Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0005550 | OGI:10022230 | 3/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:7388178-7391586 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacaccccggcgttgctcccgttggcgcttgcccttgttgccatcccgatcaccatccttctcttcaatcggatccgcctcggcaggctatcccccgggccccgggcgtggccggtggtgggtaacctgttcgacatcacgctggtgcggtgccggtgcttcatggagtgggcaggcaagtacggacccatcatgacggtctggctgggcacgtcgccgacgatcgtggtgtcgacgtcggagctagccagagaggtgttcaagaacgtacaatgatcagcagctcgccgaccgctccgccgaccgcccgcggaaccactcggcggagcggttaagccgcggcggcacggacctcatctgggcggactatggcccgcactacgtcaaggtgcggaagctgtgcaacctggagctctttgcgccgcgtcggatggaggctctcaggcctatccgcgaggacgaggtcactgccatggtagagtccatctacagagccgtcactgctcctggtaggttgtacagcacgatgaatgaatttaatgtgttttgcacgcaacatcatgtgtcttaacaaacgctattattagattgattcataattacatagttgagtgtggcccgtgtaatattgcggcaagcatccgtataaaatattttgtttacatatatttttctttaaaatttgttaagtagccatataattatattaggatttcaaaagatcaaattttatcattatcaagtttttaattttataatttttaaatgtcacgttagccgccaatccttttctcctgcccgacctgccacagcttttattatactttaaaaatcggatagtttgtctagttcattgtcttgtcgaattttgatttgtagttttggaaatccctttaaacgtcaacattgtactcctctacagtgtactaactttcaacctctttattatcattaggatttattaaatggaacatgattatagttggattttcgttttctttttacttccaagaagtcctgtcaaccatcaccaccgttctctccttctaatcatcctttggtttctaaatattgaatctagtaatcattaggagttttggtttatatttttaatatcccatcaacctctaccaaccctatctttatggtttgtctgatgtcccttttgcatttatggtcacttaccaccgttatgttctagatgtaatatgttctattaaaatatcttatctgttatttataatttatattcctactcaaccctcattttagtttttctaatcacataatttaatttatttttatttctaactttagttaattccgtattgtagtctatatgaattgttatttcatctatttcctatttaagttatttgtaaataatattcattctcaaactctcatttttatttgtcaactttcagaatttataaaatttttatcccggtttttcattaatcttgtgttgttttaatagtttttatttttatgacgaatttagttgttgataaattgtatacatgaactcatattttgatttttctaatttctaaatttatttatttattattctaattttaattaatctcgtattttgtactacgattgactattcttttcatattacactttttaattttcaaatttcagttatttctaaattgtattgaagctttaactctgatttttatttacatattttcagaatttattttattattgattctaaattttaattattctttagttgtgttctatatggagtcttattatcattcagaattgacttaatttcgggatttattgtattacttattttgaattttgattattacttatttaaatattccaaactgctgattattatttcaaaatttgcttagaaactactattcaaggcccaacgcactgtggagcctggtagcacggcttcaagtgctaatatgccaaataggatctcaatatgttcattgcgaacaacacagttcttggaatatgtgcaatgaaaatcaattactccttgcattgtgagaattaatactacgtacattctctctatctcttattataagtcatttctactttgttcttactaaaatttctttgatttttgaccaaatttctagaaaaatacaatatcattttgaaaacagaactaacgtattatcaaaatatattatatattggttttaacaaaaactggtttactggtgtagatgttactaaatttttatgtaaatttgattaaacttaatatagttattaggaaaaaagtcaaatctacgtataatatgaaatgaagggagtatggaataataaaacgtactgttttagtttccttatactgaaggtgaagaagggaagcccatcggggtgcggaagcatctgtcaatggtcgcctttaataacatcacgcggctgacctttgggaagcggttcatagttgccgctggcgagctggacgagcaagggtgcgaactgaaggcgattgtgaaagccgggatcaagatcggcgcgtcgctgcccatcgcggagcacatcctggtgctgcggtggctgaacctggtggatgaggagctctacaacgcccacagcgcaaggcgagaccgcttcaccaggcggatcatggacgagcacgcccgcgagctcgagcggcacggcgccaagcagcacttcgttgacgccctcttcaccctcagggaccagtacgacctcagcgacgacaccgtcatcggcctcctctgggacatgatcgctgccggctcggacacggcggtgataatggcggagtgggcgatggcggagctggtgaggaatccaagggtgcagatgaaggcacaagaagagctggaccgcgtcatcggccgtggtcgcgtcatgttggaggcagacatcccgaacttgccctacttgcaggccgtcgtgaaggagtcgttccggctgcacccaccgacgccgctgatgctcccacacaaggccagcgccgcgtcaagatcgccggctacgatgtccccaagggcgccaatgtcatcgtcaatgtgtgggccgtaggacgcgacctcagtgtctgggacagcccactgccccactcgagtaccggccggagaggttcctcgaggagagcatcgacatcaagggcagcgactaccgcgtcctccccttcggcgctggccgtcgggtttgccccggcgcacagctcgggatcagcctcgtggcatccatgatcggccacctgctgcaccagttaacatgggcgctgccagacggcacatggccggaggacctcgacatgatggagtccccagggctcgtcaccttcatggccacgccgttgcaggttgttgccatgccacgcctcgacaaggaggagctgttcaagcgagtgccagtcgacatgtcctga
