Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0436800 | OGI:10050220 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:15601124-15604281 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCGCACTCCACCTCCCCGAGACGCGACGCGAGCACGAGCAGCGCGGCGGCCCAACTCCCGAGGTGGTGTAAAGCCTTCTCCTCTCCGCTACCTTCTTCCAAGATCGCGTTCCTGCTCTCTGAATTCGCGGTCAGTCCGGGGTGGGGCGCGCGAGTTCTTGCCTCAGATCCGCGGCGGCTCGGTTTCTGTTGCGGAATTGTCTAAGATTTGCGGGGGTGTTTGTTTGCTGCTGAATTGCCGGGTGTTTGTGATTCGTTGGCTGCAGCTTGCTTTCTTGGGGGGCGCCGCCGCGGCGGAGTTGGGTTTGACCGGCCGGTGATGGGGAAGGGCGGCGGCTGCGTCCCCAGCAAGAAGCGGCAGCCGCCGGCCAGCACCGTCGCCGGCGCGCCGTCGTCGTCGTCGGCGCCGCGCGACGCCCCCGAGGCGGAGGCGTCGGGGGAGGCGGCCGGGGGGCGGCGGAGGCTGCGGCTGTACATCGTGTTCTACTCGATGTACGGGCACGTGGAGGCGCTGGCGCGGCGGGCGGCGGCGGGCGTCGCGGCGGTGGACGGGGTGGAGGCGGTGCTGCGGCGCGTCCCCGAGACGCTCCCGCCGGGCGTGCTGGAGAAGATGCAGGCGCCGGCCAAGGACCCCGCCGTCCCGGTCATCGCGGCGGCGGCGGACCTGGAGGAGGCCGACGGGGTGCTGTTCGGGTTCCCGACGAGGTACGGCGCCATGGCCGCGCAGATGAAGGCGTTCTTCGACTCCACCGGCTCCCTCTGGGAGAAGCAGAAGCTCGCCGGAAAGCCCGCCGGGTTCTTCGTCAGCACCGGCACGCAGGGAGGCGGCCAGGAGACCACCGCGTAAGCATCTCATCTGCTTTTCTTCAGAAATGGATTAATTAAGCTGCTAATCATATCATCTTTATATTAGTGCTTGCTATCATGGATAGTAGTGATTGATTCTTTAAAGTGGACTGGATTAGACCACTTCCTTTTCCATTCATAAGATTATCTAGTTCTTGGGATAAGAAATGACATATACTAGGTGTTTTAGATGTTGAACTGAACCTTGAATGCTGTTGTTTCTACTCAGTTCAAATTTGAACATACCCCTCATCAGTGGACTGTTTTTTTTTTTTTGGGTTAGTGCTGAGTGCTTGCAACCACTTTGTTGGTTGGTGATATAGCATATGTTCTGTATTGGCAGTAATTTAGGCACTAACTGTTTCTCTTCTTCTCTTTTTTTCCCCTTTTTGGTTCAATATCATAGGTTTAATTTTTTAATTGTTCCTTCACTCCAATTTTCAGCATGATGCTTGCTGTTGCACTCAATCTGTCTCTGTTCAGTGAGCGTGTGCGTTTACCTCTAGGACAGATTTATAAGTCAAATATAGTAGGTGAGGATATCTGAGATTGAAAGGGGTTCCAATAAATATCAGTCAAATTGCACCTATCTTGACAAATTTCAAGTAATTCGCCCTGGGGGCATCAGCAAGTTAATGTCACATACTAAGATGTCCTTGTCATGGTGCGTTACCAATTGTTTGGTAGTTCCAAATTGTGGAAACGAGGTCTTATTCTTGTGGCTGTTCAAAATCCTTACGCACTACTTCCTCAATAATTAATAGCCATGATTCTGTACTGTGAGACTATTAACAACAAAGGTAGTGTGGTCATGGATGCATTTATGAATAGCAGGATATTGAAGATGATTTGTACAAAAAGAGATCTTGATTTAATGCACAGCATGCATAGCATCTTGTTCTCTAGCTGATCAGGATCTGCTGTACTCCGGCTCAACTCAGGTGCTGTCCTAAGCATTTGGATATGAAATTCATAACCAATTGATGGAGGTAGTGGGTACAACACAATATTTAGTAGTATCTGTGAAAATTTTGGATTTATCATTTTCAAACCCAGTTGGGAATTCAGTTCTTGCCTCGATCAAAATATTTAATCCACTTCTTACACGCCAAGTGTGAGGAAAATAGCCATTCACTTGTTTCAACCCTTCTTGATTTTGAGATAAAAATGATGATCTTCATCATGGCATTTGGACATGTATAAGAATTAGAAGATGTGTCACAGTTATAGTACTGTTCTTTCTGCTCTTTTGCCAGGCTATGGTTCCTTTTATTGGTTTATATGTCTATACCACCCAACATTTTTTTTCAAAGAAGCATTTTAGGTTAATATTTATTTTATAATGAAAGTTTATTGTGGTGGTTTTATTACTGCTGAGAAATGGAGAATACCAACAAAAATTCTAGAGGGAGGGAGAGGTATATAGGCTTTAATTTGGTGGATCTAAGTTAAAGGCCCAGATATGATAGTTGTTTATATATTGATTTTCTGAAAGAACCACATCTCAATCCTGTCACTTAGGGAGATTTCAAATAAGTTGGCACTAATTCAACAGAATATAATATCCCAAATTTAGATTCCGTTTGCAGAAGATAATTTTAATTCACTTCACAATTTGCACAGGGCAATCAGCTAGTTTACTAAGAATAACATGTATACTGCTATTTTGCTTCTCAGTTTAAGTTGGTTTTGAAGTCTATCTTCACCCTGCTATTGCTGACCATGCTTCTCTGTTCATTTTAGTTGGACGGCAATCACCCAGATAGTGCACCATGGAATGCTCTTTGTCCCGATTGGCTACACCTTCGGGTCAGGCATGTTCAAGATGGATGAGATCAGAGGAGGCAGCCCCTATGGCGCTGGCGTCTTCGCTGGTGATGGCAGCAGACAGCCCAGCGAGACGGAGCTCGCCCTAGCCGAGCACCAGGGCAAGTACATGGCCTCCATAGTGAAGAAGCTTGCCCAGGCTTGAGCCTAGAAGAAGTTGAATCCTCCCACGACGCCACTGTGCAGTCCAAACTCCACACGATCGTCCAGTCGCCATTGATTTCCCCCTATTGGTTTTTCTTCTTCTATATGTAATGTGCACAGCCTGATGATCCTCAGATCGTCGTCGTATTTGTTCGTCACAGATTTATCTGTAAATTGTTGACATAAAACATTGTTTGGTGTCCAGTTGAACACTAAGTGTGCCATACGGTGTTGATCGAAATAACATACATCACTTGCCATAGATTTGTTATGCAGAACTCTGTTTCTGTATCCAGAACTTTGTTTCTGTATCATGAATGAAGGGAATGCACATGCTTGTAC
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| CDS seq | ATGGGGAAGGGCGGCGGCTGCGTCCCCAGCAAGAAGCGGCAGCCGCCGGCCAGCACCGTCGCCGGCGCGCCGTCGTCGTCGTCGGCGCCGCGCGACGCCCCCGAGGCGGAGGCGTCGGGGGAGGCGGCCGGGGGGCGGCGGAGGCTGCGGCTGTACATCGTGTTCTACTCGATGTACGGGCACGTGGAGGCGCTGGCGCGGCGGGCGGCGGCGGGCGTCGCGGCGGTGGACGGGGTGGAGGCGGTGCTGCGGCGCGTCCCCGAGACGCTCCCGCCGGGCGTGCTGGAGAAGATGCAGGCGCCGGCCAAGGACCCCGCCGTCCCGGTCATCGCGGCGGCGGCGGACCTGGAGGAGGCCGACGGGGTGCTGTTCGGGTTCCCGACGAGGTACGGCGCCATGGCCGCGCAGATGAAGGCGTTCTTCGACTCCACCGGCTCCCTCTGGGAGAAGCAGAAGCTCGCCGGAAAGCCCGCCGGGTTCTTCGTCAGCACCGGCACGCAGGGAGGCGGCCAGGAGACCACCGCTTGGACGGCAATCACCCAGATAGTGCACCATGGAATGCTCTTTGTCCCGATTGGCTACACCTTCGGGTCAGGCATGTTCAAGATGGATGAGATCAGAGGAGGCAGCCCCTATGGCGCTGGCGTCTTCGCTGGTGATGGCAGCAGACAGCCCAGCGAGACGGAGCTCGCCCTAGCCGAGCACCAGGGCAAGTACATGGCCTCCATAGTGAAGAAGCTTGCCCAGGCTTGA
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| Protein seq | MGKGGGCVPSKKRQPPASTVAGAPSSSSAPRDAPEAEASGEAAGGRRRLRLYIVFYSMYGHVEALARRAAAGVAAVDGVEAVLRRVPETLPPGVLEKMQAPAKDPAVPVIAAAADLEEADGVLFGFPTRYGAMAAQMKAFFDSTGSLWEKQKLAGKPAGFFVSTGTQGGGQETTAWTAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSETELALAEHQGKYMASIVKKLAQA |
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| Function | Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 [UniProtKB/Swiss-Prot:O23207] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0436800 | OsNip_10t0436800-01 | Chr10 | 15601210 | 15604281 