Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNip_10g0368902 | OGI:10038980 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:11572574-11576610 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATAAATTAGGCTATGGATATGCACATTTATTTGAAAGCTCGCAACCACATGTGTATGCTGTCATGAGGTTATCACAATCTTTGGCCCTGATGAATTGGTAGCGTGCAACCAATACAATACAATACAATTCTCTGCTAAGACTAATTCTGATGAGAGGCATTTTCATCTTCTAGTGTTCCCACATTTCCCTAGATCGTCAAGGTGAGTTTCCATTAAATTTCTGAAAAATTGCAGCCGTGGAGCAACCAAGCAGGAACAGGCCCAACGCAATACCCAAAGACATTCTAGTTCCCATGACACCATTCCATGCTATTTTAGCAAGAAAAAAAATACAATCTAAAATGGCAACAGATAGAACAGAAACCCAGAAAATAACTGCAAGAAAGCAAGTTACCTGTTCGCCCCCCTGTCCTGGCCGGCGGCGAGCAGCACGCCAGCACCGCCCAGTCTTTCTTTCACATCGATCCTTCCCAGCAGGACATGATGGCTTCACACAGCCGAGTGAGTGTTGGAAATCATCTCCTGCCGTGCATACGCACATACCATGTATAGATAAATATAGTTAGAACTCAAAACGCTGATCATAATAATAGACAGTTCAAAAACACTAGTTACTAGTTGCTACAGCAACAAATTGTATTCAGTAATGATGCATAATATTTCAACCATCACTACTTTTGCTGCAAATACATCATCTTCGTTTTTTGTCACTGGTAGCATCTCCACTCATAACTAATCAACAAAAGATAGTAGCAAATGTGCCACTGGTAGCATCTCCACCCATAACTAATCAACGAACGTTAGTCAAGCAATAGCCTAGAACCACATGTAATCCTAAAAGAAGAAGAAACAGCAGATAGCAGAGAAGAGCAACCATGTTATGAGTATCCGGTAATGATCAGATGGGACAGGAATGCGAGGTAGTAGGGCGTGGCTTTGGCGGCTTAGACAATGAACAGCCCATGGTGATCACGGCAAAAGCACAGCAGCAGGAGATGAGAAAACTGAGAACAAGGGGATGAAGAACTGAGATTGATCTTGCTTGCTCTATTCATCTAAAATGGTGCCATTTATATGGCTTACATGGCTAAACCGAATGCTAAACAAAAGGAAACCAGATGCTATTTCAAAGGGATAAGAAATGCAATCTAAACGAAGCAAAGCACTGTGATCCAAGCACCCGATTACGCCTTCACTCGCTGTGCGTCCTTTCTGGCATCTGTTCCTGCACATCTGCTGGCAGCCCAACAGCTCCCGATGAGGCTGGCGCGCGCTTGCGCCTGCGGTACACAACACCCACTTACCCAGAACTGAAGCATAGAATGGATGTTGAACCCACGGCAGGACCAGGATCAATGGATAAGGAAACACCTCCAACCTTAGGAGCAGAATCAATGAAACTGGTAGACTGTTCTAATAAAATGTTAGCTTTGCATTCATTGGCCCTACCGCAATACAGATAGGAATCTGAGATGAGCTGAAAGATACATGAAAAGTAAGCATCTGCCATCTTAGGAACAAATTGATCTGGACCTATTTTCTCTTTCTTCTTTACAAAAATCAAAGGTATGGATGGTGGGCCAAGATCTCAACAGTCAGCACTATTGTTCTAATTTTACACGAGTTGAAATTTAAGGGTTATTACCTTTTGTATGTAAGTACAACTTGAAATTCTTGTCAGGAAGAATCTGCATTATTCTACGATCACCCACTGGACATACAGCTGCCATCTGTAGAACAATGTCAACAAAAGGGTTAACAGATGGAAAGTACACACTTTCAACAAGAGGGGAAATACATACCAGGTCACCGAGCATGATGAAATCAGCGATGAACACCATGATATGACCATTTCATTTTGATTGAACAACGGATGCTACGGTAACTTCAAAAGCCGCAACAACCATCAAATATAACATAGAGAAGCACATGTTTCTAATACACTTCAACCTGGTCAGCCAAAATGGTAAGTGGCTTCCTGACAAAGTTTTGTACCATAATTCCCCATGTGCGCTCATTAGGTACTATTCCACCACTTACTGCCCTGTTTAGAAGCATAGCAGCATCATCAAGCAATCTGACTTTGCAGTGCCAACTAATGAGAATATTGTATGTAATAATATCAGGATGCACATTTTCATTGTGTAGCTTCTCTAGGAGATTGAGAGCGGCGTGCATCCATCCCATTTTGCATAATCCATTTATGAGTGTATTGTAAGTGACAATGTCAGGAGCAAGCCCTTGATTCAACATCTGCTTTGAGAGCTCTAGAGCATCACGTACCCTTCTCTCCTTACAAAGCTCACTGATCAGAATGTTGTATGAAACATTATTTGGCTTAATACCCTTTTCTGCCATTTCTTCAAGAAGCACAAGGCTCCGATCAACATTCCCATCTTTGCACATGGCTTTTATCAGCCCGTTGTAGCTAACAACATCAAGTGAGCAACCATGAAGTATCATTTCCTTCGCAAGTCTCACAGCATCCTGCCACCTTCCATCACGCAGCAGTGCATGAATGATTGTATTGTAAGTTATACCATTTGCAACAACACCCTCCTCAAGTAAGTTTTCAAACATATGTTCTGCTTCCTCCATCTGTTCATTGTTGCACAAGTGATAAATTATTGTATTATATGAGCAAATATCAGGGTTACACCCTTGACTTCTCATCTCTTGAATGAGCCCCATCGCCTCGTCCATCCTGCCATCCTTGCATAGTGCATATATCATTCCATTGTACCCTTGTGAATTCAAAGTCAAGCCCTTTGCTGACATCTCCTCCAGCAATGCTCTTGTGTCATCCCACATGCCATTCTTGCAAAAGGAATGTAGCACGATCGTGTAGGTGACTACGTTCGGAGCAAATCCCTTCTTCTCCATTTCTCTAAGCAATCGCACAGCGGAACCGATCCTTCCAAGCTTGCAAAGACCATGCATCAATATACTGTAGGTGTGCGCGTCTGGTTGGCAGCCCTTCAAACCCATTGTCTCATACAGCTCTGTAGCCTCTGCTAGCTTCCCCTCTGCGAGACAGCCGCCAATCACCGTGTTAAACAACACGACATTCAGCTCCGGCACCCTCCCGAGCATTGCCCGTGCCTCATCAGCCTGCCTCACCCTGCACAGTCCCTGCAGGAGGAAACCATACGTCATCACGCCGGGCATGCAGCCTTTCGTCATCATCCTGTCAACCAGCCTCGCCGCCTCGCGTACCCGCCCGAGGCCGCACATCCCACGCACGACATCGTCGAACGTGTTCACGTCCGCGGCGCAACCCATGAGGAGCATCTCGTTGAGCAGCGTGGCGGCCTCGGTGACCCCTCCCTGATCGCACAGCGCGTGGATCACCGTCTGGTAGAGCACGGCGTCGGGGACGCACCCGTGCCGCGCCATCCCGCGGAGCAGCGCGAGCGCCTCGTCGGCGCGGCCGAGGCGGCAGAGCGCCCGCGCGGCGACGCCGAACGTGAAGGTGGTGGGCGGGACGCGGTCCCTGTGGACCATCCGGCGGTAGAGCGCGAGCGCGTCGGCGTGGCAGTCCGCCCTGGCGAGCACTGACAGGACGACGTTGTAGGAGCGGAACGACGGCTGAACACCGAAGCGGCGGGGCAATTGGTCGAGCAGGTGGAGGGCGCGACCGGGAGGCAAAGATCGGAGCAGCGGGAGGAGGAGGGACTCGCGGAGTGGGAGGAAGCCGGGCGGGAGGGAGTCGAGGAGGGAGAGGGCGCGGTCGGGGTCGCCGCCGGCGAGGAGAGGGCGGAGCGGGAGGGAGGAGAGTGCCGGGTGGGAGGAGGCGTACCAGGTGAGGAGGAGGAGGGAGGTGGCCGGGGAGAGCGGGAGCGCGAGGAGGCGGCCGAGGCGGCGCGGGGTGAGCGGGCGGGAGGCGAGCGTGGCGCGGAGGCGGGAGAGGTCGAACGGCGTGAGGAGCTCCGGCCACGACGTCGCCGCGGCGCCGGCGGCGGACGGCGGGAGGCGAGGCGGGTGGTGCTCCGCCATTTGTATCACTCTTTTGGGGTAGTGCAAGTTCAGTTGTGGCG
