Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsCMeo_10g0013430		OGI:10054640 \| 14/16			CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)			Chr10:17578855-17583576		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		tcacgaacgccgcccggggaacgacatggccggcctcaccgagcggcgccgcagctgcgacggcggcggcggcggcggcggcgacagggacggcgccggtagcggcgccgagcggctcatcgccacgacgacctccggctggagcgtctgcgagcgctgcagcatgtcgaccatgaagggcgtctggtaggtatggatggcgctggtgagctccgtcgagtcgccgcgcgccgtggcgcgctgccacgagtgggagctcaggccggcgagcatgtaggcgcggccggactcctcgtaccgctgccgcgtctccaccctgtcctgcatctccctcagctccgccgccagcgccacggactgcgggtcgtcgtccgcccgcgactcgagcacgccgcggcgctcgtcgaggatggcggcggccagctcgaagtcgccccgctccgcggcggcgcgcgcggcggccatgtcctccgtggcctggacgcggtgcagctcccgctcgacctccggcgacatgccgtcgtagcccacgggggcgtccaccgtgcgagggacggtcaccgtgtcgcccccgacgcggacggtctccatggtggccgtgctccggtaggtgcagctcggcgtgatcagggcggacaccccgcgcgccgccgggacgcgcacggtgacgaggaagtccctctcctcgtcggcgtagaggtcgccgacgtcgacgaagccgccgcggccgtcgccgtccacgtggctcgcgtagccgcccgacctgacggaggtcagcagcacgccgtcgtcgccgcactcgacgctcagccgcagctcctgcgccaccacgctgagtaggccgccgatgcactgggcgaacgcgtcctggatcgagcccgccgcgtcgatgaacgagaacgtgccgccggacatctcagcgatggagtgcatcgccggcgagtcgtggtcggcgccgaagccgaaggcgtggacctgcacgtggcgcgccgacccgccaccgggaaggagcgagctcgggacgagcacggcgtagtccggctggtcgccgccgccgccgccgccgcgcggcaccgggacggtgtaggtgtcccggccgtcggagaggaggacgatgctgcacacggggttcctctccctcctgtcctccatcaccctcgccgccttcctcagcgcgtcggcgatgttggtgccgccgtcggcgacgagcgagctcaccctctgcaacgcgcgctgccgcccggactccgtcatcttcctcagcgggaacagcctcctcgccgacgacgagaacgtgacgacggacagccggtcgccggggccgagcgcctggatcacgaagctcatggcgcgcttcagcagcgccagcttcgtcccggccatgctccagctcacgtcgagcacggtgacgaggtcgatgggcgcgcgggaggtcaccgtcgccggagaagacggagccttcaggtggatcaacaccgcaaactcctcaaccatcacagactcctccatcgccgggaacgcagcgtacgtcgtgatcccaacagaagcaggcgccatttcatcagcgacgatcgaatcaacatcctgagttccaaccacatcttcagcaggatgaagatccaactgttcatcgtcatcgaaaatgccgccatccagcgtacgaaagatcgggagctgccattgccgggtcacgctgtctccgcgagacagcctgcggacaacggccattcgctgatgctgatgcctgtcatccagtgggtgagggttcactcgagctgttccaagaagactagcatctgctgctgctgctgcagggagagggccctggaacggcagctccttccacacggcgcggcaaatcgggcagacggtgttgccgtggcgaacgctggaggagatgcagtggaagtggaacttgtgggagcattccgcggtgaacaaggcttggccattgcctgaacacattcctccgaggcaaatggcacatatcttctgaaaaaagtaaccaagaaaagcaacagaagatagttagtaactgcagatcgatatagcaatcggcagagtggagtttctttgaaaaaaaaaacaccaattgaagttaaataaaaaatatgatccagattcatgctaacatgtaaagctttgttccctagaatgaactgtacttatttcacattacaaaatgaaggaatgagttgttttcaagagcatcagatattagcaatgactgaaaagagggaagggagcctaaataatagccaaattgtatgctcctagtgagtcttagagaaaactatagtagtatcaacaatgtcaactgtcatcagcatcagcacaagaggctaatgtccagtccaagtcatgcaatccaagtatacaaggcagactgtaagtcgtaaactactactattattaattaaacatcaagcaaaatagtcaactcatgcagccggaccctgatattatccagatgctgatagaagacacgaaatcgaattagatgcagctagtaaaacattacaaaagcacatcaatcgatgacattgatgtcagctatctgtgtgtctatcctttcattattcagctcacccctttctggaaaagtatgaagcacacagtatatggggcagagcacatatactctgaattataccatatgggccaatctttcaagaagcatccacatattctcaaatacatgctgtttgcagcagaggatcacttgaccaattattgataaccagaaaaggatgctggtctccccctctgatcctctccctgtctttagatcaatgttgatatctaagtcaaaccaaccaagatgctttgcagatcaattttaactatagcatgataaggcacataattagagatgacattcgtgcatgtgaaatcatgaagtggattgatttaattgccaattgctgaggtaaatcttatccagtaaactatgttgaccaaatgtcattttatttcaagtatattttagaagctccattggaatattaggacaacatgttatatgataaatataacaggctacctcatcacatactactacttgggaatatttttttgttaaaacgatccagtgttttgctcatcagagtgatgtcaagagctgaatttcctaaaaaaaaaaaggtttctgtaagccttatctcgtacatggcatcacccaactgatcaaagaaaaaacatgggctggaaagggaaagaaaacagtaggcttcaaaagatgaggagagagttggtgaacaagagaggtgtcctgcccttcctcggaattgcacacataattatacaacagaacaagcaatcaaaattttcgtccttttctagtcctaaataattaagaaactattgcatacttctccggttgcttactagcacacaacgcgctacattcatgataatttcaatggataaaaaaataaaaaaaacaaacataaaagtattaaacacgcgcaagaaattcaaatgcaagaatcaacccaaagaccaaaaaaatacagagaaaaggtccatgcaagcaaccgggcaagcagaattccctagaagtaaaaacaactaattcttttagatggcaatgtaccaatcaaagcagaaaggtattgcatggtagtacgatgttaagtagcaacgacgttttctccaggtttttggcacagtttaacatcgttggcatgatatggtgttgatctacaagacgatcaacgaaatcaggtaccccgacaaaaaccctgtctcagatgaaacacaagtagcacaagcttgggtatcataatgaaacaaaggatctgttgatttcggtgaaagatggcaaagggagcaaaataatgcagaacaacaattgtattcggcatcatctctactactttggaagtcatccttctccttcaccactacaattcaccatcatagttcctcatgtaaacaaaccaactctctaaaaaaaatctccccacccaaaaaccattgttctcacgcgaagattaacccgaaaatccagataggacatagcactattcttttttaaaaaaagatcaggcaaaagtttggccttcaggatcactgcagtttttctttttgtgacaaaaggcatatatcagcataagatggatatccctttacaaaaagaaatctgactaagtttcacaatgattccaaattgcagatatgattaaaatccccgcttacgtgcggggaacaaaaagaactagcgaacactgattaaagtgccgtgtttaccttacctaaaccctacaaagttatgctaatctaaacggatgcagccctcttgatcatgaatcattcgaacaaaaatatcgtatcaactttcttcaggcgtgtcctagaactactatcagatttcaaacatctcggttttaaacaagagcagttttacttctcacgagattaaaaaaataaaaaccgataaatccctatcaaaatcatcgggaggatcacacgagagtggggagagctggataaactgggcaaggcgatcgatctcaccgtggagctcctgctcccgcacctcgacagccgccgcgaggaggccacatgcgcgggcggcgaggcggccaccgacctccccctcccttccccctcctccccctccccctccgcctccgccgccgccgcccgcaccctcggcgcgcggacgcagagcctggtggcaagcgcgcgcttggcgcgctcccacttcgccaccgccat More
