Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os10g04470 | OGI:10008100 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr10:2107756-2109186 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAACTACTAGATCGGCGCTTTCTCATAGTTTTGAATCCATTCTTGTCATCGACAAAAGATGTACCAGATGATACATACTTAGTATAAGGTGGTATTCGTGATTTCCATGTTACTATTTCAAAATCACCATTTGGAATTGCCACAGATCCAGCTATTAGATCTCCGAAGAATATAGTTGGCATTCCTATGTTTGGAAGATCGTCCCTTTCTACTCGAGGTGGCATGATATGAAGACGAGTAGGATAAGATGACACAAATCTAGTGGCATCTACTGGCTTCTCTTTCTCAATGATATCTTTTGGATGTTCACCATATTTTGATAAATTATTCTTGACCATCCCCTCGAAGCGTTGCAATATGTGGAGCCAGAAGTGAACATCATGATTCCTTCTAAGCAAGTCAGCAATCACATTTGCTGTTATCAGGGATCCACCAAGGACTACTGCAAGATCATTTGCAACCGATGCCATCTTAGGATCTTCCTTTTCATCAATGCTTCCAAATGCTAACTTCTTGAAAAGATAGTTGTACACCTCTTTTGATAAACTATTTAGACGAACTGCCTTTACTGATCCAAACCTCGCAAGATTTTCAATCCTACTTATGATTACCACGTTACTTCCTCCAGCTGTCATCTGACTTATAGTAGAATAGAAGTTTATCCAGTCATCTTCATCAATGTCCGTAAAATATTCACAAACAATCAAAGACGTCTCCTTTTTTAACTTTGCATACTCTATTCTCCCCATGCTGTCTCCACTGATGTACAAAATAAAAGAAAAGTAAGATCTAATACGCTCGTCGTTGCAGACATGGCTGATCAAAGCTTTCTTTCCTACCCTGCAACCACCGATGATCGGAAGAACGAGAGGAGCACTATGATGACAAGGATTTTGCAACAAAATGTTGATAATCTGCTGCTTCTCGACATGACGAGCAAACATAAAATTATCTGTGTAGAGGTAAGTATCATAGGGCCTGCGACACATGCGTTCACATCCCACTAACATTACAACAAACTCATTCATATTAGAAACAGCAGCTTCCAGATTATTCAGTGCAGTTTCTAATTCATTATCAATAGCTGGGTTTCTAGGTGTACCAAAAATTGTGCGTGAGCGCTTCAAAGAAACTGACACGGTTGATAATCTTCTTACCTCCTCATCATTTGGAGGTTTGTAATTGATTGTGTCCAGCATGTAGTACCCTCGATACATGATCTCTGCAAGCATCTTGAATTGAGTTAGCATCTTAGGGTTTGTGATGCATCGCCCATCTGCTTCCTCGACCACTGCATGGACCCTGAGTAGGAGTTCCTTCATCCTTTTTGTCTTGTCATCTTTCACGGTAGTTACTGTGTATTTCTTGATTAGAAAGGACATGAACCGGCTCATTAGGTCACTTGCAATTGCCGAAATGGCTGCCTCCAT
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| CDS seq | ATGGAGGCAGCCATTTCGGCAATTGCAAGTGACCTAATGAGCCGGTTCATGTCCTTTCTAATCAAGAAATACACAGTAACTACCGTGAAAGATGACAAGACAAAAAGGATGAAGGAACTCCTACTCAGGGTCCATGCAGTGGTCGAGGAAGCAGATGGGCGATGCATCACAAACCCTAAGATGCTAACTCAATTCAAGATGCTTGCAGAGATCATGTATCGAGGGTACTACATGCTGGACACAATCAATTACAAACCTCCAAATGATGAGGAGGTAAGAAGATTATCAACCGTGTCAGTTTCTTTGAAGCGCTCACGCACAATTTTTGGTACACCTAGAAACCCAGCTATTGATAATGAATTAGAAACTGCACTGAATAATCTGGAAGCTGCTGTTTCTAATATGAATGAGTTTGTTGTAATGCCCTATGATACTTACCTCTACACAGATAATTTTATGTTTGCTCGTCATGTCGAGAAGCAGCAGATTATCAACATTTTGTTGCAAAATCCTTGTCATCATAGTGCTCCTCTCGTTCTTCCGATCATCGGTGGTTGCAGGGTAGGAAAGAAAGCTTTGATCAGCCATGTCTGCAACGACGAGCGTATTAGATCTTACTTTTCTTTTATTTTGTACATCAGTGGAGACAGCATGGGGAGAATAGAGTATGCAAAGTTAAAAAAGGAGACGTCTTTGATTGTTTGTGAATATTTTACGGACATTGATGAAGATGACTGGATAAACTTCTATTCTACTATAAGTCAGATGACAGCTGGAGGAAGTAACGTGGTAATCATAAGTAGGATTGAAAATCTTGCGAGGTTTGGATCAGTAAAGGCAGTTCGTCTAAATAGTTTATCAAAAGAGGTGTACAACTATCTTTTCAAGAAGTTAGCATTTGGAAGCATTGATGAAAAGGAAGATCCTAAGATGGCATCGGTTGCAAATGATCTTGCAGTAGTCCTTGGTGGATCCCTGATAACAGCAAATGTGATTGCTGACTTGCTTAGAAGGAATCATGATGTTCACTTCTGGCTCCACATATTGCAACGCTTCGAGGGGATGGTCAAGAATAATTTATCAAAATATGGTGAACATCCAAAAGATATCATTGAGAAAGAGAAGCCAGTAGATGCCACTAGATTTGTGTCATCTTATCCTACTCGTCTTCATATCATGCCACCTCGAGTAGAAAGGGACGATCTTCCAAACATAGGAATGCCAACTATATTCTTCGGAGATCTAATAGCTGGATCTGTGGCAATTCCAAATGGTGATTTTGAAATAGTAACATGGAAATCACGAATACCACCTTATACTAAGTATGTATCATCTGGTACATCTTTTGTCGATGACAAGAATGGATTCAAAACTATGAGAAAGCGCCGATCTAGTAGTTAA
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| Protein seq | MEAAISAIASDLMSRFMSFLIKKYTVTTVKDDKTKRMKELLLRVHAVVEEADGRCITNPKMLTQFKMLAEIMYRGYYMLDTINYKPPNDEEVRRLSTVSVSLKRSRTIFGTPRNPAIDNELETALNNLEAAVSNMNEFVVMPYDTYLYTDNFMFARHVEKQQIINILLQNPCHHSAPLVLPIIGGCRVGKKALISHVCNDERIRSYFSFILYISGDSMGRIEYAKLKKETSLIVCEYFTDIDEDDWINFYSTISQMTAGGSNVVIISRIENLARFGSVKAVRLNSLSKEVYNYLFKKLAFGSIDEKEDPKMASVANDLAVVLGGSLITANVIADLLRRNHDVHFWLHILQRFEGMVKNNLSKYGEHPKDIIEKEKPVDATRFVSSYPTRLHIMPPRVERDDLPNIGMPTIFFGDLIAGSVAIPNGDFEIVTWKSRIPPYTKYVSSGTSFVDDKNGFKTMRKRRSSS |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os10g04470 | LOC_Os10g04470.1 | Chr10 | 2107756 | 2109186 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGGCAGCCATTTCGGCAATTGCAAGTGACCTAATGAGCCGGTTCATGTCCTTTCTAATCAAGAAATACACAGTAACTACCGTGAAAGATGACAAGACAAAAAGGATGAAGGAACTCCTACTCAGGGTCCATGCAGTGGTCGAGGAAGCAGATGGGCGATGCATCACAAACCCTAAGATGCTAACTCAATTCAAGATGCTTGCAGAGATCATGTATCGAGGGTACTACATGCTGGACACAATCAATTACAAACCTCCAAATGATGAGGAGGTAAGAAGATTATCAACCGTGTCAGTTTCTTTGAAGCGCTCACGCACAATTTTTGGTACACCTAGAAACCCAGCTATTGATAATGAATTAGAAACTGCACTGAATAATCTGGAAGCTGCTGTTTCTAATATGAATGAGTTTGTTGTAATGCCCTATGATACTTACCTCTACACAGATAATTTTATGTTTGCTCGTCATGTCGAGAAGCAGCAGATTATCAACATTTTGTTGCAAAATCCTTGTCATCATAGTGCTCCTCTCGTTCTTCCGATCATCGGTGGTTGCAGGGTAGGAAAGAAAGCTTTGATCAGCCATGTCTGCAACGACGAGCGTATTAGATCTTACTTTTCTTTTATTTTGTACATCAGTGGAGACAGCATGGGGAGAATAGAGTATGCAAAGTTAAAAAAGGAGACGTCTTTGATTGTTTGTGAATATTTTACGGACATTGATGAAGATGACTGGATAAACTTCTATTCTACTATAAGTCAGATGACAGCTGGAGGAAGTAACGTGGTAATCATAAGTAGGATTGAAAATCTTGCGAGGTTTGGATCAGTAAAGGCAGTTCGTCTAAATAGTTTATCAAAAGAGGTGTACAACTATCTTTTCAAGAAGTTAGCATTTGGAAGCATTGATGAAAAGGAAGATCCTAAGATGGCATCGGTTGCAAATGATCTTGCAGTAGTCCTTGGTGGATCCCTGATAACAGCAAATGTGATTGCTGACTTGCTTAGAAGGAATCATGATGTTCACTTCTGGCTCCACATATTGCAACGCTTCGAGGGGATGGTCAAGAATAATTTATCAAAATATGGTGAACATCCAAAAGATATCATTGAGAAAGAGAAGCCAGTAGATGCCACTAGATTTGTGTCATCTTATCCTACTCGTCTTCATATCATGCCACCTCGAGTAGAAAGGGACGATCTTCCAAACATAGGAATGCCAACTATATTCTTCGGAGATCTAATAGCTGGATCTGTGGCAATTCCAAATGGTGATTTTGAAATAGTAACATGGAAATCACGAATACCACCTTATACTAAGTATGTATCATCTGGTACATCTTTTGTCGATGACAAGAATGGATTCAAAACTATGAGAAAGCGCCGATCTAGTAGTTAA
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| Protein seq | MEAAISAIASDLMSRFMSFLIKKYTVTTVKDDKTKRMKELLLRVHAVVEEADGRCITNPKMLTQFKMLAEIMYRGYYMLDTINYKPPNDEEVRRLSTVSVSLKRSRTIFGTPRNPAIDNELETALNNLEAAVSNMNEFVVMPYDTYLYTDNFMFARHVEKQQIINILLQNPCHHSAPLVLPIIGGCRVGKKALISHVCNDERIRSYFSFILYISGDSMGRIEYAKLKKETSLIVCEYFTDIDEDDWINFYSTISQMTAGGSNVVIISRIENLARFGSVKAVRLNSLSKEVYNYLFKKLAFGSIDEKEDPKMASVANDLAVVLGGSLITANVIADLLRRNHDVHFWLHILQRFEGMVKNNLSKYGEHPKDIIEKEKPVDATRFVSSYPTRLHIMPPRVERDDLPNIGMPTIFFGDLIAGSVAIPNGDFEIVTWKSRIPPYTKYVSSGTSFVDDKNGFKTMRKRRSSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0133800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04160 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0133800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001720 | RBH | 0.347791 | 17.609373 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001680 | SBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001670 | SBH | 0.0 | 3.949432 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001630 | SBH | 0.0 | 0.036502 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001640 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0037900 | RBH | 0.004892 | 0 | 0.028802 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001780 | SBH | 0.0 | 0.804315 | 0.347561 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0041900 | RBH | 0.0327165 | 0.434603 | 0.017627 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001660 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001750 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001650 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001720 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001600 | RBH | 0.0 | 0.0 | 0.0 |
