGCCCGCACCCTCGGCGCGCGGACGCAGAGCCTGGTGGCAAGCGCGCGCTTGGCGCGCTCCCACTTCGCCACCGCCAT
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| CDS seq | ATGGCGGTGGCGAAGTGGGAGCGCGCCAAGCGCGCGCTTGCCACCAGGCTCTGCGTCCGCGCGCCGAGGGTGCGGGCGGCGGCGGCGGAGGCGGAGGGGGAGGGGGAGGAGGGGGAAGGGAGGGGGAGGTCGGTGGCCGCCTCGCCGCCCGCGCATGTGGCCTCCTCGCGGCGGCTGTCGAGGTGCGGGAGCAGGAGCTCCACGAAGATATGTGCCATTTGCCTCGGAGGAATGTGTTCAGGCAATGGCCAAGCCTTGTTCACCGCGGAATGCTCCCACAAGTTCCACTTCCACTGCATCTCCTCCAGCGTTCGCCACGGCAACACCGTCTGCCCGATTTGCCGCGCCGTGTGGAAGGAGCTGCCGTTCCAGGGCCCTCTCCCTGCAGCAGCAGCAGCAGATGCTAGTCTTCTTGGAACAGCTCGAGTGAACCCTCACCCACTGGATGACAGGCATCAGCATCAGCGAATGGCCGTTGTCCGCAGGCTGTCTCGCGGAGACAGCGTGACCCGGCAATGGCAGCTCCCGATCTTTCGTACGCTGGATGGCGGCATTTTCGATGACGATGAACAGTTGGATCTTCATCCTGCTGAAGATGTGGTTGGAACTCAGGATGTTGATTCGATCGTCGCTGATGAAATGGCGCCTGCTTCTGTTGGGATCACGACGTACGCTGCGTTCCCGGCGATGGAGGAGTCTGTGATGGTTGAGGAGTTTGCGGTGTTGATCCACCTGAAGGCTCCGTCTTCTCCGGCGACGGTGACCTCCCGCGCGCCCATCGACCTCGTCACCGTGCTCGACGTGAGCTGGAGCATGGCCGGGACGAAGCTGGCGCTGCTGAAGCGCGCCATGAGCTTCGTGATCCAGGCGCTCGGCCCCGGCGACCGGCTGTCCGTCGTCACGTTCTCGTCGTCGGCGAGGAGGCTGTTCCCGCTGAGGAAGATGACGGAGTCCGGGCGGCAGCGCGCGTTGCAGAGGGTGAGCTCGCTCGTCGCCGACGGCGGCACCAACATCGCCGACGCGCTGAGGAAGGCGGCGAGGGTGATGGAGGACAGGAGGGAGAGGAACCCCGTGTGCAGCATCGTCCTCCTCTCCGACGGCCGGGACACCTACACCGTCCCGGTGCCGCGCGGCGGCGGCGGCGGCGGCGACCAGCCGGACTACGCCGTGCTCGTCCCGAGCTCGCTCCTTCCCGGTGGCGGGTCGGCGCGCCACGTGCAGCGCGCCACGGCGCGCGGCGACTCGACGGAGCTCACCAGCGTCATCCATACCTACCAGACGCCCTTCATGGTCGACATGCTGCAGCGCTCGCAGACGCTCCAGCCGGAGGTCGTCGTGGCGATGAGCCGCTCGGCGCCGCTACCGGCGCCGTCCCTGTCGCTGTCGCCGCCGCCGCCGCCGTCGCAGCTGCGGCGCCGCTCGGTGAGGCCGGCCATGTCGTTCCCCGGGCGGCGTTCGTGA
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| Protein seq | MAVAKWERAKRALATRLCVRAPRVRAAAAEAEGEGEEGEGRGRSVAASPPAHVASSRRLSRCGSRSSTKICAICLGGMCSGNGQALFTAECSHKFHFHCISSSVRHGNTVCPICRAVWKELPFQGPLPAAAAADASLLGTARVNPHPLDDRHQHQRMAVVRRLSRGDSVTRQWQLPIFRTLDGGIFDDDEQLDLHPAEDVVGTQDVDSIVADEMAPASVGITTYAAFPAMEESVMVEEFAVLIHLKAPSSPATVTSRAPIDLVTVLDVSWSMAGTKLALLKRAMSFVIQALGPGDRLSVVTFSSSARRLFPLRKMTESGRQRALQRVSSLVADGGTNIADALRKAARVMEDRRERNPVCSIVLLSDGRDTYTVPVPRGGGGGGDQPDYAVLVPSSLLPGGGSARHVQRATARGDSTELTSVIHTYQTPFMVDMLQRSQTLQPEVVVAMSRSAPLPAPSLSLSPPPPPSQLRRRSVRPAMSFPGRRS |
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| Function | E3 ubiquitin-protein ligase WAV3 [UniProtKB/Swiss-Prot:Q9LTA6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0464500 | OsNip_10t0464500-00 | Chr10 | 17140936 | 17145821 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGTGGCGAAGTGGGAGCGCGCCAAGCGCGCGCTTGCCACCAGGCTCTGCGTCCGCGCGCCGAGGGTGCGGGCGGCGGCGGCGGAGGCGGAGGGGGAGGGGGAGGAGGGGGAAGGGAGGGGGAGGTCGGTGGCCGCCTCGCCGCCCGCGCATGTGGCCTCCTCGCGGCGGCTGTCGAGGTGCGGGAGCAGGAGCTCCACGAAGATATGTGCCATTTGCCTCGGAGGAATGTGTTCAGGCAATGGCCAAGCCTTGTTCACCGCGGAATGCTCCCACAAGTTCCACTTCCACTGCATCTCCTCCAGCGTTCGCCACGGCAACACCGTCTGCCCGATTTGCCGCGCCGTGTGGAAGGAGCTGCCGTTCCAGGGCCCTCTCCCTGCAGCAGCAGCAGCAGATGCTAGTCTTCTTGGAACAGCTCGAGTGAACCCTCACCCACTGGATGACAGGCATCAGCATCAGCGAATGGCCGTTGTCCGCAGGCTGTCTCGCGGAGACAGCGTGACCCGGCAATGGCAGCTCCCGATCTTTCGTACGCTGGATGGCGGCATTTTCGATGACGATGAACAGTTGGATCTTCATCCTGCTGAAGATGTGGTTGGAACTCAGGATGTTGATTCGATCGTCGCTGATGAAATGGCGCCTGCTTCTGTTGGGATCACGACGTACGCTGCGTTCCCGGCGATGGAGGAGTCTGTGATGGTTGAGGAGTTTGCGGTGTTGATCCACCTGAAGGCTCCGTCTTCTCCGGCGACGGTGACCTCCCGCGCGCCCATCGACCTCGTCACCGTGCTCGACGTGAGCTGGAGCATGGCCGGGACGAAGCTGGCGCTGCTGAAGCGCGCCATGAGCTTCGTGATCCAGGCGCTCGGCCCCGGCGACCGGCTGTCCGTCGTCACGTTCTCGTCGTCGGCGAGGAGGCTGTTCCCGCTGAGGAAGATGACGGAGTCCGGGCGGCAGCGCGCGTTGCAGAGGGTGAGCTCGCTCGTCGCCGACGGCGGCACCAACATCGCCGACGCGCTGAGGAAGGCGGCGAGGGTGATGGAGGACAGGAGGGAGAGGAACCCCGTGTGCAGCATCGTCCTCCTCTCCGACGGCCGGGACACCTACACCGTCCCGGTGCCGCGCGGCGGCGGCGGCGGCGGCGACCAGCCGGACTACGCCGTGCTCGTCCCGAGCTCGCTCCTTCCCGGTGGCGGGTCGGCGCGCCACGTGCAGCGCGCCACGGCGCGCGGCGACTCGACGGAGCTCACCAGCGTCATCCATACCTACCAGACGCCCTTCATGGTCGACATGCTGCAGCGCTCGCAGACGCTCCAGCCGGAGGTCGTCGTGGCGATGAGCCGCTCGGCGCCGCTACCGGCGCCGTCCCTGTCGCTGTCGCCGCCGCCGCCGCCGTCGCAGCTGCGGCGCCGCTCGGTGAGGCCGGCCATGTCGTTCCCCGGGCGGCGTTCGTGA
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| Protein seq | MAVAKWERAKRALATRLCVRAPRVRAAAAEAEGEGEEGEGRGRSVAASPPAHVASSRRLSRCGSRSSTKICAICLGGMCSGNGQALFTAECSHKFHFHCISSSVRHGNTVCPICRAVWKELPFQGPLPAAAAADASLLGTARVNPHPLDDRHQHQRMAVVRRLSRGDSVTRQWQLPIFRTLDGGIFDDDEQLDLHPAEDVVGTQDVDSIVADEMAPASVGITTYAAFPAMEESVMVEEFAVLIHLKAPSSPATVTSRAPIDLVTVLDVSWSMAGTKLALLKRAMSFVIQALGPGDRLSVVTFSSSARRLFPLRKMTESGRQRALQRVSSLVADGGTNIADALRKAARVMEDRRERNPVCSIVLLSDGRDTYTVPVPRGGGGGGDQPDYAVLVPSSLLPGGGSARHVQRATARGDSTELTSVIHTYQTPFMVDMLQRSQTLQPEVVVAMSRSAPLPAPSLSLSPPPPPSQLRRRSVRPAMSFPGRRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g32740 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0464500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0013730 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0013940 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0013430 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0013780 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0013630 | RBH | 0.0 | 0.000000 | 1.028128 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0284700 | RBH | 0.079545 | 2.4415625 | 0.039135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0013660 | RBH | 0.0 | 0.0 | 0.027875 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0306100 | RBH | 0.067243 | 6.097519 | 0.018133 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0013400 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0013270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0013650 | RBH | 0.0 | 2.875345 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0013360 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0013910 | RBH | 0.0 | 1.252451 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G013630 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0013570 | RBH | 0.0 | 0.000000 | 0.619667 |