CDS seq		atggcggtggcgaagtgggagcgcgccaagcgcgcgcttgccaccaggctctgcgtccgcgcgccgagggtgcgggcggcggcggcggaggcggagggggagggggaggagggggaagggagggggaggtcggtggccgcctcgccgcccgcgcatgtggcctcctcgcggcggctgtcgaggtgcgggagcaggagctccacgaagatatgtgccatttgcctcggaggaatgtgttcaggcaatggccaagccttgttcaccgcggaatgctcccacaagttccacttccactgcatctcctccagcgttcgccacggcaacaccgtctgcccgatttgccgcgccgtgtggaaggagctgccgttccagggccctctccctgcagcagcagcagcagatgctagtcttcttggaacagctcgagtgaaccctcacccactggatgacaggcatcagcatcagcgaatggccgttgtccgcaggctgtctcgcggagacagcgtgacccggcaatggcagctcccgatctttcgtacgctggatggcggcattttcgatgacgatgaacagttggatcttcatcctgctgaagatgtggttggaactcaggatgttgattcgatcgtcgctgatgaaatggcgcctgcttctgttgggatcacgacgtacgctgcgttcccggcgatggaggagtctgtgatggttgaggagtttgcggtgttgatccacctgaaggctccgtcttctccggcgacggtgacctcccgcgcgcccatcgacctcgtcaccgtgctcgacgtgagctggagcatggccgggacgaagctggcgctgctgaagcgcgccatgagcttcgtgatccaggcgctcggccccggcgaccggctgtccgtcgtcacgttctcgtcgtcggcgaggaggctgttcccgctgaggaagatgacggagtccgggcggcagcgcgcgttgcagagggtgagctcgctcgtcgccgacggcggcaccaacatcgccgacgcgctgaggaaggcggcgagggtgatggaggacaggagggagaggaaccccgtgtgcagcatcgtcctcctctccgacggccgggacacctacaccgtcccggtgccgcgcggcggcggcggcggcggcgaccagccggactacgccgtgctcgtcccgagctcgctccttcccggtggcgggtcggcgcgccacgtgcaggtccacgccttcggcttcggcgccgaccacgactcgccggcgatgcactccatcgctgagatgtccggcggcacgttctcgttcatcgacgcggcgggctcgatccaggacgcgttcgcccagtgcatcggcggcctactcagcgtggtggcgcaggagctgcggctgagcgtcgagtgcggcgacgacggcgtgctgctgacctccgtcaggtcgggcggctacgcgagccacgtggacggcgacggccgcggcggcttcgtcgacgtcggcgacctctacgccgacgaggagagggacttcctcgtcaccgtgcgcgtcccggcggcgcgcggggtgtccgccctgatcacgccgagctgcacctaccggagcacggccaccatggagaccgtccgcgtcgggggcgacacggtgaccgtccctcgcacggtggacgcccccgtgggctacgacggcatgtcgccggaggtcgagcgggagctgcaccgcgtccaggccacggaggacatggccgccgcgcgcgccgccgcggagcggggcgacttcgagctggccgccgccatcctcgacgagcgccgcggcgtgctcgagtcgcgggcggacgacgacccgcagtccgtggcgctggcggcggagctgagggagatgcaggacagggtggagacgcggcagcggtacgaggagtccggccgcgcctacatgctcgccggcctgagctcccactcgtggcagcgcgccacggcgcgcggcgactcgacggagctcaccagcgccatccatacctaccagacgcccttcatggtcgacatgctgcagcgctcgcagacgctccagccggaggtcgtcgtggcgatgagccgctcggcgccgctaccggcgccgtccctgtcgccgccgccgccgccgccgccgtcgcagctgcggcgccgctcggtgaggccggccatgtcgttccccgggcggcgttcgtga More
Protein seq		MAVAKWERAKRALATRLCVRAPRVRAAAAEAEGEGEEGEGRGRSVAASPPAHVASSRRLSRCGSRSSTKICAICLGGMCSGNGQALFTAECSHKFHFHCISSSVRHGNTVCPICRAVWKELPFQGPLPAAAAADASLLGTARVNPHPLDDRHQHQRMAVVRRLSRGDSVTRQWQLPIFRTLDGGIFDDDEQLDLHPAEDVVGTQDVDSIVADEMAPASVGITTYAAFPAMEESVMVEEFAVLIHLKAPSSPATVTSRAPIDLVTVLDVSWSMAGTKLALLKRAMSFVIQALGPGDRLSVVTFSSSARRLFPLRKMTESGRQRALQRVSSLVADGGTNIADALRKAARVMEDRRERNPVCSIVLLSDGRDTYTVPVPRGGGGGGDQPDYAVLVPSSLLPGGGSARHVQVHAFGFGADHDSPAMHSIAEMSGGTFSFIDAAGSIQDAFAQCIGGLLSVVAQELRLSVECGDDGVLLTSVRSGGYASHVDGDGRGGFVDVGDLYADEERDFLVTVRVPAARGVSALITPSCTYRSTATMETVRVGGDTVTVPRTVDAPVGYDGMSPEVERELHRVQATEDMAAARAAAERGDFELAAAILDERRGVLESRADDDPQSVALAAELREMQDRVETRQRYEESGRAYMLAGLSSHSWQRATARGDSTELTSAIHTYQTPFMVDMLQRSQTLQPEVVVAMSRSAPLPAPSLSPPPPPPPSQLRRRSVRPAMSFPGRRS
