Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0126600 | OGI:10005900 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:1688325-1691243 | ||||||||
| Gene Symbol | OsFbox512, Os_F0102 | ||||||||||
| DNA seq | GAGACTGAACAAAAAATAGTTGATGAATGGAAAGAAATTCTGTTGTACAAGGGATAAATAGGTCCTTGGTTGAACAACTGCTAATGTAATCAGAGATTAGGAGTGGAATGAAAACTAGCAAAGTTATTGGATGCCATTACTACAGACCAGCAAAAATGCAAAATAAGACCTCGGAACTCTACTGTAGCCAGTGAATGTAGCAGAAAGCGAGTTGATTCTTCAATGGGATGACAAACAAATGCAAAAGATCCTTTGGCATTTCATCTCTCCTCATACCGAACAAATGCAGGTAACTCATCCTCTTCCTCGTATTGGCCCCAGTGTTTGATATGAAACTGAACAGAGGCCATGCCATTACTAGCAAAGAAATCTTGCACACTGATGACCTGGGGATCATCCTCCAAGCATTTGACTTCAACAATCTTAAGGTGCTCGCATGTAAATGATCTTTCCATAAGCTCGCTAACGATCCTTGGAGATTTTTTCCAAATGCACCGTAGCACGAAAAACAGTAAGTTATTTCCCAATGCACAACCTCTTGAGCAAATAGAAACAATCGAGTAGGATCTGTATTACATTTGAGGAAAGCAATTACCTTCGCAAGATTCAGAGTTAACTTCTCTAGTCTCGCTGAGTTCTGAAGGAAGACAATTAGTGCATAGAAGTTTGCATCCAGGCACCACTGACCAAGAGTCAGGTTGACAACATTGATGAATTCTGGGCACCATTGCAAATTGTTTTCGAACGTCAGCTGCAAAAACACCACTTCCTCAATCACAAAACTTATCAACTAAATTGAGAGCTTCAAGATAATGGATGGCAAAAGATCACAGTAGAAAATGAACTGATGTCAACAAAAGACCAAAATAAACAATGTTCTACTTGTTTGTTTTCACCAAGAGTCTCTCGAGCACATGCAACTCACTGTCAGGATGGTTTCCATGGAAGTCCAAAACCAGTAAAAAAAACAACACAAATATATCATCAGGAAGCAGTAGGACATTCAACAATTCCCCAGAAGAATTTTCTGTTTGTATGTTGTCTTTTAATGACTCCTAACATTAAAATTATGCTAGCATAATGTCTGTGTGTTGTAACACCCAACACATTACACATCCCAACCAAGTATACTGTCTAAAATGTAAAATGCAATATACAATTAATCCTGAAATATAAAGATTACATGAAAGATTGGACAATCGAAAATGACAGCCTATACAAATCAATATTTTTCTTTCACTATCTTACAAATAGCATGCACATGTATTTGCAGCCATAAAAAATCTGGCCTTGGGGCAGGTGTAGGACATACAATCACCAATAACCCTCTCTTTCAAAAAGTACAACTAAAGTAAAATAGTCTGTCAGATATTGGACAAAATGCATTCAGTTGGCAACCCTGATATTGCATCTAGACTAGAACATGTAAAGTCCTACATGAGAAATGATCATGTTTCATTTTTAGATCAAACTTCGAACTAAGAAACTTCAGGGCTAGTTGAATAATGCACAAATGACCGGAGTACATGAACTAGATTGCATCAAGTGTTGATAACATCCATCATATTATCAATACATCATGGTTTCACAACATATGAATTAGCTATGCGATGTTAGTTTTACAGGTTCAGGCTACTAAACCATTGCAATTATGAAATGACGAGAAGAAAAGCTTAAGTTTCAATTTTTTCATATTGATACCTAAATCAAGGTGGATGGATACACTAAGTAATACAAATAACCATACCTCTGTACCCTCATAATTCAACTCCAAGTTTGTAACACCAGAAAGGCTCCAGAGACACTGGCGGAGATCATTAGCATCAAAACCATAACTGAATGTATAAAATTTAACTGATACTGATGTGGTCGTTAGTAATGCCATGTCCTTTAGCATAGGTGTGGAATTCTCAGGACTAGACAAGGTGAGAGAAGTAACACTTGGAATAGAAATATATGCCTTGTTCGCCTTGGAGAATTCAGTGTCGTCGATTGTCAAAACCTTCAGTGACTGGGAGAAGATCTCCTCATCCGCAATAGTGCAATCATGTAAGAAGAGTTCTTCCAATTCTGGACAGCCGGCGTCAAGTTGCTTGAAGAAACCTTGGTGTAAAGAAACACAGGAGAACCCAATTTTTCTCAGGTAGCATGAAGTGAACACCGAGTGATCGAGCTCCAATGGAAAGGAGAACACGACAACCTCCATAACCCTGGCCTGCTTTTGCAAAGCATGGCTAATCCACCTGTTGGCATCTACATTGGAATCCTTGTATTCATTGTACCCGTCTGATATTTTGTACTTGAGCCAGAATTTGTCCATCATGGTGGCAGGATCGCGGAGCTCCAACATCCGGTTAACGAACCTCTTGAACGCCACCTCGTCGTTGTAGTCCTCATCGTCCCCTTGGTAATCAATGAAATCAAACTCATTGAAGTCGGCGTTGATGCAGGGCACGGTGCGCCAGAGATCGCTCCACCGCCGGGACAGCACGCACGTCTGCACGGCCTGGCGCGCGTTCAGGAAGGACATGATGTGGTGGAGGATTTCGTCGGGGAGGCCGCTGATCCAGTCCATGCCGGCAGCGCGCGTCGGGGCCTTGACCCTCCTGCGCCTGCGCCTCCCAGGACGACCCTCCATGGCGGCCGATCACGCAGTGGCGTTTCGTCGAACAGGTGGTGCGCGTGGAAACTGCACAAGAGCAGAAGACCAAAAGAAGCCATATGAATCAACAGCGCAAGTAAGCAAGAATTGAGATCGCAGTGCAAGGAAGGAGTCGCGAGCAGAATCTGCCGGTGAAGAACTCGCCGCCGACCTCCAATGGCGCTCACGTCGCCGGCGTCGCGCCTCGACTTTCCAGAGCACCACGGAATGGGAGGCGGCGTCCTTCGCAGTCTGCCCCACGGAATGGGCTGGGCCAT