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CDS seq | ATGGTCCACAGGGACCGCGTCCCGCCCACCACCTTCACGTTCGGCGTCGCCGCGCGGGCGCTCTGCCGCCTCGGCCGCGCCGACGAGGCGCTCGCGCTGCTCCGCGGGATGGCGCGGCACGGGTGCGTCCCCGACGCCGTGCTCTACCAGACGGTGATCCACGCGCTGTGCGATCAGGGAGGGGTCACCGAGGCCGCCACGCTGCTCAACGAGATGCTCCTCATGGGTTGCGCCGCGGACGTGAACACGTTCGACGATGTCGTGCGTGGGATGTGCGGCCTCGGGCGGGTACGCGAGGCGGCGAGGCTGGTTGACAGGATGATGACGAAAGGCTGCATGCCCGGCGTGATGACGTATGGTTTCCTCCTGCAGGGACTGTGCAGGGTGAGGCAGGCTGATGAGGCACGGGCAATGCTCGGGAGGGTGCCGGAGCTGAATGTCGTGTTGTTTAACACGGTGATTGGCGGCTGTCTCGCAGAGGGGAAGCTAGCAGAGGCTACAGAGCTGTATGAGACAATGGGTTTGAAGGGCTGCCAACCAGACGCGCACACCTACAGTATATTGATGCATGGTCTTTGCAAGCTTGGAAGGATCGGTTCCGCTGTGCGATTGCTTAGAGAAATGGAGAAGAAGGGATTTGCTCCGAACGTAGTCACCTACACGATCGTGCTACATTCCTTTTGCAAGAATGGCATGTGGGATGACACAAGAGCATTGCTGGAGGAGATGTCAGCAAAGGGCTTGACTTTGAATTCACAAGGGTACAATGGAATGATATATGCACTATGCAAGGATGGCAGGATGGACGAGGCGATGGGGCTCATTCAAGAGATGAGAAGTCAAGGGTGTAACCCTGATATTTGCTCATATAATACAATAATTTATCACTTGTGCAACAATGAACAGATGGAGGAAGCAGAACATATGTTTGAAAACTTACTTGAGGAGGGTGTTGTTGCAAATGGTATAACTTACAATACAATCATTCATGCACTGCTGCGTGATGGAAGGTGGCAGGATGCTGTGAGACTTGCGAAGGAAATGATACTTCATGGTTGCTCACTTGATGTTGTTAGCTACAACGGGCTGATAAAAGCCATGTGCAAAGATGGGAATGTTGATCGGAGCCTTGTGCTTCTTGAAGAAATGGCAGAAAAGGGTATTAAGCCAAATAATGTTTCATACAACATTCTGATCAGTGAGCTTTGTAAGGAGAGAAGGGTACGTGATGCTCTAGAGCTCTCAAAGCAGATGTTGAATCAAGGGCTTGCTCCTGACATTGTCACTTACAATACACTCATAAATGGATTATGCAAAATGGGATGGATGCACGCCGCTCTCAATCTCCTAGAGAAGCTACACAATGAAAATGTGCATCCTGATATTATTACATACAATATTCTCATTAGTTGGCACTGCAAAGTCAGATTGCTTGATGATGCTGCTATGCTTCTAAACAGGGCAGTAAGTGGTGGAATAGTACCTAATGAGCGCACATGGGGAATTATGGTACAAAACTTTGTCAGGAAGCCACTTACCATTTTGGCTGACCAGGTTGAAGTGCGCAAGCGCGCGCCAGCCTCATCGGGAGCTGTTGGGCTGCCAGCAGATGTGCAGGAACAGATGCCAGAAAGGACGCACAGCGAGTGA
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Protein seq | MVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAVSGGIVPNERTWGIMVQNFVRKPLTILADQVEVRKRAPASSGAVGLPADVQEQMPERTHSE |
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Function | Pentatricopeptide repeat-containing protein At5g64320, mitochondrial [UniProtKB/Swiss-Prot:Q9FMF6] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_10g0368902 | OsNip_10t0368902-00 | Chr10 | 11573766 | 11576077 | - | RAP2018-11-26 | ||
