Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0008100 | OGI:10038980 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:13183930-13186733 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcactcgctgtgcgtcctttctggcatctgttcctgcacatctgctggcagcccaacagctcccgatgaggctggcgcgcgcttgcgcctgcggtacacaacacccacttacccagaactgaagcatagaatggatgttgaacccacagcaggaccaggatcaatggataaggaaacacctccaaccttaggagcagaatcaatgaaactggtagactgttctaataaaatgttagctttgcattcattggccctactgcaatacagataggaatctgagatgagctgaaagatacatgaaaagtaagcatctgccatcttaggaacaaattgatctggacctattttctctttcttctttacaaaaatcaaaggtatggatggtgggccaagatctcaacagtcagcactattgttctaattttacacgagttgaaatttaagggttattaccttttgtatgtaagtacaacttgaaattcttgtcaggaagaatctgcattattctacgatcacccactggacatacagctgccatctgtagaacaatgtcaacaaaagggttaacagatggaaagtacacactttcaacaagaggggaaatacataccaggtcaccgagcatgatgaaatcagcgatgaacaccatgatatgcccatttcattttgatcgaacaacggatgctacggtaacttcaaaagccgcaacaaccatcaaatataacatagagaagcacatgtttctaatacacttcaacctggtcagccaaaatggtaagtggcttcctgacaaagttttgtaccataattccccatgtgcgctcattaggtactattccaccacttactgccctgtttagaagcatagcagcatcatcaagcaatctgactttgcagtgccaactaatgagaatattgtatgtaataatatcaggatgcacattttcattgtgtagcttctctaggagattgagagcggcgtgcatccatcccattttgcataatccatttatgagtgtattgtaagtgacaatgtcaggagcaagcccttgattcaacatctgctttgagagctctagagcatcacgtacccttctctccttacaaagctcactgatcagaatgttgtatgaaacattatttggcttaatacccttttctgccatttcttcaagaagcacaaggctccgatcaacattcccatctttgcacatggcttttatcagcccgttgtagctaacaacatcaagtgagcaaccatgaagtatcatttccttcgcaagtctcacagcatcctgccaccttccatcacgcagcagtgcatgaatgattgtattgtaagttataccatttgcaacaacaccctcctcaagtaagttttcaaacatatgttctgcttcctccatctgttcattgttgcacaagtgataaattattgtattatatgagcaaatatcagggttacacccttgacttctcatctcttgaatgagccccatcgcctcgtccatcctgccatccttgcatagtgcatatatcattccattgtacccttgtgaattcaaagtcaagccctttgctgacatctcctccagcaatgctcttgtgtcatcccacatgccattcttgcaaaaggaatgtagcacgattgtgtaggtgactacgttcggagcaaatcccttcttctccatttctctaagcaatcgcacagcggaaccgatccttccaagcttgcaaagaccatgcatcaatatactgtaggtgtgcgcgtctggttggcagcccttcaaacccattgtctcatacagctctgtagcctctgctagcttcccctctgcgagacagccgccaatcaccgtgttaaacaacacgacattcagctccggcaccctcccgagcattgcccgtgcctcatcagcctgcctcaccctgcacagtccctgcaggaggaaaccatacgtcatcacgccgggcatgcagcctttcgtcatcatcctgtcaaccagcctcgccgcctcgcgtacccgcccgaggccgcacatcccacgcacgacatcgtcgaacgtgttcacgtccgcggcgcaacccatgaggagcatctcgttgagcagcgtggcggcctcggtgacccctccctgatcgcacagctcgtggatcaccgtctggtagagcacggcgtcggggacgcacccgtgccgcgccatcccgcggagcagcgcgagcgcctcgttggcgcggccgaggcggcagagcgcccgcgcggcgacgccgaacgtgaaggtggtgggcgggacgcggtccctgtggaccatccggcggtagagcgcgagcgcgtcggcgtggcagtccgccctggcgagcactgacaggacgacgttgtaggagcggaacgacggctgaacaccgaagcggcggggcaattggtcgagcaggtggagggcgcgaccgggaggcaaagatcggagcagcgggaggaggagggactcgcggagtgggaggaagccgggcgggagggagtcgaggagggagagggcgcggtcggggtcgccgccggcgaggagagggcggagcgggagggaggagagtgccgggtgggaggaggcgtaccaggtgaggaggaggagggaggtggccggggagagcgggagcgcgaggaggcggccgaggcggcgcggggtgagcgggcgggaggcgagcgtggcgcggaggcgggagaggtcgaacggcgtgaggagctccggccacgacgtcgccgcggcgccggcggcggacggcgggaggcgaggcgggtggtgctccgccat