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| CDS seq | ATGGAGGGTCGTCCTGGGAGGCGCAGGCGCAGGAGGGTCAAGGCCCCGACGCGCGCTGCCGGCATGGACTGGATCAGCGGCCTCCCCGACGAAATCCTCCACCACATCATGTCCTTCCTGAACGCGCGCCAGGCCGTGCAGACGTGCGTGCTGTCCCGGCGGTGGAGCGATCTCTGGCGCACCGTGCCCTGCATCAACGCCGACTTCAATGAGTTTGATTTCATTGATTACCAAGGGGACGATGAGGACTACAACGACGAGGTGGCGTTCAAGAGGTTCGTTAACCGGATGTTGGAGCTCCGCGATCCTGCCACCATGATGGACAAATTCTGGCTCAAGTACAAAATATCAGACGGGTACAATGAATACAAGGATTCCAATGTAGATGCCAACAGGTGGATTAGCCATGCTTTGCAAAAGCAGGCCAGGGTTATGGAGGTTGTCGTGTTCTCCTTTCCATTGGAGCTCGATCACTCGGTGTTCACTTCATGCTACCTGAGAAAAATTGGGTTCTCCTGTGTTTCTTTACACCAAGGTTTCTTCAAGCAACTTGACGCCGGCTGTCCAGAATTGGAAGAACTCTTCTTACATGATTGCACTATTGCGGATGAGGAGATCTTCTCCCAGTCACTGAAGGTTTTGACAATCGACGACACTGAATTCTCCAAGGCGAACAAGGCATATATTTCTATTCCAAGTGTTACTTCTCTCACCTTGTCTAGTCCTGAGAATTCCACACCTATGCTAAAGGACATGGCATTACTAACGACCACATCAGTATCAGTTAAATTTTATACATTCAGTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTGAATTATGAGGGTACAGAGCTGACGTTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCAATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCAGCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGGATCGTTAG
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| Protein seq | MEGRPGRRRRRRVKAPTRAAGMDWISGLPDEILHHIMSFLNARQAVQTCVLSRRWSDLWRTVPCINADFNEFDFIDYQGDDEDYNDEVAFKRFVNRMLELRDPATMMDKFWLKYKISDGYNEYKDSNVDANRWISHALQKQARVMEVVVFSFPLELDHSVFTSCYLRKIGFSCVSLHQGFFKQLDAGCPELEELFLHDCTIADEEIFSQSLKVLTIDDTEFSKANKAYISIPSVTSLTLSSPENSTPMLKDMALLTTTSVSVKFYTFSYGFDANDLRQCLWSLSGVTNLELNYEGTELTFENNLQWCPEFINVVNLTLGQWCLDANFYALIVFLQNSARLEKLTLNLAKDR |
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| Function | Putative FBD-associated F-box protein At1g78730 [UniProtKB/Swiss-Prot:Q9ZV91] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0126600 | OsNip_10t0126600-01 | Chr10 | 1688331 | 1691224 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGGGTCGTCCTGGGAGGCGCAGGCGCAGGAGGGTCAAGGCCCCGACGCGCGCTGCCGGCATGGACTGGATCAGCGGCCTCCCCGACGAAATCCTCCACCACATCATGTCCTTCCTGAACGCGCGCCAGGCCGTGCAGACGTGCGTGCTGTCCCGGCGGTGGAGCGATCTCTGGCGCACCGTGCCCTGCATCAACGCCGACTTCAATGAGTTTGATTTCATTGATTACCAAGGGGACGATGAGGACTACAACGACGAGGTGGCGTTCAAGAGGTTCGTTAACCGGATGTTGGAGCTCCGCGATCCTGCCACCATGATGGACAAATTCTGGCTCAAGTACAAAATATCAGACGGGTACAATGAATACAAGGATTCCAATGTAGATGCCAACAGGTGGATTAGCCATGCTTTGCAAAAGCAGGCCAGGGTTATGGAGGTTGTCGTGTTCTCCTTTCCATTGGAGCTCGATCACTCGGTGTTCACTTCATGCTACCTGAGAAAAATTGGGTTCTCCTGTGTTTCTTTACACCAAGGTTTCTTCAAGCAACTTGACGCCGGCTGTCCAGAATTGGAAGAACTCTTCTTACATGATTGCACTATTGCGGATGAGGAGATCTTCTCCCAGTCACTGAAGGTTTTGACAATCGACGACACTGAATTCTCCAAGGCGAACAAGGCATATATTTCTATTCCAAGTGTTACTTCTCTCACCTTGTCTAGTCCTGAGAATTCCACACCTATGCTAAAGGACATGGCATTACTAACGACCACATCAGTATCAGTTAAATTTTATACATTCAGTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTGAATTATGAGGGTACAGAGCTGACGTTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCAATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCAGCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGGATCGTTAG