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGGAAGGGCGGCGGCTGCGTCCCCAGCAAGAAGCGGCAGCCGCCGGCCAGCACCGTCGCCGGCGCGCCGTCGTCGTCGTCGGCGCCGCGCGACGCCCCCGAGGCGGAGGCGTCGGGGGAGGCGGCCGGGGGGCGGCGGAGGCTGCGGCTGTACATCGTGTTCTACTCGATGTACGGGCACGTGGAGGCGCTGGCGCGGCGGGCGGCGGCGGGCGTCGCGGCGGTGGACGGGGTGGAGGCGGTGCTGCGGCGCGTCCCCGAGACGCTCCCGCCGGGCGTGCTGGAGAAGATGCAGGCGCCGGCCAAGGACCCCGCCGTCCCGGTCATCGCGGCGGCGGCGGACCTGGAGGAGGCCGACGGGGTGCTGTTCGGGTTCCCGACGAGGTACGGCGCCATGGCCGCGCAGATGAAGGCGTTCTTCGACTCCACCGGCTCCCTCTGGGAGAAGCAGAAGCTCGCCGGAAAGCCCGCCGGGTTCTTCGTCAGCACCGGCACGCAGGGAGGCGGCCAGGAGACCACCGCTTGGACGGCAATCACCCAGATAGTGCACCATGGAATGCTCTTTGTCCCGATTGGCTACACCTTCGGGTCAGGCATGTTCAAGATGGATGAGATCAGAGGAGGCAGCCCCTATGGCGCTGGCGTCTTCGCTGGTGATGGCAGCAGACAGCCCAGCGAGACGGAGCTCGCCCTAGCCGAGCACCAGGGCAAGTACATGGCCTCCATAGTGAAGAAGCTTGCCCAGGCTTGA
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| Protein seq | MGKGGGCVPSKKRQPPASTVAGAPSSSSAPRDAPEAEASGEAAGGRRRLRLYIVFYSMYGHVEALARRAAAGVAAVDGVEAVLRRVPETLPPGVLEKMQAPAKDPAVPVIAAAADLEEADGVLFGFPTRYGAMAAQMKAFFDSTGSLWEKQKLAGKPAGFFVSTGTQGGGQETTAWTAITQIVHHGMLFVPIGYTFGSGMFKMDEIRGGSPYGAGVFAGDGSRQPSETELALAEHQGKYMASIVKKLAQA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0436800 | OsNip_10t0436800-02 | Chr10 | 15601124 | 15604199 | + | IsoSeq | ||
| CDS seq | TCGCACTCCACCTCCCCGAGACGCGACGCGAGCACGAGCAGCGCGGCGGCCCAACTCCCGAGGTGGTGTAAAGCCTTCTCCTCTCCGCTACCTTCTTCCAAGATCGCGTTCCTGCTCTCTGAATTCGCGCTTGCTTTCTTGGGGGGCGCCGCCGCGGCGGAGTTGGGTTTGACCGGC |
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| Protein seq | SHSTSPRRDASTSSAAAQLPRWCKAFSSPLPSSKIAFLLSEFALAFLGGAAAAELGLTG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.956556 | 4.169875 | 4.368933 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0436800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012000 | SBH | 0.485570 | 13.911299 | 0.826708 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012210 | SBH | 0.415314 | 7.433332 | 1.322486 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011920 | SBH | 1.532060 | 11.615798 | 3.744941 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011910 | SBH | 18.236919 | 7.412986 | 21.017542 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011660 | SBH | 1.269611 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012090 | RBH | 2.802197 | 7.405504 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0011670 | SBH | 0.213935 | 0.0 | 0.136141 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0012160 | SBH | 0.325402 | 2.692813 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012040 | SBH | 0.060474 | 1.653098 | 0.705441 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
