Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g12080 | OGI:10022840 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:6715606-6716328 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGATGCGGAAGCACCTGTCAATGGTGGCCTTTAACAACATCACGCGGCTGACCTTCGGGAAGCGGTTCATAGATGCCGCTGGCGAGTTGGACGAGCAAGGGAGCGAGCTGAAGGCGATCGTGAACAACGGGATCAAGATCGGCGCGTCACTGACCATCGCAGAGCACATCCGGGTGCTGCGGTGGCTGAACCCGGTGGACGAGGAGCTCTATAACGCCCACAGCGCAAGGCGAGACCGCTTCACCAGGCGGATCATGGACGAGCATGCCCGTGAGCTCGAGCGTCACGGTGCCAAACAGCACTTCGTCGACGCCCTGTTCACCCTCAGGGACAAGTACGACCTCAGCGACGACACCGTCATCGGCCTCCTCTGCGATATGATTGCCGCCGGCACGGACACGACGGTGATAACGGTGGAGTGGGCGATGGCGGAGCTGGTGAGGAATCCAAGGGTGCAGATGAAGGCGCAAGAGGAGCTGGACCGCGTCATCGGCCGCGGTCGCGTCATGTTGGAGGCAGACATCCCGAACTTGCCCTACCTGCAGGCCGTCGTGAAGGAGTCGTTCCGGCTGCACCCACCGACGCCGCTGATGCTCCCGCACAAGGCCAGCACCAGCGTCAAGATCGCCGGCTACGATGTCCCAAAGGACGCCAGCGTCGTCGTCAACGTGTGGGCCGTAGCACGTGACCCCGGTGTCTGGGACAACCCGCTCGAGTAG
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| CDS seq | ATGGTGATGCGGAAGCACCTGTCAATGGTGGCCTTTAACAACATCACGCGGCTGACCTTCGGGAAGCGGTTCATAGATGCCGCTGGCGAGTTGGACGAGCAAGGGAGCGAGCTGAAGGCGATCGTGAACAACGGGATCAAGATCGGCGCGTCACTGACCATCGCAGAGCACATCCGGGTGCTGCGGTGGCTGAACCCGGTGGACGAGGAGCTCTATAACGCCCACAGCGCAAGGCGAGACCGCTTCACCAGGCGGATCATGGACGAGCATGCCCGTGAGCTCGAGCGTCACGGTGCCAAACAGCACTTCGTCGACGCCCTGTTCACCCTCAGGGACAAGTACGACCTCAGCGACGACACCGTCATCGGCCTCCTCTGCGATATGATTGCCGCCGGCACGGACACGACGGTGATAACGGTGGAGTGGGCGATGGCGGAGCTGGTGAGGAATCCAAGGGTGCAGATGAAGGCGCAAGAGGAGCTGGACCGCGTCATCGGCCGCGGTCGCGTCATGTTGGAGGCAGACATCCCGAACTTGCCCTACCTGCAGGCCGTCGTGAAGGAGTCGTTCCGGCTGCACCCACCGACGCCGCTGATGCTCCCGCACAAGGCCAGCACCAGCGTCAAGATCGCCGGCTACGATGTCCCAAAGGACGCCAGCGTCGTCGTCAACGTGTGGGCCGTAGCACGTGACCCCGGTGTCTGGGACAACCCGCTCGAGTAG
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| Protein seq | MVMRKHLSMVAFNNITRLTFGKRFIDAAGELDEQGSELKAIVNNGIKIGASLTIAEHIRVLRWLNPVDEELYNAHSARRDRFTRRIMDEHARELERHGAKQHFVDALFTLRDKYDLSDDTVIGLLCDMIAAGTDTTVITVEWAMAELVRNPRVQMKAQEELDRVIGRGRVMLEADIPNLPYLQAVVKESFRLHPPTPLMLPHKASTSVKIAGYDVPKDASVVVNVWAVARDPGVWDNPLE |
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| Function | Cytochrome P450 98A1 [UniProtKB/Swiss-Prot:O48956] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g12080 | LOC_Os10g12080.1 | Chr10 | 6715606 | 6716328 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGATGCGGAAGCACCTGTCAATGGTGGCCTTTAACAACATCACGCGGCTGACCTTCGGGAAGCGGTTCATAGATGCCGCTGGCGAGTTGGACGAGCAAGGGAGCGAGCTGAAGGCGATCGTGAACAACGGGATCAAGATCGGCGCGTCACTGACCATCGCAGAGCACATCCGGGTGCTGCGGTGGCTGAACCCGGTGGACGAGGAGCTCTATAACGCCCACAGCGCAAGGCGAGACCGCTTCACCAGGCGGATCATGGACGAGCATGCCCGTGAGCTCGAGCGTCACGGTGCCAAACAGCACTTCGTCGACGCCCTGTTCACCCTCAGGGACAAGTACGACCTCAGCGACGACACCGTCATCGGCCTCCTCTGCGATATGATTGCCGCCGGCACGGACACGACGGTGATAACGGTGGAGTGGGCGATGGCGGAGCTGGTGAGGAATCCAAGGGTGCAGATGAAGGCGCAAGAGGAGCTGGACCGCGTCATCGGCCGCGGTCGCGTCATGTTGGAGGCAGACATCCCGAACTTGCCCTACCTGCAGGCCGTCGTGAAGGAGTCGTTCCGGCTGCACCCACCGACGCCGCTGATGCTCCCGCACAAGGCCAGCACCAGCGTCAAGATCGCCGGCTACGATGTCCCAAAGGACGCCAGCGTCGTCGTCAACGTGTGGGCCGTAGCACGTGACCCCGGTGTCTGGGACAACCCGCTCGAGTAG
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| Protein seq | MVMRKHLSMVAFNNITRLTFGKRFIDAAGELDEQGSELKAIVNNGIKIGASLTIAEHIRVLRWLNPVDEELYNAHSARRDRFTRRIMDEHARELERHGAKQHFVDALFTLRDKYDLSDDTVIGLLCDMIAAGTDTTVITVEWAMAELVRNPRVQMKAQEELDRVIGRGRVMLEADIPNLPYLQAVVKESFRLHPPTPLMLPHKASTSVKIAGYDVPKDASVVVNVWAVARDPGVWDNPLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0196100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g18380 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0196100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005390 | RBH | 0.0 | 18.168695 | 5.162474 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005220 | RBH | 0.147186 | 5.608293 | 1.557054 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005190 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005530 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0005220 | RBH | 1.315796 | 2.341268 | 3.581812 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0116600 | RBH | 8.4818525 | 1.951497 | 0.198296 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005420 | RBH | 0.066913 | 0.543862 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0124000 | RBH | 1.3037105 | 0.025075 | 0.025286 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0005290 | RBH | 0.145962 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0005350 | RBH | 0.232654 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0005460 | RBH | 0.0 | 5.681882 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0005200 | RBH | 0.374303 | 0.0 | 0.602826 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005560 | RBH | 0.377260 | 3.499110 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G005410 | RBH | 0.155684 | 2.218259 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005430 | RBH | 0.477156 | 0.000000 | 0.418097 |