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| CDS seq | atggacaccccggcgttgctcccgttggcgcttgcccttgttgccatcccgatcaccatccttctcttcaatcggatccgcctcggcaggctatcccccgggccccgggcgtggccggtggtgggtaacctgttcgacatcacgctggtgcggtgccggtgcttcatggagtgggcaggcaagtacggacccatcatgacggtctggctgggcacgtcgccgacgatcgtggtgtcgacgtcggagctagccagagaggtgttcaagaacctcgccgaccgctccgccgaccgcccgcggaaccactcggcggagcggttaagccgcggcggcacggacctcatctgggcggactatggcccgcactacgtcaaggtgcggaagctgtgcaacctggagctctttgcgccgcgtcggatggaggctctcaggcctatccgcgaggacgaggtcactgccatggtagagtccatctacagagccgtcactgctcctggtaggttgtacagcacgatgaatgaatttaatcggttcatagttgccgctggcgagctggacgagcaagggtgcgaactgaaggcgattgtgaaagccgggatcaagatcggcgcgtcgctgcccatcgcggagcacatcctggtgctgcggtggctgaacctggtggatgaggagctctacaacgcccacagcgcaaggcgagaccgcttcaccaggcggatcatggacgagcacgcccgcgagctcgagcggcacggcgccaagcagcacttcgttgacgccctcttcaccctcagggaccagtacgacctcagcgacgacaccgtcatcggcctcctctgggacatgatcgctgccggctcggacacggcggtgataatggcggagtgggcgatggcggagctggtgaggaatccaagggtgcagatgaaggcacaagaagagctggaccgcgtcatcggccgtggtcgcgtcatgttggaggcagacatcccgaacttgccctacttgcaggccgtcgtgaaggagtcgttccggctgcacccaccgacgccgctgatgctcccacacaaggccagcgccgcgtcaagatcgccggctacgatgtccccaagggcgccaatgtcatcgtcaatgacgcgacctcagtgtctgggacagcccactgccccactcgagtaccggccggagaggttcctcgaggagagcatcgacatcaagggcagcgactaccgcgtcctccccttcggcgctggccgtcgggtttgccccggcgcacagctcgggatcagcctcgtggcatccatgatcggccacctgctgcaccagttaacatgggcgctgccagacggcacatggccggaggacctcgacatgatggagtccccagggctcgtcaccttcatggccacgccgttgcaggttgttgccatgccacgcctcgacaaggaggagctgttcaagcgagtgccagtcgacatgtcctga
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| Protein seq | MDTPALLPLALALVAIPITILLFNRIRLGRLSPGPRAWPVVGNLFDITLVRCRCFMEWAGKYGPIMTVWLGTSPTIVVSTSELAREVFKNLADRSADRPRNHSAERLSRGGTDLIWADYGPHYVKVRKLCNLELFAPRRMEALRPIREDEVTAMVESIYRAVTAPGRLYSTMNEFNRFIVAAGELDEQGCELKAIVKAGIKIGASLPIAEHILVLRWLNLVDEELYNAHSARRDRFTRRIMDEHARELERHGAKQHFVDALFTLRDQYDLSDDTVIGLLWDMIAAGSDTAVIMAEWAMAELVRNPRVQMKAQEELDRVIGRGRVMLEADIPNLPYLQAVVKESFRLHPPTPLMLPHKASAASRSPATMSPRAPMSSSMTRPQCLGQPTAPLEYRPERFLEESIDIKGSDYRVLPFGAGRRVCPGAQLGISLVASMIGHLLHQLTWALPDGTWPEDLDMMESPGLVTFMATPLQVVAMPRLDKEELFKRVPVDMS |
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| Function | Cytochrome P450 98A1 [UniProtKB/Swiss-Prot:O48956] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0005550 | OsLaMu_10g0005550.01 | Chr10 | 7388178 | 7391586 | + | NAM | ||