CDS seq | ATGGTCCACAGGGACCGCGTCCCGCCCACCACCTTCACGTTCGGCGTCGCCGCGCGGGCGCTCTGCCGCCTCGGCCGCGCCGACGAGGCGCTCGCGCTGCTCCGCGGGATGGCGCGGCACGGGTGCGTCCCCGACGCCGTGCTCTACCAGACGGTGATCCACGCGCTGTGCGATCAGGGAGGGGTCACCGAGGCCGCCACGCTGCTCAACGAGATGCTCCTCATGGGTTGCGCCGCGGACGTGAACACGTTCGACGATGTCGTGCGTGGGATGTGCGGCCTCGGGCGGGTACGCGAGGCGGCGAGGCTGGTTGACAGGATGATGACGAAAGGCTGCATGCCCGGCGTGATGACGTATGGTTTCCTCCTGCAGGGACTGTGCAGGGTGAGGCAGGCTGATGAGGCACGGGCAATGCTCGGGAGGGTGCCGGAGCTGAATGTCGTGTTGTTTAACACGGTGATTGGCGGCTGTCTCGCAGAGGGGAAGCTAGCAGAGGCTACAGAGCTGTATGAGACAATGGGTTTGAAGGGCTGCCAACCAGACGCGCACACCTACAGTATATTGATGCATGGTCTTTGCAAGCTTGGAAGGATCGGTTCCGCTGTGCGATTGCTTAGAGAAATGGAGAAGAAGGGATTTGCTCCGAACGTAGTCACCTACACGATCGTGCTACATTCCTTTTGCAAGAATGGCATGTGGGATGACACAAGAGCATTGCTGGAGGAGATGTCAGCAAAGGGCTTGACTTTGAATTCACAAGGGTACAATGGAATGATATATGCACTATGCAAGGATGGCAGGATGGACGAGGCGATGGGGCTCATTCAAGAGATGAGAAGTCAAGGGTGTAACCCTGATATTTGCTCATATAATACAATAATTTATCACTTGTGCAACAATGAACAGATGGAGGAAGCAGAACATATGTTTGAAAACTTACTTGAGGAGGGTGTTGTTGCAAATGGTATAACTTACAATACAATCATTCATGCACTGCTGCGTGATGGAAGGTGGCAGGATGCTGTGAGACTTGCGAAGGAAATGATACTTCATGGTTGCTCACTTGATGTTGTTAGCTACAACGGGCTGATAAAAGCCATGTGCAAAGATGGGAATGTTGATCGGAGCCTTGTGCTTCTTGAAGAAATGGCAGAAAAGGGTATTAAGCCAAATAATGTTTCATACAACATTCTGATCAGTGAGCTTTGTAAGGAGAGAAGGGTACGTGATGCTCTAGAGCTCTCAAAGCAGATGTTGAATCAAGGGCTTGCTCCTGACATTGTCACTTACAATACACTCATAAATGGATTATGCAAAATGGGATGGATGCACGCCGCTCTCAATCTCCTAGAGAAGCTACACAATGAAAATGTGCATCCTGATATTATTACATACAATATTCTCATTAGTTGGCACTGCAAAGTCAGATTGCTTGATGATGCTGCTATGCTTCTAAACAGGGCAGTAAGTGGTGGAATAGTACCTAATGAGCGCACATGGGGAATTATGGTACAAAACTTTGTCAGGAAGCCACTTACCATTTTGGCTGACCAGGTTGAAGTGCGCAAGCGCGCGCCAGCCTCATCGGGAGCTGTTGGGCTGCCAGCAGATGTGCAGGAACAGATGCCAGAAAGGACGCACAGCGAGTGA
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Protein seq | MVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAVSGGIVPNERTWGIMVQNFVRKPLTILADQVEVRKRAPASSGAVGLPADVQEQMPERTHSE
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_10g0368902 | OsNip_10t0368902-01 | Chr10 | 11572574 | 11576610 | - | IsoSeq | ||
CDS seq | GCCACAACTGAACTTGCACTACCCCAAAAGAGTGATACAAATGGCGGAGCACCACCCGCCTCGCCTCCCGCCGTCCGCCGCCGGCGCCGCGGCGACGTCGTGGCCGGAGCTCCTCACGCCGTTCGACCTCTCCCGCCTCCGCGCCACGCTCGCCTCCCGCCCGCTCACCCCGCGCCGCCTCGGCCGCCTCCTCGCGCTCCCGCTCTCCCCGGCCACCTCCCTCCTCCTCCTCACCTGGTACGCCTCCTCCCACCCGGCACTCTCCTCCCTCCCGCTCCGCCCTCTCCTCGCCGGCGGCGACCCCGACCGCGCCCTCTCCCTCCTCGACTCCCTCCCGCCCGGCTTCCTCCCACTCCGCGAGTCCCTCCTCCTCCCGCTGCTCCGATCTTTGCCTCCCGGTCGCGCCCTCCACCTGCTCGACCAATTGCCCCGCCGCTTCGGTGTTCAGCCGTCGTTCCGCTCCTACAACGTCGTCCTGTCAGTGCTCGCCAGGGCGGACTGCCACGCCGACGCGCTCGCGCTCTACCGCCGGATGGTCCACAGGGACCGCGTCCCGCCCACCACCTTCACGTTCGGCGTCGCCGCGCGGGCGCTCTGCCGCCTCGGCCGCGCCGACGAGGCGCTCGCGCTGCTCCGCGGGATGGCGCGGCACGGGTGCGTCCCCGACGCCGTGCTCTACCAGACGGTGATCCACGCGCTGTGCGATCAGGGAGGGGTCACCGAGGCCGCCACGCTGCTCAACGAGATGCTCCTCATGGGTTGCGCCGCGGACGTGAACACGTTCGACGATGTCGTGCGTGGGATGTGCGGCCTCGGGCGGGTACGCGAGGCGGCGAGGCT