Function		E3 ubiquitin-protein ligase WAV3 [UniProtKB/Swiss-Prot:Q9LTA6]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsCMeo_10g0013430	OsCMeo_10g0013430.01	Chr10	17578855	17583576	-	NAM
CDS seq	atggcggtggcgaagtgggagcgcgccaagcgcgcgcttgccaccaggctctgcgtccgcgcgccgagggtgcgggcggcggcggcggaggcggagggggagggggaggagggggaagggagggggaggtcggtggccgcctcgccgcccgcgcatgtggcctcctcgcggcggctgtcgaggtgcgggagcaggagctccacgaagatatgtgccatttgcctcggaggaatgtgttcaggcaatggccaagccttgttcaccgcggaatgctcccacaagttccacttccactgcatctcctccagcgttcgccacggcaacaccgtctgcccgatttgccgcgccgtgtggaaggagctgccgttccagggccctctccctgcagcagcagcagcagatgctagtcttcttggaacagctcgagtgaaccctcacccactggatgacaggcatcagcatcagcgaatggccgttgtccgcaggctgtctcgcggagacagcgtgacccggcaatggcagctcccgatctttcgtacgctggatggcggcattttcgatgacgatgaacagttggatcttcatcctgctgaagatgtggttggaactcaggatgttgattcgatcgtcgctgatgaaatggcgcctgcttctgttgggatcacgacgtacgctgcgttcccggcgatggaggagtctgtgatggttgaggagtttgcggtgttgatccacctgaaggctccgtcttctccggcgacggtgacctcccgcgcgcccatcgacctcgtcaccgtgctcgacgtgagctggagcatggccgggacgaagctggcgctgctgaagcgcgccatgagcttcgtgatccaggcgctcggccccggcgaccggctgtccgtcgtcacgttctcgtcgtcggcgaggaggctgttcccgctgaggaagatgacggagtccgggcggcagcgcgcgttgcagagggtgagctcgctcgtcgccgacggcggcaccaacatcgccgacgcgctgaggaaggcggcgagggtgatggaggacaggagggagaggaaccccgtgtgcagcatcgtcctcctctccgacggccgggacacctacaccgtcccggtgccgcgcggcggcggcggcggcggcgaccagccggactacgccgtgctcgtcccgagctcgctccttcccggtggcgggtcggcgcgccacgtgcaggtccacgccttcggcttcggcgccgaccacgactcgccggcgatgcactccatcgctgagatgtccggcggcacgttctcgttcatcgacgcggcgggctcgatccaggacgcgttcgcccagtgcatcggcggcctactcagcgtggtggcgcaggagctgcggctgagcgtcgagtgcggcgacgacggcgtgctgctgacctccgtcaggtcgggcggctacgcgagccacgtggacggcgacggccgcggcggcttcgtcgacgtcggcgacctctacgccgacgaggagagggacttcctcgtcaccgtgcgcgtcccggcggcgcgcggggtgtccgccctgatcacgccgagctgcacctaccggagcacggccaccatggagaccgtccgcgtcgggggcgacacggtgaccgtccctcgcacggtggacgcccccgtgggctacgacggcatgtcgccggaggtcgagcgggagctgcaccgcgtccaggccacggaggacatggccgccgcgcgcgccgccgcggagcggggcgacttcgagctggccgccgccatcctcgacgagcgccgcggcgtgctcgagtcgcgggcggacgacgacccgcagtccgtggcgctggcggcggagctgagggagatgcaggacagggtggagacgcggcagcggtacgaggagtccggccgcgcctacatgctcgccggcctgagctcccactcgtggcagcgcgccacggcgcgcggcgactcgacggagctcaccagcgccatccatacctaccagacgcccttcatggtcgacatgctgcagcgctcgcagacgctccagccggaggtcgtcgtggcgatgagccgctcggcgccgctaccggcgccgtccctgtcgccgccgccgccgccgccgccgtcgcagctgcggcgccgctcggtgaggccggccatgtcgttccccgggcggcgttcgtga More
