Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0391300 | OGI:10043590 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:13018805-13023203 | ||||||||
| Gene Symbol | C3H62, OsC3H62 | ||||||||||
| DNA seq | GTTGACTCGCTTGTCCAACCAGATTACTCACCCAAAAGACATAGTTTTTCCCCTCTCAATTGTCAAGCATCGCATCAAAGTATTGCACTTAAGTTTACTACCTCAAATCATGCATAAATTTGCAGTTTTCCCCATACGGGCACCATCCCTGTTGTTGATAAATGAAGCATGGCTTCCATGGTCGAAACCTCTGGGGATTCTGGTTATGATTCTGCCTGTCATGGTACTGGTTTCCGTTCATTCCCTGGCGACCATGGTAATTCTGATGATGGTTCTGTTGGTGATGATACTGATCTTGAGACATTTGCCTGTGACCATAATAATTCTGATGATGGTTCTGTTGGTGATGATAACTCTGGTCCTCCCAATGGTAATCCTGGTTTCTTGACCTGAGAGGTTGATGCGTTTCGCGATCGACACGAGCCTGGTGATGACCAGAGCCATTGGAACCATGTTGGTATGTCTTTGCCTTCTGAGTGAAAGGCTGGAAGGCTGGTTTATCATGGTCTGTAGAGCCCCAATTGTTACTCTGACGATCCATGAAGCCTGTTCTTGAAGTACTTGTCCCGCCCTGCTGCCAAAACGCTTCATTCCTGTATTGATGATTAGGAGGTTGCTGCTGTGTGTAAGAGACTGCTTGCTGTGGAGTAGGAGTAGGAGTAGGTCTTGAAGATATCTCCTGCCGCCTCATGTTCTCTGATCCTCCATGTTGTCTGGATGGAGGAGCCTGGTGATTGGTAAAATCTTGTCTGGCAGCTGATGTTTGGGATACTGCAGCCCTTTGCTCTTGCGAAGGAGGAACCCGCGGAAGCGCTTGATTGTGGTGTTGATGTTTGGGATACTGCTGTGGGTATGCAGAACTTTGCTGTATAGGAGCAGGCTTGATTGATTTTGGCGGCTGCTGCTGCTGCTGCTGCTGTGTTGTTTCCACTTTTACGGCATGTTGGAGGGAAGGAGCCTGATGGTTAATGAGCTGCGTTGTGCTAGTTCTTGATGTTCCCTTTTGGAGAAGCACTTCGTTGTGTTGTTGAGGATGAGGGAACTGTGGCAGGTAATGGAGCAATTGCTCTGTGGGAGTTTGCTTTGATGATAAATGTTGCTGACTTGAGTTCCCAGATTCACCATGTTGGAGTGAAGGAATTATCTTCTCAGCTCTAGTACATGAAAGACACGCATTAGAGAAATGACAGCATAATTTTAGATGTAAAATAACAGAGAATTCCCTGCATGCATTTTCTTTCCTATGTAAATCTCATATTTAGATGGCAATGCACAACAGTAATCCTGACAAAAAATATACTACAATGAAGCAAAATCACACTTTTTCTAACATGAGAAAGTGATAGCATTCAGAAGTACCTTTTCTGAACAGTATTCGTAGTCACCGTATGTTGCGGAAAAACCGCTTGAGATGATTTTTTATTCATGTTGTCCTGTCCTTTGCTCTTGTTTTCCTTGTTCCTATTAATCATAACAACATTTTGAGAAGTCAAAAGTTTTCTTTTACAATGATATGAACTCTGATCACAAATTTAAGATGTAGTAGATAATTAAATAATGCTACTGACGAGAGGAAAAAATCATAGCATGTGCTACCATTCTGATTTAGTTAAGTTTCAGAGAAAGTGCTGTAGAAAATTAGGACACATGGCTGGGATCTCCAAAAAAAAGCAGTTAGATTTCTTGATCAGTCATATGTTTGATATATCCTAGCACCATGACCAACACATTGTAACTAGAAATCTAGAATCAGCTCAAACTTTCTAATTAGTCTACTGTCTACTTGCATCTTCCCAATCAGAATCTATTTCCAATGTTTAAACAATGGACTGGATGTAAACTTCATAAGCAGGATGAGATGATCTCAAAGTAGCAAATTTTCATGCTGGTTCTGAACAGAATATTTTCTCTCTTTTGGCCCTTAAATGATATGACCTGTTACCATAGTTTTTTGAACAGAAGAATTCATTGAGATGCATACACACCATGACAAAGGTTTATATTATAATCATCACTAACGCATGTCACAGTTAATAGGCTTACCTATTTAATCTCCTCATCCGTTCATTCTCTTTGTCCTTAATCCTGACTTCCCTTGTCTTACGTGCCACATACCCTCTTGCATGTTTTTCTTGGAGGGCTCTGTTTCTTTCCTCTTCATCAAGCCATGGCTGTGAGTGTAACAGAAATTAGCTTCAATAATTAAGTCCTGCTTTCCCTAAGACAAAATGAACCTTTAAGAACACACCTGTCTCATGGTCTTATCCTTGTAGAGATTTCTACCCTTTATGAGGAGTGGATGGAGGGGAGGCCATGGTTTGTACCCCCTACTCCATAAAATCTCAATCTGCATTTGCATATTTCTCTGTTGGTTTTAAGCGGTCTATGATGATTATTGTAGCTTAAGGCAAAAACTTATGCTGGTAAAAAGAAGTAAGAATTTACAGTGAACGTGTGCTGTTGCTTCTTAGTGCCATAGCTTTCTTTGATTATTCGACCTGCATTTGTCCTTTGACCACATAAATGACCCTTGACACCACGAGGAGCTCCTTTTTTCCTGCAGTGATAATCAACAGCCAAAGTAAAAAGGACATTATATATAAATATTGTGATTGGAGAATCATGCCCATCACTTCAGTAAATTAACACTCTGCCTAATATCCATTACCTTTTGTAAATATTTTGCTCAAAGACCACAACATCACCTTTGCATGAATCACCTATGATATTTAAGGGGTGCATAAGAAGGCAAAAAGTTAGAGCTTAAACAGTCCAAACTGTAGAAAGAAAAAAAAGGTATTGCAAATGAAAATGCCATTAAATTATGTATTCGAGAACTACAACTCTACCAGAAGACCAGAACTATACTTCAACGTGGGCGGTGTTATTTCAGACAACCTTAAGTGCATGAACTACGGACTATCCATTAACTGAAACAAGTTTAGAAAGCTTTCTAATTTTCTTGTCATTCATATCACTGTGAAACTATAGCATGAATGTTAGACTGATCACCTTGACAGTTCAAAACAAAACTTGACACTGGATACTTCACCTCTCCCATAGTTTTCACCCTGGTTTTGAAGCACAAGAAAGTGGTCAAACAAAAGCAGTTCATTTGCATTACAAAATATCAACAAAGTTGACAAGTAACATATAAAGAAGAAGGACAGATTACATAAAGGATATAGTTCATACTCAATTTGTCCTCTGATGCGAGTTAGGAGCACTTCCTTGTTGCCTGACAATCTTAGCTTGTGCATCCTCAAATATGCTTTGCATTCATAAACCTTTAGTTTCTCCAACTGGCCATCTGTGAATTGCAATAGCACATCACTCATATGATCAACAATAAGAATATGTGATGACCAGTAACAACATGGAAATTTACTATTTCGATAATGTACCCCATGAAACTGTAGCAATGCTAAGATACAGTTTCTGCAAACAATTTGTCTGCTTCGGCTTAAAATTACATTAAGAAATGAAGGTTTACCTGAAAGAGCTAAAACATGACGATTCTAAAATTGTACTACTGATCAAATTTCTTTGGAAGTAGTAGAAAGAATGAAACCAGTCGTGCACAACATACATTGTATCACATTACCCAGTTATCTCAAATTGCGTTACAAAACAAAACATTTTTTTTTTACTTTTGCTAAGTCGTTTTTTTTCCTCTCATGTCACACTCTTCACAAGATCACACTAGCAGGCAAAATTTCAGGCCCTCCCGGTTACCAGTTTGCATCACATTGTTGGAGATATCACAGTCACACAATGGCAATCGAAGAAAGAACTGACCATGCATCAGCTTGTCCACCATGGCTAGAAGATCCATCTCCTCCTTCCCCATCTTCGGCATCCGCGATCCTTTCCTGAAAATTGCGAAACTCGTACAAAAACCAAAACCTAAATCAACCCCTTTCGGGAAAAAAAAAAGCGAGATTCACGGAGGCGAAGAACCAACCCAAATTCGCAAACCAAATCCCGATTCCCAATTTGTGATCGCAGAAATTGGACAAAGCCCCCCAAGATCATTCATCAGTGTGGAAGGGGGGGGAAGAGAGGGGAGGTGGGCGCCCGAACCGAACCTGTCCTTGCGCGCGGAGGAGAGTGACATCCGGGCCATCCTGGACCGCAGCACGGCGTCCACCTCGAGGTCACCGTCGGCGGCGGGGTCGAAGGTGGGGTCGTCGTAGGAGCCCGCGTCGGGGTCGCAGATGCCGGCGAGGCTCGCGGCCTCGGGGTCGTCCTCCTCCGACCAGTCATATCCTTCCCCCTCCTCCTCCTCCTCGTCGTCGCTCTCCACCTCCTCCTCCGATCCCTCCTCCTCCTCCCCGTCGTCCTCCTCACGGGGCAGGGCGGCGCGGTGGTCGTCGTCGTCGGCGGCGGGGGCGGCCAT