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Protein seq | ATTELALPQKSDTNGGAPPASPPAVRRRRRGDVVAGAPHAVRPLPPPRHARLPPAHPAPPRPPPRAPALPGHLPPPPHLVRLLPPGTLLPPAPPSPRRRRPRPRPLPPRLPPARLPPTPRVPPPPAAPIFASRSRPPPARPIAPPLRCSAVVPLLQRRPVSARQGGLPRRRARALPPDGPQGPRPAHHLHVRRRRAGALPPRPRRRGARAAPRDGAARVRPRRRALPDGDPRAVRSGRGHRGRHAAQRDAPHGLRRGREHVRRCRAWDVRPRAGTRGGEA
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.621820 | 0.963248 | 1.400222 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g22370 | RBH | 0.399358 | 0.508618 | 0.293834 |
Nipponbare | IRGSP 1.0 | RAP-db | Os10g0368902 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008280 | RBH | 0.344636 | 0.925294 | 1.784649 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008330 | RBH | 0.0 | 0.0 | 1.163582 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008200 | RBH | 0.193897 | 0.0 | 3.830713 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0008520 | RBH | 0.114894 | 0.048563 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008360 | RBH | 1.457552 | 2.375879 | 1.069018 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0200100 | RBH | 0.8965975 | 3.8758765 | 1.5284435 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008340 | RBH | 0.000000 | 0.000000 | 0.409516 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0214400 | RBH | 0.801005 | 3.4962755 | 3.870386 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0008130 | RBH | 0.037622 | 0.055181 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008160 | RBH | 0.076481 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008550 | RBH | 1.920880 | 3.984583 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0008100 | RBH | 0.174551 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008650 | RBH | 0.029898 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008360 | RBH | 0.155122 | 0.896932 | 0.000000 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008360 | RBH | 0.388466 | 3.105985 | 1.114935 |