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| Protein seq | MEGRPGRRRRRRVKAPTRAAGMDWISGLPDEILHHIMSFLNARQAVQTCVLSRRWSDLWRTVPCINADFNEFDFIDYQGDDEDYNDEVAFKRFVNRMLELRDPATMMDKFWLKYKISDGYNEYKDSNVDANRWISHALQKQARVMEVVVFSFPLELDHSVFTSCYLRKIGFSCVSLHQGFFKQLDAGCPELEELFLHDCTIADEEIFSQSLKVLTIDDTEFSKANKAYISIPSVTSLTLSSPENSTPMLKDMALLTTTSVSVKFYTFSYGFDANDLRQCLWSLSGVTNLELNYEGTELTFENNLQWCPEFINVVNLTLGQWCLDANFYALIVFLQNSARLEKLTLNLAKDR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0126600 | OsNip_10t0126600-02 | Chr10 | 1688325 | 1691243 | - | IsoSeq | ||
| CDS seq | ATGGCCCAGCCCATTCCGTGGGGCAGACTGCGAAGGACGCCGCCTCCCATTCCGTGGTGCTCTGGAAAGTCGAGGCGCGACGCCGGCGACGTGAGCGCCATTGGAGGTCGGCGGCGAGTTCTTCACCGGCAGATTCTGCTCGCGACTCCTTCCTTGCACTGCGATCTCAATTCTTGCTTACTTGCGCTGTTGATTCATATGGCTTCTTTTGGTCTTCTGCTCTTGTGCAGTTTCCACGCGCACCACCTGTTCGACGAAACGCCACTGCGTGATCGGCCGCCATGGAGGGTCGTCCTGGGAGGCGCAGGCGCAGGAGGGTCAAGGCCCCGACGCGCGCTGCCGGCATGGACTGGATCAGCGGCCTCCCCGACGAAATCCTCCACCACATCATGTCCT
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| Protein seq | MAQPIPWGRLRRTPPPIPWCSGKSRRDAGDVSAIGGRRRVLHRQILLATPSLHCDLNSCLLALLIHMASFGLLLLCSFHAHHLFDETPLRDRPPWRVVLGGAGAGGSRPRRALPAWTGSAASPTKSSTTSCP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.620611 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0127900 | SBH | 0.131817 | 0.611922 | 0.323249 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g03740 | RBH | 0.0 | 0.0 | 0.172301 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0126600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001310 | RBH | 0.165412 | 1.142419 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001310 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001270 | SBH | 0.370892 | 1.143315 | 0.902974 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001220 | SBH | 0.017392 | 0.009777 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001240 | SBH | 0.178343 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0030900 | RBH | 0.095367 | 0.415881 | 0.1572715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001370 | SBH | 0.0 | 0.044737 | 0.383252 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0034900 | SBH | 0 | 0 | 0.0024205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001260 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001350 | SBH | 0.214049 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001340 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001220 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001300 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001290 | RBH | 0.0 | 0.517712 | 0.552608 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001170 | RBH | 0.276951 | 0.000000 | 0.000000 |