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| CDS seq | ATGGCCGCCCCCGCCGCCGACGACGACGACCACCGCGCCGCCCTGCCCCGTGAGGAGGACGACGGGGAGGAGGAGGAGGGATCGGAGGAGGAGGTGGAGAGCGACGACGAGGAGGAGGAGGAGGGGGAAGGATATGACTGGTCGGAGGAGGACGACCCCGAGGCCGCGAGCCTCGCCGGCATCTGCGACCCCGACGCGGGCTCCTACGACGACCCCACCTTCGACCCCGCCGCCGACGGTGACCTCGAGGTGGACGCCGTGCTGCGGTCCAGGATGGCCCGGATGTCACTCTCCTCCGCGCGCAAGGACAGGAAAGGATCGCGGATGCCGAAGATGGGGAAGGAGGAGATGGATCTTCTAGCCATGGTGGACAAGCTGATGCATGATGGCCAGTTGGAGAAACTAAAGGTTTATGAATGCAAAGCATATTTGAGGATGCACAAGCTAAGATTGTCAGGCAACAAGGAAGTGCTCCTAACTCGCATCAGAGGACAAATTGAGGTGAAAACTATGGGAGAGGTGAAGTATCCAGTGTCAAGTTTTGTTTTGAACTGTCAAGGTGATTCATGCAAAGGTGATGTTGTGGTCTTTGAGCAAAATATTTACAAAAGGAAAAAAGGAGCTCCTCGTGGTGTCAAGGGTCATTTATGTGGTCAAAGGACAAATGCAGGTCGAATAATCAAAGAAAGCTATGGCACTAAGAAGCAACAGCACACGTTCACTATTGAGATTTTATGGAGTAGGGGGTACAAACCATGGCCTCCCCTCCATCCACTCCTCATAAAGGGTAGAAATCTCTACAAGGATAAGACCATGAGACAGCCATGGCTTGATGAAGAGGAAAGAAACAGAGCCCTCCAAGAAAAACATGCAAGAGGGTATGTGGCACGTAAGACAAGGGAAGTCAGGATTAAGGACAAAGAGAATGAACGGATGAGGAGATTAAATAGGTAA
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| Protein seq | MAAPAADDDDHRAALPREEDDGEEEEGSEEEVESDDEEEEEGEGYDWSEEDDPEAASLAGICDPDAGSYDDPTFDPAADGDLEVDAVLRSRMARMSLSSARKDRKGSRMPKMGKEEMDLLAMVDKLMHDGQLEKLKVYECKAYLRMHKLRLSGNKEVLLTRIRGQIEVKTMGEVKYPVSSFVLNCQGDSCKGDVVVFEQNIYKRKKGAPRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTIEILWSRGYKPWPPLHPLLIKGRNLYKDKTMRQPWLDEEERNRALQEKHARGYVARKTREVRIKDKENERMRRLNR |
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| Function | Zinc finger CCCH domain-containing protein 62 [UniProtKB/Swiss-Prot:Q338N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0391300 | OsNip_10t0391300-00 | Chr10 | 13018805 | 13023203 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCCGCCCCCGCCGCCGACGACGACGACCACCGCGCCGCCCTGCCCCGTGAGGAGGACGACGGGGAGGAGGAGGAGGGATCGGAGGAGGAGGTGGAGAGCGACGACGAGGAGGAGGAGGAGGGGGAAGGATATGACTGGTCGGAGGAGGACGACCCCGAGGCCGCGAGCCTCGCCGGCATCTGCGACCCCGACGCGGGCTCCTACGACGACCCCACCTTCGACCCCGCCGCCGACGGTGACCTCGAGGTGGACGCCGTGCTGCGGTCCAGGATGGCCCGGATGTCACTCTCCTCCGCGCGCAAGGACAGGAAAGGATCGCGGATGCCGAAGATGGGGAAGGAGGAGATGGATCTTCTAGCCATGGTGGACAAGCTGATGCATGATGGCCAGTTGGAGAAACTAAAGGTTTATGAATGCAAAGCATATTTGAGGATGCACAAGCTAAGATTGTCAGGCAACAAGGAAGTGCTCCTAACTCGCATCAGAGGACAAATTGAGGTGAAAACTATGGGAGAGGTGAAGTATCCAGTGTCAAGTTTTGTTTTGAACTGTCAAGGTGATTCATGCAAAGGTGATGTTGTGGTCTTTGAGCAAAATATTTACAAAAGGAAAAAAGGAGCTCCTCGTGGTGTCAAGGGTCATTTATGTGGTCAAAGGACAAATGCAGGTCGAATAATCAAAGAAAGCTATGGCACTAAGAAGCAACAGCACACGTTCACTATTGAGATTTTATGGAGTAGGGGGTACAAACCATGGCCTCCCCTCCATCCACTCCTCATAAAGGGTAGAAATCTCTACAAGGATAAGACCATGAGACAGCCATGGCTTGATGAAGAGGAAAGAAACAGAGCCCTCCAAGAAAAACATGCAAGAGGGTATGTGGCACGTAAGACAAGGGAAGTCAGGATTAAGGACAAAGAGAATGAACGGATGAGGAGATTAAATAGGTAA
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| Protein seq | MAAPAADDDDHRAALPREEDDGEEEEGSEEEVESDDEEEEEGEGYDWSEEDDPEAASLAGICDPDAGSYDDPTFDPAADGDLEVDAVLRSRMARMSLSSARKDRKGSRMPKMGKEEMDLLAMVDKLMHDGQLEKLKVYECKAYLRMHKLRLSGNKEVLLTRIRGQIEVKTMGEVKYPVSSFVLNCQGDSCKGDVVVFEQNIYKRKKGAPRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTIEILWSRGYKPWPPLHPLLIKGRNLYKDKTMRQPWLDEEERNRALQEKHARGYVARKTREVRIKDKENERMRRLNR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.268098 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g25220 | RBH | 0.000000 | 0.0 | 0.060890 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0391300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009370 | RBH | 0.0 | 5.528702 | 0.585491 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0009430 | RBH | 0.0 | 0.816696 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009270 | RBH | 0.0 | 3.160852 | 0.627879 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0009660 | RBH | 0.0 | 0.055938 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009410 | RBH | 0.000000 | 1.637316 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0225200 | RBH | 0.474197 | 0.5205835 | 0.4572785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0009410 | RBH | 0.0 | 0.227909 | 0.116875 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0243300 | RBH | 0.624645 | 0.053196 | 6.413777 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0009200 | RBH | 0.0 | 0.053990 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0009580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009190 | RBH | 0.0 | 0.0 | 0.109156 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009680 | RBH | 0.0 | 1.777410 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009500 | RBH | 0.0 | 1.861590 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009470 | RBH | 0.0 | 1.874374 | 0.370942 |
