Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0133600 | OGI:10007960 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:2099188-2099823 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAACAAAATGTTGATAATCTGCTGCTTTTCGGCATGACGACCAAACATAAAATTGTCAGTATAAAGGTAAGCATCGTAGGGCCTGCGACAGACACGTTCGCATCCCACTAACAATACAACAAACTCATTGATATTGGAAATGGCAGCTTCCAAATTGTTTAGCACAATTTCTAATTCATTGTCATCAGCAGGGCTTCTAGGGGTATCAAAAATTGTGCGCGAGCGTTTCAAAGAAACTGACATAGTACAAAACTTTCTCACCTCTTCATCCTTTGGTGATTTGTACTTGATTGTGTCCAGCATGTAGTACCCTCGATACATGCTTTCTGCAAGCATCTTGAGTTGCATTAACATCATAGGGTTTGTGATGCATCGCCCATCTGCTTCCTCGACGACTATGTGGACTCTAAGTAGGAGTTCCTTCAGCCTCTTCATCTTGTCATCTATAGAAGTACTTTCCATGTATTTCTTCATCAGAAATGATGTGAGTCGGTTGATTAGGTCACTTGCAATTGCAGATAAGGCTACCTCCATCTGAATCTATTCACGTGTGTAGCTCTGCAAAGGCTTGTGTGTTTGTGTGCTGCTCTCTAAAGGCTAGTGTGTCTGTGCACATCTCTCTATAAGACATGCTT
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| CDS seq | ATGGAGGTAGCCTTATCTGCAATTGCAAGTGACCTAATCAACCGACTCACATCATTTCTGATGAAGAAATACATGGAAAGTACTTCTATAGATGACAAGATGAAGAGGCTGAAGGAACTCCTACTTAGAGTCCACATAGTCGTCGAGGAAGCAGATGGGCGATGCATCACAAACCCTATGATGTTAATGCAACTCAAGATGCTTGCAGAAAGCATGTATCGAGGGTACTACATGCTGGACACAATCAAGTACAAATCACCAAAGGATGAAGAGGTGAGAAAGTTTTGTACTATGTCAGTTTCTTTGAAACGCTCGCGCACAATTTTTGATACCCCTAGAAGCCCTGCTGATGACAATGAATTAGAAATTGTGCTAAACAATTTGGAAGCTGCCATTTCCAATATCAATGAGTTTGTTGTATTGTTAGTGGGATGCGAACGTGTCTGTCGCAGGCCCTACGATGCTTACCTTTATACTGACAATTTTATGTTTGGTCGTCATGCCGAAAAGCAGCAGATTATCAACATTTTGTTGC
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| Protein seq | MEVALSAIASDLINRLTSFLMKKYMESTSIDDKMKRLKELLLRVHIVVEEADGRCITNPMMLMQLKMLAESMYRGYYMLDTIKYKSPKDEEVRKFCTMSVSLKRSRTIFDTPRSPADDNELEIVLNNLEAAISNINEFVVLLVGCERVCRRPYDAYLYTDNFMFGRHAEKQQIINILL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0133600 | OsNip_10t0133600-01 | Chr10 | 2099188 | 2099823 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGGTAGCCTTATCTGCAATTGCAAGTGACCTAATCAACCGACTCACATCATTTCTGATGAAGAAATACATGGAAAGTACTTCTATAGATGACAAGATGAAGAGGCTGAAGGAACTCCTACTTAGAGTCCACATAGTCGTCGAGGAAGCAGATGGGCGATGCATCACAAACCCTATGATGTTAATGCAACTCAAGATGCTTGCAGAAAGCATGTATCGAGGGTACTACATGCTGGACACAATCAAGTACAAATCACCAAAGGATGAAGAGGTGAGAAAGTTTTGTACTATGTCAGTTTCTTTGAAACGCTCGCGCACAATTTTTGATACCCCTAGAAGCCCTGCTGATGACAATGAATTAGAAATTGTGCTAAACAATTTGGAAGCTGCCATTTCCAATATCAATGAGTTTGTTGTATTGTTAGTGGGATGCGAACGTGTCTGTCGCAGGCCCTACGATGCTTACCTTTATACTGACAATTTTATGTTTGGTCGTCATGCCGAAAAGCAGCAGATTATCAACATTTTGTTGC
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| Protein seq | MEVALSAIASDLINRLTSFLMKKYMESTSIDDKMKRLKELLLRVHIVVEEADGRCITNPMMLMQLKMLAESMYRGYYMLDTIKYKSPKDEEVRKFCTMSVSLKRSRTIFDTPRSPADDNELEIVLNNLEAAISNINEFVVLLVGCERVCRRPYDAYLYTDNFMFGRHAEKQQIINILL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.746139 | 0.272442 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0133800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04470 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0133600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001720 | SBH | 0.347791 | 17.609373 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001680 | SBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001670 | SBH | 0.0 | 3.949432 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001630 | RBH | 0.0 | 0.036502 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001640 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0037900 | SBH | 0.004892 | 0 | 0.028802 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001780 | SBH | 0.0 | 0.804315 | 0.347561 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0041500 | RBH | 1.3979695 | 4.2184525 | 0.0933765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001660 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001690 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001650 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001740 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001720 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001600 | SBH | 0.0 | 0.0 | 0.0 |
