Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_10g0009660 OGI:10043590 | 16/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr10:14291516-14295810
Gene Symbol C3H62, OsC3H62
DNA seq

CTACCTCAAATCATGCATAAATTTGCAGTTTTCCCCATACGGGCACCATCCCTGTTGTTGATAAATGAAGCATGGCTTCCATGGTCGAAACCTCTGGGGATTCTGGTTATGATTCTGCCTGTCATGGTACTGGTTTCCGTTCATTCCCTGGCGACCATGGTAATTCTGATGATGGTTCTGTTGGTGATGATACTGATCTTGAGACATTTGCCTGTGACCATAATAATTCTGATGATGGTTCTGTTGGTGATGATAACTCTGGTCCTCCCAATGGTAATCCTGGTTTCTTGACCTGAGAGGTTGATGCGTTTCGCGATCGACGCGAGCCTGGTGATGGCCAGAGCCATTGGAACCATGTTGGTATGTCTTTGCCTTCTGAGTGAAAGGCTGGAAGGCTGGTTTATCATGGTCTGTAGAGCCCCAATTGTTACTCTGACGATCCATGAAGCCTGTTCTTGAAGTACTTGTCCCGCCCTGCTGCCAAAACGCTTCATTCCTGTATTGATGATTAGGAGGTTGCTGCTGTGTGTAAGAGACTGCTTGCTGTGGAGTAGGAGTAGGAATAGGTCTTGAAGATATCTCCTGCCGCCTCATGTTCTCTGATCCTCCATGTTGTCTGGATGGAGGAGCCTGGTGATTGGTAAAATCTTGTCTGGCAGCTGATGTTTGGGATACTGCAGCCCTTTGCTCTTGCGAAGGAGGAACCCGCGGAAGCGCTTGATTGTGGTGTTGATGTTTGGGATACTGCTGTGGGTATGCAGAACTTTGCTGTATAGGAGCAGGCTTGATTGATTTTGGCGGCTGCTGCTGCTGCTGCTGCTGTGTTGTTTCCACTTTTACGGCATGTTGGAGGGAAGGAGCCTGATGGTTAATGAGCTGCGTTGTGCTAGTTCTTGATGTTCCCTTTTGGAGAAGCACTTCGTTGTGTTGTTGAGGATGAGGGAACTGCGGCAGGTAATGGAGCAATTGCTCTGTGGGAGTTTGCTTTGATGATAAATGTTGCTGACTTGAGTTCCCAGATTCACCATGTTGGAGTGAAGGAATTATCTTCTCAGCTCTAGTACATGAAAGACACGCATTAGAGAAATGACAGCATAATTTTAGATGTAAAATAACAGAGAATTCCCTGCATGCATTTTCTTTCCTATGTAAATCTCATATTTAGATGGCAATGCACAACAGTAATCCTGACAAAAAATATACTACAATGAAGCAAAATCACACTTTTTCTAACATGAGAAAGTGATAGCATTCAGAAGTACCTTTTCTGAACAGTATTCATAGTCACCGTATGTTGCGGAAAAACCGCTTGAGATGATTTTTTATTCATGTTGTCCTGTCCTTTGCTCTTGTTTTCCTTGTTCCTATTAATCATAACAACATTTTGAGAAGTCAAAAGTTTTCTTTTACCATGATATGAACTCTGATCACAAATTTAAGATGTAGTAGATAATTAAATAATGCTACTGACGAGAGGAAAAAATCATAGCATGTGCTACCATTCTAATTTAGTTAAGTTTCAGAGAAAGTGCTGTAGAAAATTAGGACACATGGCTGGGATCTCCAAAAAAAAGCAGTTAGATTTCTTGATCAGTCATATGTTTGATATATCCTAGCACCATGACCAACACATTGTAACTAGAAATCTAGAATCAGCTCAAACTTTCTAATTAGTCTACTGTCTACTTGCATCTTCCCAATCAGAATCTATTTCCAATGTTTAAACAATGGACTGGATGTAAACTTCATAAGCAGGATGAGATGATCTCAAAGTAGCAAATTTTCATGCTGGTTCTGAACAGAATATTTTCTCTCTTTTGGCCCTTAAATGATATGACCTGTTACCATAGTTTTTTGAACAGAGGAATTCATTGAGATGCATACACACCATGACAAAGGTTTATATTATAATCATCACTAACGCATGTCACAGTTAATAGGCTTACCTATTTAATCTCCTCATCCGTTCATTCTCTTTGTCCTTAATCCTGACTTCCCTTGTCTTACGTGCCACATACCCTCTTGCATGTTTTTCTTGGAGGGCTCTGTTTCTTTCCTCTTCATCAAGCCATGGCTGTGAGTGTAACAGAAATTAGCTTCAATAATTAAGTCCTGCTTTCCCTAAGACAAAATGAACCTTTAAGAACACACCTGTCTCATGGTCTTATCCTTGTAGAGATTTCTACCCTTTATGAGGAGTGGATGGAGGGGAGGCCATGGCTTGTACCCCCTACTCCATAAAATCTCAATCTGCATTTGCATATTTCTCTGTTGGTTTTAAGCGGTCTATGATGATTATTGTAGCTTAAGGCAAAAACTTATGCTGGTAAAAAGAAGTAAGAATTTACAGTGAACGTGTGCTGTTGCTTCTTAGTGCCATAGCTTTCTTTGATTATTCGACCTGCATTTGTCCTTTGACCACATAAATGACCCTTGACACCACGAGGAGCTCCTTTTTTCCTGCAGTGATAATCAACAGCCAAAGTAAAAAGGACATTATATATAAATATTGTGATTGGAGAATCATGCCCATCACTTCAGTAAATTAACACTCTGCCTAATATCCATTACCTTTTGTAAATATTTTGCTCAAAGACCACAACATCACCTTTGCATGAATCACCTATGATATTTAAGGGGTGCATAAGAAGGCAAAAAGTTAGAGCTTAAACAGTCCAAACTGTAGAAAGAAAAAAAAGGTATTGCAAATGAAAATGCCATTAAATTATGTATTCGAGAACTATAACTCTACCAGAAGACCAGAACTATACTTCAACGTGGGCGGTGTTATTTCAGACAACCTTAAGTGCATGAACTACGGACTATCCATTAACTGAAACAAGTTTAGAAAGCTTTCTAATTTTCTTGTCATTCATATCACTGTGCAACTATAGCATGAATGTTAGACTGATCACCTTGACAGTTCAAAACAAAACTTGACACTGGATACTTCACCTCTCCCATAGTTTTGACCCTGGTTTTGAAGCACAAGAAAGTGGTCAAACAAAAGCAGTTCATTTGCATTACAAAATATCAACAAAGTTGACAAGTAACATATAAAGAAGAAGGACAGATTACATAAAGGATATAGTTCATACTCAATTTGTTCTCTGATGCGAGTTAGGAGCACTTCCTTGTTGCCTGACAATCTTAGCTTGTGCATCCTCAAATATGCTTTGCATTCATAAACCTTTAGTTTCTCCAACTGGCCATCTGTGAATTGCAATAGCACATCACTCATATGATCAACAATAAGAATATGTGATGACCAGTAACAACATGGAAATTTACTATTTCGATAATGTACCCCATGAAACTGTAGCAATGCTAAGATACAGTTTCTGCAAACAATTTGTCTGCTTCGGCTTAAAATTACATTAAGAAATGAAGGTTTACCTGAAAGAGCTAAAACATGACGATTCTAAAATTGTACTACTGATCAAATTTCTTTGGAAGTAGTAGAAAGAATGAAACCAGTCGTGCACAACATACATTGTATCACATTACCCAGTTATCTCAAATTCAAAACAAAACATTTTTTTTTTACTTTTGCTAAGTCGTTTTTTTTCCTCTCATGTCACACTCTTCACAAGATCACACTAGCAGGCAAAATTTCAGGTCCTCCCGGTTACCAGTTTGCATCACATTGTTGGAGATATCACAGTCACACAATGGCAATCGAAGAAAGAACTGACCATGCATCAGCTTGTCCACCATGGCTAGAAGATCCATCTCCTCCTTCCCCATCTTCGGCATCCGCGATCCTTTCCTGAAAATTGCGAAACTCGTACAAAAACCAAAACCTAAATCAACCCCTTTCGGGAAAAAAAAAAGCGAGATTCACGGAGGCGAAGAACCAACCCAAATTCGCAAACCAAATCCCGATTCCCAATTTGTGATCGCAGAAATTGGACAAAGCCCCCCAAGATCATTCATCAGTGTGGAAGGGGGGGAAGAGAGGGGAGGTGGGCGCCCGAACCGAACCTGTCCTTGCGCGCGGAGGAGAGTGACATCCGGGCCATCCTGGACCGCAGCACGGCGTCCACCTCGAGGTCACCGTCGGCGGCGGGGTCGAAGGTGGGGTCGTCGTCGGAGCCCGCGTCGGGGTCGCAGATGCCGGCGAGGCTCGCGGCCTCGGGGTCGTCCTCCTCCGACCAGTCATATCCTTCCCCCTCCTCCTCCTCCTCGTCGTCGCTCTCCACCTCCTCCTCCGATCCCTCCTCCTCCTCCCCGTCGTCCTCCTCACGGGGCAGGGCGGCGCGGTGGTCGTCGTCGTCGGCGGCGGGGGCGGCCAT

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CDS seq

ATGGCCGCCCCCGCCGCCGACGACGACGACCACCGCGCCGCCCTGCCCCGTGAGGAGGACGACGGGGAGGAGGAGGAGGGATCGGAGGAGGAGGTGGAGAGCGACGACGAGGAGGAGGAGGAGGGGGAAGGATATGACTGGTCGGAGGAGGACGACCCCGAGGCCGCGAGCCTCGCCGGCATCTGCGACCCCGACGCGGGCTCCGACGACGACCCCACCTTCGACCCCGCCGCCGACGGTGACCTCGAGGTGGACGCCGTGCTGCGGTCCAGGATGGCCCGGATGTCACTCTCCTCCGCGCGCAAGGACAGGAAAGGATCGCGGATGCCGAAGATGGGGAAGGAGGAGATGGATCTTCTAGCCATGGTGGACAAGCTGATGCATGATGGCCAGTTGGAGAAACTAAAGGTTTATGAATGCAAAGCATATTTGAGGATGCACAAGCTAAGATTGTCAGGCAACAAGGAAGTGCTCCTAACTCGCATCAGAGAACAAATTGAGGTCAAAACTATGGGAGAGGTGAAGTATCCAGTGTCAAGTTTTGTTTTGAACTGTCAAGGTGATTCATGCAAAGGTGATGTTGTGGTCTTTGAGCAAAATATTTACAAAAGGAAAAAAGGAGCTCCTCGTGGTGTCAAGGGTCATTTATGTGGTCAAAGGACAAATGCAGGTCGAATAATCAAAGAAAGCTATGGCACTAAGAAGCAACAGCACACGTTCACTATTGAGATTTTATGGAGTAGGGGGTACAAGCCATGGCCTCCCCTCCATCCACTCCTCATAAAGGGTAGAAATCTCTACAAGGATAAGACCATGAGACAGCCATGGCTTGATGAAGAGGAAAGAAACAGAGCCCTCCAAGAAAAACATGCAAGAGGGTATGTGGCACGTAAGACAAGGGAAGTCAGGATTAAGGACAAAGAGAATGAACGGATGAGGAGATTAAATAGGAACAAGGAAAACAAGAGCAAAGGACAGGACAACATGAATAAAAAATCATCTCAAGCGGTTTTTCCGCAACATACGGTGACTATGAATACTGTTCAGAAAAGAGCTGAGAAGATAATTCCTTCACTCCAACATGGTGAATCTGGGAACTCAAGTCAGCAACATTTATCATCAAAGCAAACTCCCACAGAGCAATTGCTCCATTACCTGCCGCAGTTCCCTCATCCTCAACAACACAACGAAGTGCTTCTCCAAAAGGGAACATCAAGAACTAGCACAACGCAGCTCATTAACCATCAGGCTCCTTCCCTCCAACATGCCGTAAAAGTGGAAACAACACAGCAGCAGCAGCAGCAGCAGCCGCCAAAATCAATCAAGCCTGCTCCTATACAGCAAAGTTCTGCATACCCACAGCAGTATCCCAAACATCAACACCACAATCAAGCGCTTCCGCGGGTTCCTCCTTCGCAAGAGCAAAGGGCTGCAGTATCCCAAACATCAGCTGCCAGACAAGATTTTACCAATCACCAGGCTCCTCCATCCAGACAACATGGAGGATCAGAGAACATGAGGCGGCAGGAGATATCTTCAAGACCTATTCCTACTCCTACTCCACAGCAAGCAGTCTCTTACACACAGCAGCAACCTCCTAATCATCAATACAGGAATGAAGCGTTTTGGCAGCAGGGCGGGACAAGTACTTCAAGAACAGGCTTCATGGATCGTCAGAGTAACAATTGGGGCTCTACAGACCATGATAAACCAGCCTTCCAGCCTTTCACTCAGAAGGCAAAGACATACCAACATGGTTCCAATGGCTCTGGCCATCACCAGGCTCGCGTCGATCGCGAAACGCATCAACCTCTCAGGTCAAGAAACCAGGATTACCATTGGGAGGACCAGAGTTATCATCACCAACAGAACCATCATCAGAATTATTATGGTCACAGGCAAATGTCTCAAGATCAGTATCATCACCAACAGAACCATCATCAGAATTACCATGGTCGCCAGGGAATGAACGGAAACCAGTACCATGACAGGCAGAATCATAACCAGAATCCCCAGAGGTTTCGACCATGGAAGCCATGCTTCATTTATCAACAACAGGGATGGTGCCCGTATGGGGAAAACTGCAAATTTATGCATGATTTGAGGTAG

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Protein seq

MAAPAADDDDHRAALPREEDDGEEEEGSEEEVESDDEEEEEGEGYDWSEEDDPEAASLAGICDPDAGSDDDPTFDPAADGDLEVDAVLRSRMARMSLSSARKDRKGSRMPKMGKEEMDLLAMVDKLMHDGQLEKLKVYECKAYLRMHKLRLSGNKEVLLTRIREQIEVKTMGEVKYPVSSFVLNCQGDSCKGDVVVFEQNIYKRKKGAPRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTIEILWSRGYKPWPPLHPLLIKGRNLYKDKTMRQPWLDEEERNRALQEKHARGYVARKTREVRIKDKENERMRRLNRNKENKSKGQDNMNKKSSQAVFPQHTVTMNTVQKRAEKIIPSLQHGESGNSSQQHLSSKQTPTEQLLHYLPQFPHPQQHNEVLLQKGTSRTSTTQLINHQAPSLQHAVKVETTQQQQQQQPPKSIKPAPIQQSSAYPQQYPKHQHHNQALPRVPPSQEQRAAVSQTSAARQDFTNHQAPPSRQHGGSENMRRQEISSRPIPTPTPQQAVSYTQQQPPNHQYRNEAFWQQGGTSTSRTGFMDRQSNNWGSTDHDKPAFQPFTQKAKTYQHGSNGSGHHQARVDRETHQPLRSRNQDYHWEDQSYHHQQNHHQNYYGHRQMSQDQYHHQQNHHQNYHGRQGMNGNQYHDRQNHNQNPQRFRPWKPCFIYQQQGWCPYGENCKFMHDLR

Function Zinc finger CCCH domain-containing protein 62 [UniProtKB/Swiss-Prot:Q338N2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_10g0009660 OsARC_10g0009660.01 Chr10 14291516 14295810 - NAM
CDS seq

ATGGCCGCCCCCGCCGCCGACGACGACGACCACCGCGCCGCCCTGCCCCGTGAGGAGGACGACGGGGAGGAGGAGGAGGGATCGGAGGAGGAGGTGGAGAGCGACGACGAGGAGGAGGAGGAGGGGGAAGGATATGACTGGTCGGAGGAGGACGACCCCGAGGCCGCGAGCCTCGCCGGCATCTGCGACCCCGACGCGGGCTCCGACGACGACCCCACCTTCGACCCCGCCGCCGACGGTGACCTCGAGGTGGACGCCGTGCTGCGGTCCAGGATGGCCCGGATGTCACTCTCCTCCGCGCGCAAGGACAGGAAAGGATCGCGGATGCCGAAGATGGGGAAGGAGGAGATGGATCTTCTAGCCATGGTGGACAAGCTGATGCATGATGGCCAGTTGGAGAAACTAAAGGTTTATGAATGCAAAGCATATTTGAGGATGCACAAGCTAAGATTGTCAGGCAACAAGGAAGTGCTCCTAACTCGCATCAGAGAACAAATTGAGGTCAAAACTATGGGAGAGGTGAAGTATCCAGTGTCAAGTTTTGTTTTGAACTGTCAAGGTGATTCATGCAAAGGTGATGTTGTGGTCTTTGAGCAAAATATTTACAAAAGGAAAAAAGGAGCTCCTCGTGGTGTCAAGGGTCATTTATGTGGTCAAAGGACAAATGCAGGTCGAATAATCAAAGAAAGCTATGGCACTAAGAAGCAACAGCACACGTTCACTATTGAGATTTTATGGAGTAGGGGGTACAAGCCATGGCCTCCCCTCCATCCACTCCTCATAAAGGGTAGAAATCTCTACAAGGATAAGACCATGAGACAGCCATGGCTTGATGAAGAGGAAAGAAACAGAGCCCTCCAAGAAAAACATGCAAGAGGGTATGTGGCACGTAAGACAAGGGAAGTCAGGATTAAGGACAAAGAGAATGAACGGATGAGGAGATTAAATAGGAACAAGGAAAACAAGAGCAAAGGACAGGACAACATGAATAAAAAATCATCTCAAGCGGTTTTTCCGCAACATACGGTGACTATGAATACTGTTCAGAAAAGAGCTGAGAAGATAATTCCTTCACTCCAACATGGTGAATCTGGGAACTCAAGTCAGCAACATTTATCATCAAAGCAAACTCCCACAGAGCAATTGCTCCATTACCTGCCGCAGTTCCCTCATCCTCAACAACACAACGAAGTGCTTCTCCAAAAGGGAACATCAAGAACTAGCACAACGCAGCTCATTAACCATCAGGCTCCTTCCCTCCAACATGCCGTAAAAGTGGAAACAACACAGCAGCAGCAGCAGCAGCAGCCGCCAAAATCAATCAAGCCTGCTCCTATACAGCAAAGTTCTGCATACCCACAGCAGTATCCCAAACATCAACACCACAATCAAGCGCTTCCGCGGGTTCCTCCTTCGCAAGAGCAAAGGGCTGCAGTATCCCAAACATCAGCTGCCAGACAAGATTTTACCAATCACCAGGCTCCTCCATCCAGACAACATGGAGGATCAGAGAACATGAGGCGGCAGGAGATATCTTCAAGACCTATTCCTACTCCTACTCCACAGCAAGCAGTCTCTTACACACAGCAGCAACCTCCTAATCATCAATACAGGAATGAAGCGTTTTGGCAGCAGGGCGGGACAAGTACTTCAAGAACAGGCTTCATGGATCGTCAGAGTAACAATTGGGGCTCTACAGACCATGATAAACCAGCCTTCCAGCCTTTCACTCAGAAGGCAAAGACATACCAACATGGTTCCAATGGCTCTGGCCATCACCAGGCTCGCGTCGATCGCGAAACGCATCAACCTCTCAGGTCAAGAAACCAGGATTACCATTGGGAGGACCAGAGTTATCATCACCAACAGAACCATCATCAGAATTATTATGGTCACAGGCAAATGTCTCAAGATCAGTATCATCACCAACAGAACCATCATCAGAATTACCATGGTCGCCAGGGAATGAACGGAAACCAGTACCATGACAGGCAGAATCATAACCAGAATCCCCAGAGGTTTCGACCATGGAAGCCATGCTTCATTTATCAACAACAGGGATGGTGCCCGTATGGGGAAAACTGCAAATTTATGCATGATTTGAGGTAG

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Protein seq

MAAPAADDDDHRAALPREEDDGEEEEGSEEEVESDDEEEEEGEGYDWSEEDDPEAASLAGICDPDAGSDDDPTFDPAADGDLEVDAVLRSRMARMSLSSARKDRKGSRMPKMGKEEMDLLAMVDKLMHDGQLEKLKVYECKAYLRMHKLRLSGNKEVLLTRIREQIEVKTMGEVKYPVSSFVLNCQGDSCKGDVVVFEQNIYKRKKGAPRGVKGHLCGQRTNAGRIIKESYGTKKQQHTFTIEILWSRGYKPWPPLHPLLIKGRNLYKDKTMRQPWLDEEERNRALQEKHARGYVARKTREVRIKDKENERMRRLNRNKENKSKGQDNMNKKSSQAVFPQHTVTMNTVQKRAEKIIPSLQHGESGNSSQQHLSSKQTPTEQLLHYLPQFPHPQQHNEVLLQKGTSRTSTTQLINHQAPSLQHAVKVETTQQQQQQQPPKSIKPAPIQQSSAYPQQYPKHQHHNQALPRVPPSQEQRAAVSQTSAARQDFTNHQAPPSRQHGGSENMRRQEISSRPIPTPTPQQAVSYTQQQPPNHQYRNEAFWQQGGTSTSRTGFMDRQSNNWGSTDHDKPAFQPFTQKAKTYQHGSNGSGHHQARVDRETHQPLRSRNQDYHWEDQSYHHQQNHHQNYYGHRQMSQDQYHHQQNHHQNYHGRQGMNGNQYHDRQNHNQNPQRFRPWKPCFIYQQQGWCPYGENCKFMHDLR

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.055938 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_10g0391300 RBH 0.000000 0.0 0.268098
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g25220 RBH 0.000000 0.0 0.060890
Nipponbare | IRGSP 1.0 | RAP-db Os10g0391300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_10g0009370 RBH 0.0 5.528702 0.585491
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_10g0009430 RBH 0.0 0.816696 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_10g0009270 RBH 0.0 3.160852 0.627879
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0023410 RBH 0.105327 0.290359 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0009410 RBH 0.000000 1.637316 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_10G0225200 RBH 0.474197 0.5205835 0.4572785
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_10g0009410 RBH 0.0 0.227909 0.116875
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0243300 RBH 0.624645 0.053196 6.413777
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_10g0009200 RBH 0.0 0.053990 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_10g0009160 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0009580 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0009190 RBH 0.0 0.0 0.109156
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_10g0009680 RBH 0.0 1.777410 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G009500 RBH 0.0 1.861590 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_10g0009470 RBH 0.0 1.874374 0.370942
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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