Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0430750 | OGI:10049600 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:15331798-15332474 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCGGGAAGGTCGAAGGAGGCCAACCGAGTATATTAAGAAGGAATAAAAGTTACAAGAGAAAAAACATCAAAATGCACCAAGGTGCATTGCCACACACCATGCGCTACCACCCAAGCACAAACCGCTGAGGGTGAAACCTAGCACCAAACGACCCCCGTTGAGCGTGGCCGAACGCCGCTAGGCCTACAGCAACACCACAGAGACGAGGCTCCGAAAACGATGCCACCATGGTGGTCACGACATCCAGGATGCTGCCATCGCCCATCAAAAAAGATGTAGTTTTCACCCAGAGAAGCTCGCCAAGAAAGGGAGAGGGTAACCCTCGACAACGCTCCAAGGAGATTACGACGCCCGAAGACGTAGCCGCTGCCGGCCCGGTGAACCACCGGACTAGGCTTTCGCCTGGGGCCCTACAACCTTGACTGCAGATCGCCGTCCACCAACTCAGAACCACCACACAGACAAATGGCAGCACGTGGCATCCACCACACCGCACCGACGCCCCTCCGTCGGGCGACTTCAACGAACCACCACCCCTGAAAGCTGGCCCAGGACTCCTCCGTTCCACCACCCGCCGGCCGCCTCGCCAGATTTGGCCGAAGGAGAACCCGGGACTAGGTGGCATTGCTTCGGCAGCCTGAGCTTCCCCCACTGACGAGCTGCCGCCTCAATCCAA
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| CDS seq | ATGCCACCTAGTCCCGGGTTCTCCTTCGGCCAAATCTGGCGAGGCGGCCGGCGGGTGGTGGAACGGAGGAGTCCTGGGCCAGCTTTCAGGGGTGGTGGTTCGTTGAAGTCGCCCGACGGAGGGGCGTCGGTGCGGTGTGGTGGATGCCACGTGCTGCCATTTGTCTGTGTGGTGGTTCTGAGTTGGTGGACGGCGATCTGCAGTCAAGGTTGTAGGGCCCCAGGCGAAAGCCTAGTCCGGTGGTTCACCGGGCCGGCAGCGGCTACGTCTTCGGGCGTCGTAATCTCCTTGGAGCGTTGTCGAGGGTTACCCTCTCCCTTTCTTGGCGAGCTTCTCTGGGTGAAAACTACATCTTTTTTGATGGGCGATGGCAGCATCCTGGATGTCGTGACCACCATGGTGGCATCGTTTTCGGAGCCTCGTCTCTGTGGTGTTGCTGTAGGCCTAGCGGCGTTCGGCCACGCTCAACGGGGGTCGTTTGGTGCTAGGTTTCACCCTCAGCGGTTTGTGCTTGGGTGGTAG
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| Protein seq | MPPSPGFSFGQIWRGGRRVVERRSPGPAFRGGGSLKSPDGGASVRCGGCHVLPFVCVVVLSWWTAICSQGCRAPGESLVRWFTGPAAATSSGVVISLERCRGLPSPFLGELLWVKTTSFLMGDGSILDVVTTMVASFSEPRLCGVAVGLAAFGHAQRGSFGARFHPQRFVLGW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0430750 | OsNip_10t0430750-00 | Chr10 | 15331798 | 15332474 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCACCTAGTCCCGGGTTCTCCTTCGGCCAAATCTGGCGAGGCGGCCGGCGGGTGGTGGAACGGAGGAGTCCTGGGCCAGCTTTCAGGGGTGGTGGTTCGTTGAAGTCGCCCGACGGAGGGGCGTCGGTGCGGTGTGGTGGATGCCACGTGCTGCCATTTGTCTGTGTGGTGGTTCTGAGTTGGTGGACGGCGATCTGCAGTCAAGGTTGTAGGGCCCCAGGCGAAAGCCTAGTCCGGTGGTTCACCGGGCCGGCAGCGGCTACGTCTTCGGGCGTCGTAATCTCCTTGGAGCGTTGTCGAGGGTTACCCTCTCCCTTTCTTGGCGAGCTTCTCTGGGTGAAAACTACATCTTTTTTGATGGGCGATGGCAGCATCCTGGATGTCGTGACCACCATGGTGGCATCGTTTTCGGAGCCTCGTCTCTGTGGTGTTGCTGTAGGCCTAGCGGCGTTCGGCCACGCTCAACGGGGGTCGTTTGGTGCTAGGTTTCACCCTCAGCGGTTTGTGCTTGGGTGGTAG
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| Protein seq | MPPSPGFSFGQIWRGGRRVVERRSPGPAFRGGGSLKSPDGGASVRCGGCHVLPFVCVVVLSWWTAICSQGCRAPGESLVRWFTGPAAATSSGVVISLERCRGLPSPFLGELLWVKTTSFLMGDGSILDVVTTMVASFSEPRLCGVAVGLAAFGHAQRGSFGARFHPQRFVLGW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.421264 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0558566 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35424 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0430750 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016280 | RBH | 0.676248 | 1.209810 | 0.303384 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015670 | RBH | 0.0 | 0.0 | 1.146782 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016010 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0417900 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015900 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0428400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015660 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015540 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015800 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