| CDS seq | atggacaccccggcgttgctcccgttggcgcttgcccttgttgccatcccgatcaccatccttctcttcaatcggatccgcctcggcaggctatcccccgggccccgggcgtggccggtggtgggtaacctgttcgacatcacgctggtgcggtgccggtgcttcatggagtgggcaggcaagtacggacccatcatgacggtctggctgggcacgtcgccgacgatcgtggtgtcgacgtcggagctagccagagaggtgttcaagaacctcgccgaccgctccgccgaccgcccgcggaaccactcggcggagcggttaagccgcggcggcacggacctcatctgggcggactatggcccgcactacgtcaaggtgcggaagctgtgcaacctggagctctttgcgccgcgtcggatggaggctctcaggcctatccgcgaggacgaggtcactgccatggtagagtccatctacagagccgtcactgctcctggtaggttgtacagcacgatgaatgaatttaatcggttcatagttgccgctggcgagctggacgagcaagggtgcgaactgaaggcgattgtgaaagccgggatcaagatcggcgcgtcgctgcccatcgcggagcacatcctggtgctgcggtggctgaacctggtggatgaggagctctacaacgcccacagcgcaaggcgagaccgcttcaccaggcggatcatggacgagcacgcccgcgagctcgagcggcacggcgccaagcagcacttcgttgacgccctcttcaccctcagggaccagtacgacctcagcgacgacaccgtcatcggcctcctctgggacatgatcgctgccggctcggacacggcggtgataatggcggagtgggcgatggcggagctggtgaggaatccaagggtgcagatgaaggcacaagaagagctggaccgcgtcatcggccgtggtcgcgtcatgttggaggcagacatcccgaacttgccctacttgcaggccgtcgtgaaggagtcgttccggctgcacccaccgacgccgctgatgctcccacacaaggccagcgccgcgtcaagatcgccggctacgatgtccccaagggcgccaatgtcatcgtcaatgacgcgacctcagtgtctgggacagcccactgccccactcgagtaccggccggagaggttcctcgaggagagcatcgacatcaagggcagcgactaccgcgtcctccccttcggcgctggccgtcgggtttgccccggcgcacagctcgggatcagcctcgtggcatccatgatcggccacctgctgcaccagttaacatgggcgctgccagacggcacatggccggaggacctcgacatgatggagtccccagggctcgtcaccttcatggccacgccgttgcaggttgttgccatgccacgcctcgacaaggaggagctgttcaagcgagtgccagtcgacatgtcctga
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| Protein seq | MDTPALLPLALALVAIPITILLFNRIRLGRLSPGPRAWPVVGNLFDITLVRCRCFMEWAGKYGPIMTVWLGTSPTIVVSTSELAREVFKNLADRSADRPRNHSAERLSRGGTDLIWADYGPHYVKVRKLCNLELFAPRRMEALRPIREDEVTAMVESIYRAVTAPGRLYSTMNEFNRFIVAAGELDEQGCELKAIVKAGIKIGASLPIAEHILVLRWLNLVDEELYNAHSARRDRFTRRIMDEHARELERHGAKQHFVDALFTLRDQYDLSDDTVIGLLWDMIAAGSDTAVIMAEWAMAELVRNPRVQMKAQEELDRVIGRGRVMLEADIPNLPYLQAVVKESFRLHPPTPLMLPHKASAASRSPATMSPRAPMSSSMTRPQCLGQPTAPLEYRPERFLEESIDIKGSDYRVLPFGAGRRVCPGAQLGISLVASMIGHLLHQLTWALPDGTWPEDLDMMESPGLVTFMATPLQVVAMPRLDKEELFKRVPVDMS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.233409 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0196100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g12080 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0196100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005380 | SBH | 0.0 | 8.925895 | 4.478941 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005210 | SBH | 0.0 | 0.612483 | 1.093252 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005190 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005520 | SBH | 0.0 | 0.076828 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0005210 | RBH | 0.0 | 0.0 | 3.476992 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0116600 | SBH | 8.4818525 | 1.951497 | 0.198296 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005410 | SBH | 0.0 | 0.0 | 0.381341 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0123600 | SBH | 4.6847785 | 0.0315265 | 0.041515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0005280 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0005340 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0005450 | RBH | 0.628067 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0005190 | SBH | 0.383523 | 0.0 | 0.096081 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005560 | RBH | 0.377260 | 3.499110 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G005390 | SBH | 0.0 | 0.847074 | 1.262261 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005410 | SBH | 0.095918 | 7.504684 | 0.480207 |
