Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0196000 | OGI:10022290 | 4/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:6698731-6702375 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTTTGCCCACGTACATACACCGACAGCCATGGACACCCCGGCGTTGCTCCCGTTGGCGCTTGCCCTTGTTGCCATCCCGATCACCATCCTTCTTGATCTTCAATCGGATCCGCCTCGGCAGGCTGTCCCCCGGGCCCCGGGCGTGGCCGGTGGTAACCTGTTCGACATCACGCTGGTGCGGTGCCGGTGCTTCATGGAGTGGGCAGGCAAGTACGGACCCATCATGACGGTCTGGCTGGGCACGTCGCCGACGATCGTGGTGTCGACGTCGGAGCTAGCCAGAGAGGTGTTCAAGAACGTACAATGATCAGCAGCTCGCCGACCGCCCGCGGAACCACTCGGCGGAGCGGTTAAGCCGCGGCGGCACGGACCTCATCTGGGCGGACTATGGCCCGCACTACGTCAAGGTGCGGAAGCTGTGCAACCTGGAGCTCTTTGCGCCGCGTCGGATGGAGGCTCTCAGGCCCATCAGCGAGGACGAGGTCAATGCCATGGTAGAGTCCATCTACAGAGCCGTCACTGCTCCTGGTAGGTTGTACAGCACGATGAATGAATTTAATGTGTTTTGCACGCAACATCATGTGTCTTAACAAACGCTATTATTAGATTGATTCATAATTACATAGTTGAGTGTGGCCCGTGTAATTGCGCGGCAAGCATCCGTATAAAATATTTTGTTTACATATATTTTTCTTTAAAATTTGTTAAGTAGCCATATAGTTATATTAGGATTTCAAAAGATCAAATTTTATCATTGTCAAGTTTTTTATTTTATAATTTTTAAATGTCACGTTAGCCGCCAATCCTTTTCTCCTGCCCGACCTGCCACAGCTTTTATTATACTTTAAAAATTGGATAGTTTGTCTAGTTCATTGTCTTGTCGAATTTTGATTTGTAGTTTTGGAAGTCCCTTTAAACGTCAACATTGTACTCCTCTACGGTGTACTAACTTTCAACCTCTTTATTATCATTAGGATTTATGAAATGGAACATGATTATAGTTGGATTTTCGTTTTCTTTTTACTTCCAAGAAGTCCTGTCAACCATCACCACCGTTCTCTTTTAATTTACAGCCTACCCAAAATCTTTCCTTCTAATCATCCTTTGGTTTCTAAATATTGAATCTAGTAATCATTAGGAGTTTTGGTTTTTATTTTTAATATCCCATCAACCTCTACCAACCCTATCTTTATGGTTTGTCTGATGTCCCTTTTGCATTTATGGTCACTTACCACCGTTATGTTATAGATGTAATATGTTCTATTAAAATATCTTATCTGTTATTTATAATTTATATTCCTACTCAACCCTCATTTTAGTTTTTCTAATCACATAATTTAATTTATTTTTATTTCTAACTTTAGTTAATTCCGTATTGTAGTCTATATGAATTGTTATTTCATCTATTTCCTATTTAAGTTATTTGTAAATAATATTCATTCTCAAACTCTCATTTTTATTTGTCAACTTTCAGAATTTATAAAATTTTTATCCCGGTTTTTCATTAATCTTGTGTTGTTTTAATAGTTTTTATTTTTATGATGAATTTAGTTGTTGATAAATTGTATACATGAACTCATATTTTGATTTTTCTAATTTCGAAATTTATTTATTTATTATTCTAATTTTAATTAATCTCGTATTTTGTACTACGATTGACTATTCTTTTCATATTACACTTTTTAATTTTCAAATTTCAGTTATTTCTAAATTGTATTCAAGCTTTAACTCTGATTTTTATTTACATATTTTCAGAATTTATTTTATTCTTTATTCTAAATTTTAATTATTCTTTAGTTGTGTTCTATATGGAGTCTTATTATCATTCAGAATTGACTTAATTTCGGGATTTATTGTATTACTTATTTTGAATTTTGATTATTACTTATTTAAATATTCCAAACTGCTGATTATTATTTCAAAATTTGCTTAGAAACTACAATTCAAGGCCCAACGCACTGTGGAGCCTGGTAGCACGGCTTCAAGTGCTAATATGCCAAATAGGATCTCAATATGTTCATTGCGAACAACACAGTTCTTGGAATATGTGCAATGAAAATCAATTACTCCTTGCATTGTGAGAATTAATACTACGTACATTCTCTCTATCTCTTATTATAAGTCATTTCTACTTTGTTCTTACTAAAATTTCTTTGATTTTTGACCAAATTTCTAGAAAAATACAATATCATTTTGAAAACAGAACTAACGTATTATCAAAATATATTATATATTGGTTTTAACAAAAACTGGTTTACTGGTGTAGATGTTACTAAATTTTTATGTAAATTTGATTAAACTTAAAATAGTTATTAGGAAAAAGTCAAAGCTACGTATAATATGAAATGAAGGGAGTATGGAATAATAAAACGTACTGTTTTAGTTTCCTTATACTGAAGGTGAAGAAGGGAAGCCCATCGGGGTGCGGAAGCATCTGTCAATGGTCGCCTTTAATAACATCACGCGGCTGACCTTTGGGAAGCGGTTCATAGTTGCCGCTGGCGAGCTGGACGAGCAAGGGTGCGAACAGAAGGCGATTGTGAAAGCCGGGATCAAGATCGGCGCGTCGCTGCCCATCGCGGAGCACATCCTGGTGCTGCGGTGGCTGAACCTGGTGGATGAGGAGCTCTACAACGCCCACAGCGCAAGGCGAGACCGCTTCACCAGGCGGATCATGGACGAGCACGCCCGCGAGCTCGAGCGGCACGGCGCCAAGCAGCACTTCGTTCACCCTCAGGGACCAGTACGACCTCAGCGACGACACCGTACGTCATCGGCCTCCTCTGGGACATGATCGCTGCCGGCTCGGACACGGCGGTGATAACGGCGGAGTGGGCGATGGCGGAGCTGGTGAGGAATCCAAGGGTGCAGATGAAGGCACAAGAGGAGCTGGACCGCGTCATCGGCCGTGGTCGCGTCATGTTGGAGGCAGACATCCCGAACTTGCCCTACTTGCAGGCCGTCGTGAAGGAGTCGTTCCGGCTGCACACACCGACGCCGCTGATGCTCCCACACAAGGCCAGCGCCGCGTCAAGATCGCCGGCTACGATGTCCCCAAGGGCGCCAATGTCATCGTCAATGTGTGGGCCGTAGGACGCGACCTCAGTGTCTGGGACAGCCCACTGCCCCACTCGAGTACCGGCCGGAGCGTTTCCTCGAGGAGAGCATCGACATCAAGGGCAGCGACTACCGCGTCCTCCCCTTCGGCGCTGGCCGTCGGGTTTGCCCCGGCGCACAGCTCGGGATCAGCCTCGTGGCATCCATGATCGGCCACCTGCTGCACCAGTTCACATGGGCGCTGCCAGACGGCACATGGCCGGAGGACCTCGACATGATGGAGTCCTCAGGGCTCGTCACCTTCATGGCCACGCCGTTGCAGGTTGTTGCCATGCCACGCCTCGACAAGGAGGAGCTGTTCAAGCGAGTGCCAGTCGACATGTCCTGATCGACCTGCCGTTCATTCCAAATACAAGGGGCAGACCAAGGTCCTGGATAAACCTAGGTCCGCCTAGCATATGAATCGACATCCAAGGACATTTTTAATGTTTTGTTGGGCATGGTAGCACGCCAGCACTTACCTTATGCTCGCCAGCACTCACCCTCTGTTTTAAAGGTGTCACCTGCTAATCCATCTACTTCCTTAG
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| CDS seq | ATGGACACCCCGGCGTTGCTCCCGTTGGCGCTTGCCCTTGTTGCCATCCCGATCACCATCCTTCTTGATCTTCAATCGGATCCGCCTCGGCAGGCTGTCCCCCGGGCCCCGGGCGTGGCCGGTGGTAACCTGTTCGACATCACGCTGGTGCGGTGCCGGTGCTTCATGGAGTGGGCAGGCAAGTACGGACCCATCATGACGGTCTGGCTGGGCACGTCGCCGACGATCGTGGTGTCGACGTCGGAGCTAGCCAGAGAGGTGTTCAAGAACGTACAATGA |
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| Protein seq | MDTPALLPLALALVAIPITILLDLQSDPPRQAVPRAPGVAGGNLFDITLVRCRCFMEWAGKYGPIMTVWLGTSPTIVVSTSELAREVFKNVQ |
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| Function | Cytochrome P450 98A1 [UniProtKB/Swiss-Prot:O48956] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0196000 | OsNip_10t0196000-01 | Chr10 | 6698731 | 6702375 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACACCCCGGCGTTGCTCCCGTTGGCGCTTGCCCTTGTTGCCATCCCGATCACCATCCTTCTTGATCTTCAATCGGATCCGCCTCGGCAGGCTGTCCCCCGGGCCCCGGGCGTGGCCGGTGGTAACCTGTTCGACATCACGCTGGTGCGGTGCCGGTGCTTCATGGAGTGGGCAGGCAAGTACGGACCCATCATGACGGTCTGGCTGGGCACGTCGCCGACGATCGTGGTGTCGACGTCGGAGCTAGCCAGAGAGGTGTTCAAGAACGTACAATGA
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| Protein seq | MDTPALLPLALALVAIPITILLDLQSDPPRQAVPRAPGVAGGNLFDITLVRCRCFMEWAGKYGPIMTVWLGTSPTIVVSTSELAREVFKNVQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.586671 | 0.268943 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0196000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005380 | SBH | 0.0 | 8.925895 | 4.478941 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005210 | SBH | 0.0 | 0.612483 | 1.093252 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005180 | RBH | 0.0 | 0.0 | 0.495582 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005520 | SBH | 0.0 | 0.076828 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0005210 | SBH | 0.0 | 0.0 | 3.476992 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005420 | SBH | 0.066913 | 0.543862 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0124000 | SBH | 1.3037105 | 0.025075 | 0.025286 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0005280 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0005340 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0005450 | SBH | 0.628067 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0005190 | SBH | 0.383523 | 0.0 | 0.096081 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005550 | SBH | 0.233409 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G005390 | RBH | 0.0 | 0.847074 | 1.262261 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005410 | RBH | 0.095918 | 7.504684 | 0.480207 |