Protein seq	MAVAKWERAKRALATRLCVRAPRVRAAAAEAEGEGEEGEGRGRSVAASPPAHVASSRRLSRCGSRSSTKICAICLGGMCSGNGQALFTAECSHKFHFHCISSSVRHGNTVCPICRAVWKELPFQGPLPAAAAADASLLGTARVNPHPLDDRHQHQRMAVVRRLSRGDSVTRQWQLPIFRTLDGGIFDDDEQLDLHPAEDVVGTQDVDSIVADEMAPASVGITTYAAFPAMEESVMVEEFAVLIHLKAPSSPATVTSRAPIDLVTVLDVSWSMAGTKLALLKRAMSFVIQALGPGDRLSVVTFSSSARRLFPLRKMTESGRQRALQRVSSLVADGGTNIADALRKAARVMEDRRERNPVCSIVLLSDGRDTYTVPVPRGGGGGGDQPDYAVLVPSSLLPGGGSARHVQVHAFGFGADHDSPAMHSIAEMSGGTFSFIDAAGSIQDAFAQCIGGLLSVVAQELRLSVECGDDGVLLTSVRSGGYASHVDGDGRGGFVDVGDLYADEERDFLVTVRVPAARGVSALITPSCTYRSTATMETVRVGGDTVTVPRTVDAPVGYDGMSPEVERELHRVQATEDMAAARAAAERGDFELAAAILDERRGVLESRADDDPQSVALAAELREMQDRVETRQRYEESGRAYMLAGLSSHSWQRATARGDSTELTSAIHTYQTPFMVDMLQRSQTLQPEVVVAMSRSAPLPAPSLSPPPPPPPSQLRRRSVRPAMSFPGRRS More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_10g0464500	RBH	0.000000	0.000000	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os10g32740	RBH	0.000000	0.000000	0.000000
Nipponbare \| IRGSP 1.0 \| RAP-db	Os10g0464500	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_10g0013730	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_10g0013940	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_03g0003270	RBH	0.0	0.0	2.787703
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_10g0013780	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_10g0013630	RBH	0.0	0.000000	1.028128
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_10G0284700	SBH	0.079545	2.4415625	0.039135
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_10g0013660	RBH	0.0	0.0	0.027875
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_10G0306100	RBH	0.067243	6.097519	0.018133
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_10g0013400	RBH	0.0	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_10g0013270	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_10g0013650	RBH	0.0	2.875345	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_10g0013360	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_10g0013910	RBH	0.0	1.252451	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_10G013630	RBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_10g0013570	RBH	0.0	0.000000	0.619667

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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