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| CDS seq | atggcggagcaccacccgcctcgcctcccgccgtccgccgccggcgccgcggcgacgtcgtggccggagctcctcacgccgttcgacctctcccgcctccgcgccacgctcgcctcccgcccgctcaccccgcgccgcctcggccgcctcctcgcgctcccgctctccccggccacctccctcctcctcctcacctggtacgcctcctcccacccggcactctcctccctcccgctccgccctctcctcgccggcggcgaccccgaccgcgccctctccctcctcgactccctcccgcccggcttcctcccactccgcgagtccctcctcctcccgctgctccgatctttgcctcccggtcgcgccctccacctgctcgaccaattgccccgccgcttcggtgttcagccgtcgttccgctcctacaacgtcgtcctgtcagtgctcgccagggcggactgccacgccgacgcgctcgcgctctaccgccggatggtccacagggaccgcgtcccgcccaccaccttcacgttcggcgtcgccgcgcgggcgctctgccgcctcggccgcgccaacgaggcgctcgcgctgctccgcgggatggcgcggcacgggtgcgtccccgacgccgtgctctaccagacggtgatccacgagctgtgcgatcagggaggggtcaccgaggccgccacgctgctcaacgagatgctcctcatgggttgcgccgcggacgtgaacacgttcgacgatgtcgtgcgtgggatgtgcggcctcgggcgggtacgcgaggcggcgaggctggttgacaggatgatgacgaaaggctgcatgcccggcgtgatgacgtatggtttcctcctgcagggactgtgcagggtgaggcaggctgatgaggcacgggcaatgctcgggagggtgccggagctgaatgtcgtgttgtttaacacggtgattggcggctgtctcgcagaggggaagctagcagaggctacagagctgtatgagacaatgggtttgaagggctgccaaccagacgcgcacacctacagtatattgatgcatggtctttgcaagcttggaaggatcggttccgctgtgcgattgcttagagaaatggagaagaagggatttgctccgaacgtagtcacctacacaatcgtgctacattccttttgcaagaatggcatgtgggatgacacaagagcattgctggaggagatgtcagcaaagggcttgactttgaattcacaagggtacaatggaatgatatatgcactatgcaaggatggcaggatggacgaggcgatggggctcattcaagagatgagaagtcaagggtgtaaccctgatatttgctcatataatacaataatttatcacttgtgcaacaatgaacagatggaggaagcagaacatatgtttgaaaacttacttgaggagggtgttgttgcaaatggtataacttacaatacaatcattcatgcactgctgcgtgatggaaggtggcaggatgctgtgagacttgcgaaggaaatgatacttcatggttgctcacttgatgttgttagctacaacgggctgataaaagccatgtgcaaagatgggaatgttgatcggagccttgtgcttcttgaagaaatggcagaaaagggtattaagccaaataatgtttcatacaacattctgatcagtgagctttgtaaggagagaagggtacgtgatgctctagagctctcaaagcagatgttgaatcaagggcttgctcctgacattgtcacttacaatacactcataaatggattatgcaaaatgggatggatgcacgccgctctcaatctcctagagaagctacacaatgaaaatgtgcatcctgatattattacatacaatattctcattagttggcactgcaaagtcagattgcttgatgatgctgctatgcttctaaacagggcaatggcagctgtatgtccagtgggtgatcgtagaataatgcagattcttcctgacaagaatttcaagttgcgcaagcgcgcgccagcctcatcgggagctgttgggctgccagcagatgtgcaggaacagatgccagaaaggacgcacagcgagtga
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| Protein seq | MAEHHPPRLPPSAAGAAATSWPELLTPFDLSRLRATLASRPLTPRRLGRLLALPLSPATSLLLLTWYASSHPALSSLPLRPLLAGGDPDRALSLLDSLPPGFLPLRESLLLPLLRSLPPGRALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHELCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQILPDKNFKLRKRAPASSGAVGLPADVQEQMPERTHSE |
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| Function | Pentatricopeptide repeat-containing protein At5g64320, mitochondrial [UniProtKB/Swiss-Prot:Q9FMF6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0008100 | OsLiXu_10g0008100.01 | Chr10 | 13183930 | 13186733 | - | NAM | ||
| CDS seq | atggcggagcaccacccgcctcgcctcccgccgtccgccgccggcgccgcggcgacgtcgtggccggagctcctcacgccgttcgacctctcccgcctccgcgccacgctcgcctcccgcccgctcaccccgcgccgcctcggccgcctcctcgcgctcccgctctccccggccacctccctcctcctcctcacctggtacgcctcctcccacccggcactctcctccctcccgctccgccctctcctcgccggcggcgaccccgaccgcgccctctccctcctcgactccctcccgcccggcttcctcccactccgcgagtccctcctcctcccgctgctccgatctttgcctcccggtcgcgccctccacctgctcgaccaattgccccgccgcttcggtgttcagccgtcgttccgctcctacaacgtcgtcctgtcagtgctcgccagggcggactgccacgccgacgcgctcgcgctctaccgccggatggtccacagggaccgcgtcccgcccaccaccttcacgttcggcgtcgccgcgcgggcgctctgccgcctcggccgcgccaacgaggcgctcgcgctgctccgcgggatggcgcggcacgggtgcgtccccgacgccgtgctctaccagacggtgatccacgagctgtgcgatcagggaggggtcaccgaggccgccacgctgctcaacgagatgctcctcatgggttgcgccgcggacgtgaacacgttcgacgatgtcgtgcgtgggatgtgcggcctcgggcgggtacgcgaggcggcgaggctggttgacaggatgatgacgaaaggctgcatgcccggcgtgatgacgtatggtttcctcctgcagggactgtgcagggtgaggcaggctgatgaggcacgggcaatgctcgggagggtgccggagctgaatgtcgtgttgtttaacacggtgattggcggctgtctcgcagaggggaagctagcagaggctacagagctgtatgagacaatgggtttgaagggctgccaaccagacgcgcacacctacagtatattgatgcatggtctttgcaagcttggaaggatcggttccgctgtgcgattgcttagagaaatggagaagaagggatttgctccgaacgtagtcacctacacaatcgtgctacattccttttgcaagaatggcatgtgggatgacacaagagcattgctggaggagatgtcagcaaagggcttgactttgaattcacaagggtacaatggaatgatatatgcactatgcaaggatggcaggatggacgaggcgatggggctcattcaagagatgagaagtcaagggtgtaaccctgatatttgctcatataatacaataatttatcacttgtgcaacaatgaacagatggaggaagcagaacatatgtttgaaaacttacttgaggagggtgttgttgcaaatggtataacttacaatacaatcattcatgcactgctgcgtgatggaaggtggcaggatgctgtgagacttgcgaaggaaatgatacttcatggttgctcacttgatgttgttagctacaacgggctgataaaagccatgtgcaaagatgggaatgttgatcggagccttgtgcttcttgaagaaatggcagaaaagggtattaagccaaataatgtttcatacaacattctgatcagtgagctttgtaaggagagaagggtacgtgatgctctagagctctcaaagcagatgttgaatcaagggcttgctcctgacattgtcacttacaatacactcataaatggattatgcaaaatgggatggatgcacgccgctctcaatctcctagagaagctacacaatgaaaatgtgcatcctgatattattacatacaatattctcattagttggcactgcaaagtcagattgcttgatgatgctgctatgcttctaaacagggcaatggcagctgtatgtccagtgggtgatcgtagaataatgcagattcttcctgacaagaatttcaagttgcgcaagcgcgcgccagcctcatcgggagctgttgggctgccagcagatgtgcaggaacagatgccagaaaggacgcacagcgagtga
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| Protein seq | MAEHHPPRLPPSAAGAAATSWPELLTPFDLSRLRATLASRPLTPRRLGRLLALPLSPATSLLLLTWYASSHPALSSLPLRPLLAGGDPDRALSLLDSLPPGFLPLRESLLLPLLRSLPPGRALHLLDQLPRRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHELCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVCPVGDRRIMQILPDKNFKLRKRAPASSGAVGLPADVQEQMPERTHSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.174551 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0368902 | RBH | 0.621820 | 0.963248 | 1.400222 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g22370 | RBH | 0.399358 | 0.508618 | 0.293834 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0368902 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0008280 | RBH | 0.344636 | 0.925294 | 1.784649 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0008330 | RBH | 0.0 | 0.0 | 1.163582 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0008200 | RBH | 0.193897 | 0.0 | 3.830713 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0008520 | RBH | 0.114894 | 0.048563 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0008360 | RBH | 1.457552 | 2.375879 | 1.069018 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0200100 | RBH | 0.8965975 | 3.8758765 | 1.5284435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0008340 | RBH | 0.000000 | 0.000000 | 0.409516 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0214400 | RBH | 0.801005 | 3.4962755 | 3.870386 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0008130 | RBH | 0.037622 | 0.055181 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0008160 | RBH | 0.076481 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0008550 | RBH | 1.920880 | 3.984583 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0056160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0008650 | RBH | 0.029898 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G008360 | RBH | 0.155122 | 0.896932 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0008360 | RBH | 0.388466 | 3.105985 | 1.114935 |
